KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:44:52 2014 Check: 00 .. Name: ENSBTAP00000011793/1-918 Len: 1104 Check: 7951 Weight: 1.00 Name: ENSP00000411012/1-948 Len: 1104 Check: 9505 Weight: 1.00 Name: ENSTTRP00000003532/1-897 Len: 1104 Check: 9638 Weight: 1.00 Name: bmy_11861T0/1-1042 Len: 1104 Check: 5430 Weight: 1.00 Name: BACU002311/1-661 Len: 1104 Check: 9310 Weight: 1.00 // 1 50 ENSBTAP00000011793/1-918 MAILSHQQQQ QQQQQFFPKC R--------- ---------- ---------- ENSP00000411012/1-948 MTGQARFHRG AEACRAIRQC RSRRPRAAHP EGRAGSGRGS RHASPGVRRG ENSTTRP00000003532/1-897 ---------- ---------- ---------- ---------- ---------- bmy_11861T0/1-1042 ---------- ---------- ---------- ---------- -------MNT BACU002311/1-661 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000011793/1-918 -FSLLLLNLE EYYFEQHRAH HIQHKGSQKE RKIRGSLKIC SKSVIFEPDA ENSP00000411012/1-948 GFSLLLLNLE EYYFEQHRAN HILHKGSHHE RKIRGSLKIC SKSVIFEPDS ENSTTRP00000003532/1-897 -FPLLLLNLE EYYFEQHTAN HIQHKGSQNE RKIRGSLKIC SKSVIFEPDA bmy_11861T0/1-1042 LFSLLLLNLE EYYFEQHTAN HIQRKGSQNE RKIRGSLKIC SKSVIFEPDA BACU002311/1-661 ---------- ---------- ---------- RKIRGSLKIC SKSVIFEPDA 101 150 ENSBTAP00000011793/1-918 ISQPIIKIPL RDCIKIGRHG ENEANRHFAK TVSGAISLIF SQVYFIKEHN ENSP00000411012/1-948 ISQPIIKIPL RDCIKIGKHG ENGANRHFTK AKSGGISLIF SQVYFIKEHN ENSTTRP00000003532/1-897 TSQPIIKIPL RDCIKIGKHG ENGANGHFAK AVSGGISLTF SQVYFIKEHN bmy_11861T0/1-1042 ISQPIIKIPL RDCIKIGKHG ENGANRHFAK AVSGGISLVF SQVYFIKEYN BACU002311/1-661 ISQPIIKIPL RDCIKIGKHG ENGASRHFAK AISGGISLIF SQVYFIKEHN 151 200 ENSBTAP00000011793/1-918 IVAPYKIERG MMEYVFELDV SGKVEDVVET LLQLHRASCL DKLGDQTAMI ENSP00000411012/1-948 VVAPYKIERG KMEYVFELDV PGKVEDVVET LLQLHRASCL DKLGDQTAMI ENSTTRP00000003532/1-897 IVAPYKIERG TMEYVFELDV SGKVEGVVET LLQLHRASCL DKLGDQTAMI bmy_11861T0/1-1042 IVAPYKIERG TMEYVFELDV SGKVEDVVET LLQLHRASCL DKLGDQTAMI BACU002311/1-661 IVAPYKIERG TMEYVFELDV SGKVEDVVET LLQ------- ---------I 201 250 ENSBTAP00000011793/1-918 TAILQSRLAR TSFDKNRFQS VSEKLHMECK AEMVTPLVTN PGHACVTDTT ENSP00000411012/1-948 TAILQSRLAR TSFDKNRFQN ISEKLHMECK AEMVTPLVTN PGHVCITDTN ENSTTRP00000003532/1-897 TAILQSRLAR TSFDKNRFQS VSEKLHMECK AEMVTPLVTN PGHVCITDTN bmy_11861T0/1-1042 TAILQSRLAR TSFDKNRFQS VSEKLHMECK AEMVTPLVTN PGHVCITDTT BACU002311/1-661 TAILQSRLAR TSFDKNRFQS VSEKLHMECK AEMVTPLVTN PGHVCITDTT 251 300 ENSBTAP00000011793/1-918 LYFQPLNGYP KPVVQIMLQD IRRIYKRRHG LMPLGLEVFC TEDDLCSDIY ENSP00000411012/1-948 LYFQPLNGYP KPVVQITLQD VRRIYKRRHG LMPLGLEVFC TEDDLCSDIY ENSTTRP00000003532/1-897 LYFQPLNGYP KPMVQITLHD VRRIYKRRHG LMPLGLEVFC TEDDLCSDVY bmy_11861T0/1-1042 LYFQPLNGYP KPMVQITLHD VRRIYKRRHG LMPLGLEVFC TEDDLCSDIY BACU002311/1-661 LYFQPLNGYP KPMVQITLHD VRRIYKRRHG LMPLGLEVFC TEDDLCSDVY 301 350 ENSBTAP00000011793/1-918 LKFYERQDRD DLYFYIATYL ---------- ---EHHVPER TAEGYTLQWQ ENSP00000411012/1-948 LKFYEPQDRD DLYFYIATYL ---------- ---EHHVAEH TAESYMLQWQ ENSTTRP00000003532/1-897 LKFYERQDRD DLYFYIATYL ---------- ---EHHVAER TAEGYTLQWQ bmy_11861T0/1-1042 LKFYERQDRD DLYFYIATYL ---------- ---EHHVAER TAEGYTLQWQ BACU002311/1-661 LKFYERQDRD DLYFYIATYL GLVLTLYCIC SCEEHHVAER TAEGYTLQWQ 351 400 ENSBTAP00000011793/1-918 RGLLSNYQYL LHLNSLADRS CSDLSQYPVF PWVIGDYSSS ELDLSNPETF ENSP00000411012/1-948 RGHLSNYQYL LHLNNLADRS CNDLSQYPVF PWIIHDYSSS ELDLSNPGTF ENSTTRP00000003532/1-897 RGLLSNYQYL LHLNTLADRS CNDLSQYPVF PWVVGDYSSS ELDLSNPGTF bmy_11861T0/1-1042 RGLLSNYQYL LHLNTLADRS CNDLSQYPVF PWVVGDYSSS ELDLSNPGTF BACU002311/1-661 RGLLSNYQYL LHLNTLADRS CNDLSQYPVF PWVVSDYSSS ELDLSNPGTF 401 450 ENSBTAP00000011793/1-918 RDLSKPVGAL NQERLERLLT RYQEMPEPRF MYGSHYSSPG YVLFYLVRIA ENSP00000411012/1-948 RDLSKPVGAL NKERLERLLT RYQEMPEPKF MYGSHYSSPG YVLFYLVRIA ENSTTRP00000003532/1-897 RDLSKPVGAL NKERLERLLT RYQEMPEPKF MYGSHYSSPG YVLFYLVRIA bmy_11861T0/1-1042 RDLSKPVGAL NKERLERLLT RYQEMAEPKF MYGSHYSSPG YVLFYLVRIA BACU002311/1-661 RDLSKPVGAL NKERLERLLT RYQEMPEPKF MYGSHYSSPG YVLFYLVRIA 451 500 ENSBTAP00000011793/1-918 PEYMLCLQNG RFDNADRMFN SIAETWKNCL DGATDFKELI PEFYGDDVSF ENSP00000411012/1-948 PEYMLCLQNG RFDNADRMFN SIAETWKNCL DGATDFKELI PEFYGDDVSF ENSTTRP00000003532/1-897 PEYMLCLQNG RFDNADRMFN SIAETWKNCL DGATDFKELI PEFYGDDVSF bmy_11861T0/1-1042 PEYMLCLQNG RFDNADRMFN SIAETWKNCL DGATDFKELI PEFYGDDVSF BACU002311/1-661 PEYMLCLQNG RFDNADRMFN SIAETWKNCL DGATDFKELI PEFYGDDVSF 501 550 ENSBTAP00000011793/1-918 LVNSLKLDLG KRQGGQLVND VELPPWARSP EDFLRKSRAA LESEYVSEHL ENSP00000411012/1-948 LVNSLKLDLG KRQGGQMVDD VELPPWASSP EDFLQKSKDA LESNYVSEHL ENSTTRP00000003532/1-897 LVNSLKLDLG KRQGGQMVDD VELPPWARSP EDFLQKSRDA LESDYVSEHL bmy_11861T0/1-1042 LVNSLKLDLG KRQGGQMVDD VELPPWARSP EDFLRKSRDA LESDYVSEHL BACU002311/1-661 LVNSLKLDLG KRQGGQMVDD VELPPWARSP EDFLQKSRDA LESDYVSEHL 551 600 ENSBTAP00000011793/1-918 HEWIDLVFGY KQQGQDAVGA HNVFHPLTYE GGVDLNSIED PDEKVAMLTQ ENSP00000411012/1-948 HEWIDLIFGY KQKGSDAVGA HNVFHPLTYE GGVDLNSIQD PDEKVAMLTQ ENSTTRP00000003532/1-897 HEWIDLVFGY KQKGRDAVGA HNVFHPLTYE GGVDLNSIED PDEKVAMLTQ bmy_11861T0/1-1042 HEWIDLVFGY KQKGRDAVGA HNVFHPVTYE GGVDLNSIED PDEKVAMLTQ BACU002311/1-661 HEWIDLVFGY KQKGRDAVGA HNVFHPLTYE GGVDLNSIED PDEKVAMLTQ 601 650 ENSBTAP00000011793/1-918 ILEFGQTPRQ LFVTPHPRRI TPKFKSVSQP SSYNASTADS P---GEESFE ENSP00000411012/1-948 ILEFGQTPKQ LFVTPHPRRI TPKFKSLSQT SSYNASMADS P---GEESFE ENSTTRP00000003532/1-897 ILEFGQTPKQ LFVTPHPRRI TPKFKSLAQP SSYNASTADT P---XXXXXX bmy_11861T0/1-1042 ILEFGQTPKQ LFVTPHPRRI TPKFKSLFQP SSYNASTADS PVSPGEESFE BACU002311/1-661 ILEFGQTPKQ LFVTPHPRRI TPKFKSLFQP SSYNASMADS PVSPGEESFE 651 700 ENSBTAP00000011793/1-918 DLTEESRTLA WSNIARLEPQ EQHRIHKEAV TGIAVSRNGS SIFTTSQDST ENSP00000411012/1-948 DLTEESKTLA WNNITKLQLH EHYKIHKEAV TGITVSRNGS SVFTTSQDST ENSTTRP00000003532/1-897 XXXXXXXXXX XSNITRLQLH EQHKIHKEAV TGIAVSRSGS SVFTTSQDST bmy_11861T0/1-1042 DLTEESRTLA WSNITRLQLH EQHKIHKEAV TGIAVSRSGS SVFTTSQDST BACU002311/1-661 DLTEESRTLA WSNITRLQLH EQHKIHKEAV TGIAVSHSGS SVFTTSQGLS 701 750 ENSBTAP00000011793/1-918 LKMFSKESRM LQRSISFSNM ALSSCLLLPG DATVISSSWD NNVYFYSIAF ENSP00000411012/1-948 LKMFSKESKM LQRSISFSNM ALSSCLLLPG DATVITSSWD NNVYFYSIAF ENSTTRP00000003532/1-897 LKMFSKESKM LQRSISFSNM ALSSCLLLPG DATVVSSSWD NNVYFYSIAF bmy_11861T0/1-1042 LKMFSKESKM LQRSISFSNM ALSSCLLLPG DATVVSSSWD NNVYFYSIAF BACU002311/1-661 VK-------- ---------- PLLAAIALP- ---------- ----FLAV-- 751 800 ENSBTAP00000011793/1-918 GRRQDTLMGH DDAVSKICWH DNRLYSASWD STVKVWSGVP AEMPCARKQH ENSP00000411012/1-948 GRRQDTLMGH DDAVSKICWH DNRLYSASWD STVKVWSGVP AEMPGTKRHH ENSTTRP00000003532/1-897 GRRQDTLMGH DDAVSKICWH DNRLYSASWD STVKVWSGVP AEMPGSRRHQ bmy_11861T0/1-1042 GRRQDTLMGH DDAVSKICWH DNRLYSASWD ST--VWSGVP AEMPGSRRHQ BACU002311/1-661 ---------- ---------- ----YT---- ----VWSGVP AEMPGSWRHQ 801 850 ENSBTAP00000011793/1-918 FELLAELEHD VSVDTISLNA AGTLLASGTK EGTLTIWDLT TATLLHQIPC ENSP00000411012/1-948 FDLLAELEHD VSVDTISLNA ASTLLVSGTK EGTVNIWDLT TATLMHQIPC ENSTTRP00000003532/1-897 FDLLAELEHD VSVDTISLSA ASTLLASGTR EGTVTIWDLT AATVLHQIPC bmy_11861T0/1-1042 FDLLAELEHD VSVDTISLSA ASTLLVSGTK EGTVTIWDLT AATILHQIPC BACU002311/1-661 FDLLAELEHD VSVST----- ---------- ---------- ---------- 851 900 ENSBTAP00000011793/1-918 HEGTVGDTAF SPDSRHVLST GADSRLNVID VQTGMLISSV TADEPQRCFL ENSP00000411012/1-948 HSGIVCDTAF SPDSRHVLST GTDGCLNVID VQTGMLISSM TSDEPQRCFV ENSTTRP00000003532/1-897 HSGTVCDTAF SPXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXCFL bmy_11861T0/1-1042 HSGTVCDTAF SPDSRHVLSA GEDGCLNVVD VQTGMLISSM TSDKPQRCFL BACU002311/1-661 ---------- ---------- ---------- -------GNR AAREPS---- 901 950 ENSBTAP00000011793/1-918 WDGNSVVSGS QSGELLVWDL LGGRVSKRIQ GHA------- ---------- ENSP00000411012/1-948 WDGNSVLSGS QSGELLVWDL LGAKISERIQ GHT------- ---------- ENSTTRP00000003532/1-897 WDGNSVLSGS QSGELLVWDL LGGKIRERIQ GHT------- ---------- bmy_11861T0/1-1042 WDGNSVLSGS QSGELLVWDL LGGKIRERIQ GHTGKLSAAD LTPPNLLFPP BACU002311/1-661 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSBTAP00000011793/1-918 ---------- ---------- ---------- ---------- ---------- ENSP00000411012/1-948 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003532/1-897 ---------- ---------- ---------- ---------- ---------- bmy_11861T0/1-1042 VDVPFSSRKL PWKRRLPPPD PPPGLLLGGL CSWVSGDVSS LKGALLRASS BACU002311/1-661 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSBTAP00000011793/1-918 ---------- ---------- ---------- ---------- ---------- ENSP00000411012/1-948 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003532/1-897 ---------- ---------- ---------- ---------- ---------- bmy_11861T0/1-1042 SQALNNTLTP DRNGSKPANS HQFPASLICC LTFVTGFPVL SSYSEFLQRL BACU002311/1-661 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSBTAP00000011793/1-918 ---------- ---------- ---GAVTCMW MNEQCSSVIT GGEDRQIMFW ENSP00000411012/1-948 ---------- ---------- ---GAVTCIW MNEQCSSIIT GGEDRQIIFW ENSTTRP00000003532/1-897 ---------- ---------- ---GAVTCMW MNDQCSSVIT GGEDRQIMFW bmy_11861T0/1-1042 YYRTRPCGYL LVRSPPKHTS LPAGAVTCMW MNEQCSRVIT GGADRQIMFW BACU002311/1-661 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSBTAP00000011793/1-918 KLQY ENSP00000411012/1-948 KLQY ENSTTRP00000003532/1-897 KLQY bmy_11861T0/1-1042 KLQC BACU002311/1-661 ----