KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:44:53 2014 Check: 00 .. Name: ENSTTRP00000010336/1-944 Len: 1096 Check: 125 Weight: 1.00 Name: ENSP00000389813/1-1090 Len: 1096 Check: 1885 Weight: 1.00 Name: bmy_07027T0/1-790 Len: 1096 Check: 6830 Weight: 1.00 Name: BACU013604/1-960 Len: 1096 Check: 8944 Weight: 1.00 Name: ENSBTAP00000011801/1-1055 Len: 1096 Check: 3296 Weight: 1.00 // 1 50 ENSTTRP00000010336/1-944 ---------- ---------- ---------- ---------- ---------- ENSP00000389813/1-1090 MCVRSCFQSP RLQWVWRTAF LKHTQRRHQG SHRWTHLGGS TYRAVIFDMG bmy_07027T0/1-790 MCLRRLLQSA QLQRAWRAVF VKHVQGRHQG AWRWTHSGGG TYRAVIFDMG BACU013604/1-960 MCLRRLLQSA QLQRAWRAVF VKHVHGRHQG AWRWTHSGGG TYRAVIFDMG ENSBTAP00000011801/1-1055 MCLRQLLQSS QLQRAWRAAF LKHVQGRHPG AWRWTHSGGG PYRAVIFDMG 51 100 ENSTTRP00000010336/1-944 ---------- ---------- ---------- ---------- ---------- ENSP00000389813/1-1090 GVLIPSPGRV AAEWEVQNRI PSGTILKALM EGGENGPWMR FMRAEITAEG bmy_07027T0/1-790 GVLIPSPGRV AAEWEVQNHI PSGTILKALI SGGENGPWMK FMRAEITTED BACU013604/1-960 GVLIPSPGRV AAEWEVQNHI PSGTILKALI SGGKNGPWMK FMRAEITTED ENSBTAP00000011801/1-1055 GVLLPSPGRV AAEWEVQNHI PSGTIVKALI SGGENGPWMK FMRAEITTED 101 150 ENSTTRP00000010336/1-944 ---------- --SKTSVPLD SFFSLLTSER VAKPFPVMTE AITQIRAKGL ENSP00000389813/1-1090 FLREFGRLCS EMLKTSVPVD SFFSLLTSER VAKQFPVMTE AITQIRAKGL bmy_07027T0/1-790 FLQEFGRLCS EISKTSVPVD SFFSLLTSEQ VAKQFPVMTE AITQIRAKGL BACU013604/1-960 FLQKFGRLCS EISKTSVPVD SFFSLLTSER VAKQFPVMTE AITQIRAKGL ENSBTAP00000011801/1-1055 FLQEFGRLCS EISKTSVPVD SFFSLLTSER VAKQFPVMTE AITQIRAKGL 151 200 ENSTTRP00000010336/1-944 QTAVLSNNFY LPNGKSFLPL DRKQFDVVVE SCLEGVCKPD ARMYKLCLER ENSP00000389813/1-1090 QTAVLSNNFY LPNQKSFLPL DRKQFDVIVE SCMEGICKPD PRIYKLCLEQ bmy_07027T0/1-790 QTAVLSNNFY LPNGKSFLPL DRKQFDVVVE SCLEGVCKPD ARMYKLCLER BACU013604/1-960 QTAVLSNNFY LPNGKSFLPL DRKQFDVVVE SCLEGVCKPD ARMYKLCLER ENSBTAP00000011801/1-1055 QTAVLSNNFY LPNGKSFLPL DRKQFDVVVE SCLEGVCKPD PRMYKLCLER 201 250 ENSTTRP00000010336/1-944 LGRQPSESIF LDDLGPNLKA AASLGIHIIK ---------- ---------- ENSP00000389813/1-1090 LGLQPSESIF LDDLGTNLKE AARLGIHTIK RQGFAVLPKL VSNSWAQAIY bmy_07027T0/1-790 LGRQPSESIF LDDLGPNLKA AASLGIHTIK ---------- ---------- BACU013604/1-960 LGRQPSESIF LDDLGPNLKA AASLGIHTIK ---------- ---------- ENSBTAP00000011801/1-1055 LGRQPSESIF LDDLGPNLKA AAGLGIHTIK ---------- ---------- 251 300 ENSTTRP00000010336/1-944 ---------- -XXXXXXXXX XXXXXXXXXX XXXXXXXXXX XKTMEIPKDS ENSP00000389813/1-1090 PPYPPKVVRL QVNDPETAVK ELEALLGFTL RVGVPNTRPV KKTMEIPKDS bmy_07027T0/1-790 ---------- -VHDPETAVK ELETLLGFPL RMAVPNTRPV RKTMEIPKDS BACU013604/1-960 ---------- -VHDPETAVK ELETLLGFPL RMAVPNTRPV RKTMEIPKDS ENSBTAP00000011801/1-1055 ---------- -VDDPETAVK ELETLLGFPL RMAVPNTRPV RKTMEIPKDA 301 350 ENSTTRP00000010336/1-944 LEHL--DLLG TQATGPLELL QFDHGQSNPT YYIRLAKHQL VLRKKPPGTL ENSP00000389813/1-1090 LQKYLKDLLG IQTTGPLELL QFDHGQSNPT YYIRLANRDL VLRKKPPGTL bmy_07027T0/1-790 LEKYLKDLLG TQATGPLELL QFDHGQSNPT YYIRLAKHQL VLRKKPPGTL BACU013604/1-960 LEKYLQDLLG TQATGPLELL QFDHGQSNPT YYIRLAKHQL VLRKKPPGTL ENSBTAP00000011801/1-1055 LEKYLKDLLG IQPTGPLELL QFDHGQSNPT YYVKLANHQL VLRKKPPGTL 351 400 ENSTTRP00000010336/1-944 LPSTHAIERE FXXXXXXXXX XXXXXXXXXX XXXXXVIGTP FYLMEYCPGL ENSP00000389813/1-1090 LPSAHAIERE FRIMKALANA GVPVPNVLDL CEDSSVIGTP FYVMEYCPGL bmy_07027T0/1-790 LPSAHAVERE FRIMKALANA GVPVPKVLDL CEDSRVIGTP FYLMEYCPGL BACU013604/1-960 LPSAHAVERE FRIMKALANA GVPVPKVLDL CEDSRVIGTP FYLMEYCPGL ENSBTAP00000011801/1-1055 LPSAHAVERE FRIMKALGNA GVPVPKVLDL CEDSSVVGTP FYLMEYCPGR 401 450 ENSTTRP00000010336/1-944 IYKDPSLPGL EPSQRRAIYT AMNRVLCKIH SVDLKAAGLE DYGKHGDYVA ENSP00000389813/1-1090 IYKDPSLPGL EPSHRRAIYT AMNTVLCKIH SVDLQAVGLE DYGKQGDYIP bmy_07027T0/1-790 IYKDPSLPGL EPSQRRAIYT AMNRVLCKIH SVDLKAAGLE DYGKHGDYIA BACU013604/1-960 IYKDPSLPGL EPSQRRAIYT AMNRVLCKIH SVDLKAAGLE DYGKHA---- ENSBTAP00000011801/1-1055 IYKDPSLPGL EPSQRRAIYT AMNRVLCKIH SVDLKAAGLE DYGKHGDYLA 451 500 ENSTTRP00000010336/1-944 RQVQTWIKQY RASETSTIPP MERLIEWLPL HLPR------ QQQTTVVHGD ENSP00000389813/1-1090 RQVRTWVKQY RASETSTIPA MERLIEWLPL HLPR------ QQRTTVVHGD bmy_07027T0/1-790 RQVQTWIKQY RASETSTIPP MERLIEWLPL HFPR------ QQQTTVVHGD BACU013604/1-960 --LLDLPKDR RLGALS---- ----VQWIPQ KEPNLSILVF KLLGNIFLSD ENSBTAP00000011801/1-1055 RQVQTWIKQY RASETSTIPA MERLIEWLPL HLPR------ QQRTTVVHGD 501 550 ENSTTRP00000010336/1-944 FRLDNVLFHP ETAEVLAVLD WELSTLGDPL ADVAHSCLAH YLPSSFPVQP ENSP00000389813/1-1090 FRLDNLVFHP EEPEVLAVLD WELSTLGDPL ADVAYSCLAH YLPSSFPVLR bmy_07027T0/1-790 FRLDNLLFHP ETTEVLAVLD WELSTLGDPL ADVASSCLAH YLPSSFPIQP BACU013604/1-960 EGLDNLLFHP ERAEVLAVLD WELSTLGDPL ADVASSCLAH YLPSSFPIQP ENSBTAP00000011801/1-1055 FRLDNLLFHP ETAEVLAVLD WELSTLGDPL ADVAYNCLAH YLPSGFPIQP 551 600 ENSTTRP00000010336/1-944 GLSDSDLSEL GIPTAEEYFR MYCLHMGIRP TENWNFYMAF SFFRIAAILQ ENSP00000389813/1-1090 GINDCDLTQL GIPAAEEYFR MYCLQMGLPP TENWNFYMAF SFFRVAAILQ bmy_07027T0/1-790 GLSDTDLTEL GIPTAEEYFR MYCLHMGIRP TENWNFYMAF SFFRIAAILQ BACU013604/1-960 GLRDSDLTEL GIPTAEEYFR MYCLHMGIRP TENWNFYMAF SSFRIAAILQ ENSBTAP00000011801/1-1055 GLSDCDLTEL GIPTAEDYFR MYCLHMGIPP IENWNFYMAF SFFRIAAILQ 601 650 ENSTTRP00000010336/1-944 GVYKRSLTXH ASSATGEQTG KLTEFTSNLA WD-AVKEGFR VFKEMPATKP ENSP00000389813/1-1090 GVYKRSLTGQ ASSTYAEQTG KLTEFVSNLA WDFAVKEGFR VFKEMPFTNP bmy_07027T0/1-790 GVYKRSLTGH ASSATAEQTG KLTEFMSNLA WDFAVKEGFR VFKEMPATKP BACU013604/1-960 GVYKRSLT-- ---------- ---------- ---------- ---------- ENSBTAP00000011801/1-1055 GVYKRSLTGQ ASSATAKQTG KLTEFMSNLA WDFAIKEGFQ IFKEMPATKP 651 700 ENSTTRP00000010336/1-944 LTRSQHTRAR PQSLPRTPGM RSYVTSTASS PAHISKGALV FSPEGLSPPV ENSP00000389813/1-1090 LTRSYHTWAR PQSQWCPTGS RSYSSVPEAS PAHTSRGGLV ISPESLSPPV bmy_07027T0/1-790 LTRSHHTRAR PQSLPRTPGM RSYVTSTDSS PARVSKGALV FSPEGLSPPV BACU013604/1-960 ---------- ---------- ---------- ---------- ---------V ENSBTAP00000011801/1-1055 LMRSHHTW-- --SLLRTPGT RSYVTSTDSS PAHASKGALI FSPEGLPHRV 701 750 ENSTTRP00000010336/1-944 RELYQWLKQV MEPHVYPAEP ELQPHQTSAE KWTPSPLLED LKEKAKAEGL ENSP00000389813/1-1090 RELYHRLKHF MEQRVYPAEP ELQSHQASAA RWSPSPLIED LKEKAKAEGL bmy_07027T0/1-790 RVLYQRLKQF MERHVYPAEP ELQHHQASAE KWTPSPLVED LKEKAKAEGL BACU013604/1-960 RELYQRLKQF MERHVYPAEP ELQHHQASAE KWTPSPLVED LKEKAKAEGL ENSBTAP00000011801/1-1055 RELYQKLKEF MERHVYPAEP ELQRHQVSAE RWTPSPLVED LKEKAKAEGL 751 800 ENSTTRP00000010336/1-944 WNVFLPVETD PEKKYGAGLT NVEYAHLCEV MGTSLYAPEI FNCSAPDTGN ENSP00000389813/1-1090 WNLFLPLEAD PEKKYGAGLT NVEYAHLCEL MGTSLYAPEV CNCSAPDTGN bmy_07027T0/1-790 WNLFLPVETD PEKKYGAGLT NVEYAHLCEV MGTSLYAPEV ---------- BACU013604/1-960 WNLFLPVETD PEKKYGAGLT NVEYAHLCEV MGTSLYAPEI FNCSAPDTGN ENSBTAP00000011801/1-1055 WNLFLPLETD PEKKYGAGLT NMEYAHLCEV MGTSLYAPEI FNCSAPDTGN 801 850 ENSTTRP00000010336/1-944 VELLVRYGTE EQKARWLIPL LEGKARYCFA MTEPQVASSD ATNIESSIQE ENSP00000389813/1-1090 MELLVRYGTE AQKARWLIPL LEGKARSCFA MTEPQVASSD ATNIEASIRE bmy_07027T0/1-790 ---------- ---------- ---------- ---PSLMSFS A--------- BACU013604/1-960 MELLVRYGTE EQKARWLIPL LEGKARSCFA MTEPQVASSD ATNIESSIRE ENSBTAP00000011801/1-1055 MELLVRYGTE EQKARWLIPL LEGKARSCFA MTEPQVASSD ATNIESSIRE 851 900 ENSTTRP00000010336/1-944 EDGFYVINGH KWWISGILDP RCQLCVFMGK TDPHAPRHQQ QSMLSVPMDT ENSP00000389813/1-1090 EDSFYVINGH KWWITGILDP RCQLCVFMGK TDPHAPRHRQ QSVLLVPMDT bmy_07027T0/1-790 ---------- --W------- ---------- ---------- EEILVLHTSS BACU013604/1-960 EDGFYVINGH KWWVSGILDP RCQLCVFMGK TDPHAPRHQQ QSMLLVPMDT ENSBTAP00000011801/1-1055 EDGFYVINGH KWWITGILDP RCQLCVFMGK TDPHAPRHQQ QSILLVPMDT 901 950 ENSTTRP00000010336/1-944 PGIKIIRPLT VYGLEDAPGG HGEVLFEQVC VPKENMVLGP GRGFEIAQGR ENSP00000389813/1-1090 PGIKIIRPLT VYGLEDAPGG HGEVRFEHVR VPKENMVLGP GRGFEIAQGR bmy_07027T0/1-790 ATL------- ---------- ---------- ---------- -------LGR BACU013604/1-960 PGIKIIRPLT VYGLEDAPGG HGEVLFEQVC VPKENMVLGP GRGFEIAQGR ENSBTAP00000011801/1-1055 PGIKIIRPLT VYGLEDAPGG HGEVLFEQVC VPKENIILGP GRGFEIAQGR 951 1000 ENSTTRP00000010336/1-944 LGPGRIHHCM WLIGYSERAL ALTKARXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000389813/1-1090 LGPGRIHHCM RLIGFSERAL ALMKARVKSR LAFGKPLVEQ GTVLADIAQS bmy_07027T0/1-790 WGSLQLHWTQ EH-------- ---------- ---------- ---------- BACU013604/1-960 LGPGRIHHCM RLIGYSERAL ALMKARAKSR MAFGKPLVEQ GTVLADIAQS ENSBTAP00000011801/1-1055 LGPGRIHHCM RLIGCSERAL ALMKARVKSR VAFGKPLVEQ GTVLADIALS 1001 1050 ENSTTRP00000010336/1-944 XXXXXXXXXX XXXXXXXXXX XXXXAAALDI AMIKMGAPPM AYRVTDRAIQ ENSP00000389813/1-1090 RVEIEQARLL VLRAAHLMDL AGNKAAALDI AMIKMVAPSM ASRVIDRAIQ bmy_07027T0/1-790 ---------- ---------- ---------- ---------- ---------- BACU013604/1-960 RVEIEQARLL VLKAAHVMDV AGNKAAALDI AMIKMVAPSM AYRVTDRAIQ ENSBTAP00000011801/1-1055 RVEIEQARLL VLKAAHVMDV VGNKAAALDI AMIKMVAPSM ASRVIDRAIQ 1051 1100 ENSTTRP00000010336/1-944 AFGAAGPSSD YPLAQFFTRA RALRFADGPD EVHRAAVAKM ELKRCS ENSP00000389813/1-1090 AFGAAGLSSD YPLAQFFTWA RALRFADGPD EVHRATVAKL ELKHRI bmy_07027T0/1-790 ---------- ---------- ---------- ---------- ------ BACU013604/1-960 AFGAAGLSSD YPLAQFFTRA RALRFADGPD EVHRAAVAKT ELKRCS ENSBTAP00000011801/1-1055 AFGAAGLSSN YPLAQFFAGA RALRFADGPD EVHRAAVAKM ELKHHS