KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:44:54 2014 Check: 00 .. Name: bmy_02934T0/1-319 Len: 759 Check: 836 Weight: 1.00 Name: ENSTTRP00000001898/1-579 Len: 759 Check: 9977 Weight: 1.00 Name: BACU011337/1-583 Len: 759 Check: 6892 Weight: 1.00 Name: ENSP00000416418/1-597 Len: 759 Check: 3725 Weight: 1.00 Name: ENSBTAP00000011809/1-585 Len: 759 Check: 8599 Weight: 1.00 // 1 50 bmy_02934T0/1-319 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001898/1-579 ----IGEKMA EED---SFPN TTHEGFNVTL HTTLAVTTKL VRPSPAKPIL BACU011337/1-583 MVLACGRLLG K-----RFPN TTHEGFNVTL HTTLVVTTKL VRPTPAKPIL ENSP00000416418/1-597 ----MGEKMA EEE---RFPN TTHEGFNVTL HTTLVVTTKL VLPTPGKPIL ENSBTAP00000011809/1-585 ----IGEKMA EEEFSNRFPN TTHEGFNVTL HTTLVVTTKL VLPTPAKPIL 51 100 bmy_02934T0/1-319 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001898/1-579 PVQTGQQAQQ EEQSSGMTIF FSLLVLAICI ILVHLLIRYR LHFLPESVAV BACU011337/1-583 PVQTGEQAQQ EEQSSGMTIF FSLLVLAICI ILVHLLIRYR LHFLPESVAV ENSP00000416418/1-597 PVQTGEQAQQ EEQSSGMTIF FSLLVLAICI ILVHLLIRYR LHFLPESVAV ENSBTAP00000011809/1-585 PVQTGEQAQQ EEQSSGMTIF FSLLVLAICI ILVHLLIRYR LHFLPESVAV 101 150 bmy_02934T0/1-319 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001898/1-579 VSLGILMGAV IKIIEFKKLA NWKEEEMFRP NMFFLLLLPP IIFESGYSLH BACU011337/1-583 VSLGILMGAV IKIIEFKKLA NWKEEEMFRP NMFFLLLLPP IIFESGYSLH ENSP00000416418/1-597 VSLGILMGAV IKIIEFKKLA NWKEEEMFRP NMFFLLLLPP IIFESGYSLH ENSBTAP00000011809/1-585 VSLGILMGAV IKIIEFKKLA NWKEEEMFRP NMFFLLLLPP IIFESGYSLH 151 200 bmy_02934T0/1-319 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001898/1-579 KGNFFQNIGS ITLFAVFGTA ISAFVVGGGI YFLG------ ---------- BACU011337/1-583 KGNFFQNIGS ITLFAVFGTA ISAFVVGGGI YFLG------ ---------- ENSP00000416418/1-597 KGNFFQNIGS ITLFAVFGTA ISAFVVGGGI YFLGQGFFFV CVCVFVCFIL ENSBTAP00000011809/1-585 KGNFFQNIGS ITLFAVFGTA ISAFVVGGGI YFLG------ ---------- 201 250 bmy_02934T0/1-319 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001898/1-579 QADVISKLNM TDSFAFGSLI SAVDPVATIA IFNALHVDPV LNMLVFGESI BACU011337/1-583 QADVISKLNM TDSFAFGSLI SAVDPVATIA IFNALHVDPV LNMLVFGESI ENSP00000416418/1-597 QADVISKLNM TDSFAFGSLI SAVDPVATIA IFNALHVDPV LNMLVFGESI ENSBTAP00000011809/1-585 QADVISKLNM TDSFAFGSLI SAVDPVATIA IFNALHVDPV LNMLVFGESI 251 300 bmy_02934T0/1-319 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001898/1-579 LNDAVSIVLT NTAEGLTRKN MSDVSGWQTF LQALGYFLKM FFGSAALGTL BACU011337/1-583 LNDAVSIVLT NTAEGLTRKN MSDVSGWQTF LQALGYFLKM FFGSAALGTL ENSP00000416418/1-597 LNDAVSIVLT NTAEGLTRKN MSDVSGWQTF LQALDYFLKM FFGSAALGTL ENSBTAP00000011809/1-585 LNDAVSIVLT NTAEGLTRKN MSDVSGWQTF LQALGYFLKM FFGSAALGTL 301 350 bmy_02934T0/1-319 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001898/1-579 TGLISALXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXIMAILFS BACU011337/1-583 TGLISALVLK HIDLRKTPSL EFGMMIIFAY LPYGLAEGIS LSGIMAILFS ENSP00000416418/1-597 TGLISALVLK HIDLRKTPSL EFGMMIIFAY LPYGLAEGIS LSGIMAILFS ENSBTAP00000011809/1-585 TGLISALVLK HIDLRKTPSL EFGMMIIFAY LPYGLAEGIS LSGIMAILFS 351 400 bmy_02934T0/1-319 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001898/1-579 GIVMSHYTHH NLSPVTQILM QQTLRTVAFL CETCVFAFLG LSIFSFPHKF BACU011337/1-583 GIVMSHYTHH NLSPVTQILM QQTLRTVAFL CETCVFAFLG LSIFSFPHKF ENSP00000416418/1-597 GIVMSHYTHH NLSPVTQILM QQTLRTVAFL CETCVFAFLG LSIFSFPHKF ENSBTAP00000011809/1-585 GIVMSHYTHH NLSPVTQILM QQTLRTVAFL CETCVFAFLG LSIFSFPHKF 401 450 bmy_02934T0/1-319 ---------- ---------- ---------- --------MM FIMWFSGLRG ENSTTRP00000001898/1-579 EISFVIWCIV LVLFGRAVNI FPLSYLLNFF RDHKITPKMM FIMWFSGLRG BACU011337/1-583 EISFVIWCIV LVLFGRAVNI FPLSYLLNFF RDHKITPKMM FIMWFSGLRG ENSP00000416418/1-597 EISFVIWCIV LVLFGRAVNI FPLSYLLNFF RDHKITPKMM FIMWFSGLRG ENSBTAP00000011809/1-585 EISFVIWCIV LVLFGRAVNI FPLSYLLNFF RDHKITPKMM FIMWFSGLRG 451 500 bmy_02934T0/1-319 AIPYALSLHL DLEPMEKRQL IGTTTISIVL FTILLLGGST MPLIRFADIE ENSTTRP00000001898/1-579 AIPYALSLHL DLEPMEKRQL IGTTTISIVL FTILLLGGST MPLIRFADIE BACU011337/1-583 AIPYALSLHL DLEPMEKRQL VGTTTISIVL FTILLLGGST MPLIRFADVE ENSP00000416418/1-597 AIPYALSLHL DLEPMEKRQL IGTTTIVIVL FTILLLGGST MPLIRLMDIE ENSBTAP00000011809/1-585 AIPYALSLHL DLEPMEKRQL IGTTTIIIVL FTILLLGGST MPLIRLVDIE 501 550 bmy_02934T0/1-319 DARARRRNKK DVNLSKTEKM GNTVESEHLS ELTEEEYEAH YIRRQDLKGF ENSTTRP00000001898/1-579 DARARRRNKK DVNLSKTEKM GHTVESEHLS ELTEEEYEAH YVRRQDLKGF BACU011337/1-583 DARARRRSKK DVNLSKTEKM GNTIESEHLS ELTEEEYEAH YIRRQDLKGF ENSP00000416418/1-597 DAKAHRRNKK DVNLSKTEKM GNTVESEHLS ELTEEEYEAH YIRRQDLKGF ENSBTAP00000011809/1-585 GAKARRRGRK DVNLSKTEKM GNTVESEHLS ELTEEEYEAH YIRRQDLKGF 551 600 bmy_02934T0/1-319 LWLDAKYLNP FFTRRLTQEV GRRPGVPCLP PSGPAVAKSR VGREDPHAGL ENSTTRP00000001898/1-579 LWLDAKL--P FFTRRLTQ-- ---------- ---------- ---EDLH--- BACU011337/1-583 LWLDAKYLNP FFTRRLTQ-- ---------- ---------- ---EDLH--- ENSP00000416418/1-597 VWLDAKYLNP FFTRRLTQ-- ---------- ---------- ---EDLH--- ENSBTAP00000011809/1-585 LWLDAKYLNP FFTRRLTR-- ---------- ---------- ---EDLH--- 601 650 bmy_02934T0/1-319 GPPPRAHPDE NPHQQVVRRG APRPLRLRGR RAGAAVTER- -DAVAPGQPG ENSTTRP00000001898/1-579 ---------- ---------- -------HGR IQMKTLTNKW YEEVRQGPSG BACU011337/1-583 ---------- ---------- -------HGR IQMKTLTNKW YEEVRQGPSG ENSP00000416418/1-597 ---------- ---------- -------HGR IQMKTLTNKW YEEVRQGPSG ENSBTAP00000011809/1-585 ---------- ---------- -------HGR IQMKTLTNKW YEEVRQGPSG 651 700 bmy_02934T0/1-319 PQQCHPAYPR LPGRTPSKGP RGVRGIVICH AEVPERRNPA VDPLCRASRE ENSTTRP00000001898/1-579 SED------- ---------- ---------- ---------- ---------- BACU011337/1-583 SED------- ---------- ---------- ---------- ---------- ENSP00000416418/1-597 SED------- ---------- ---------- ---------- ---------- ENSBTAP00000011809/1-585 SED------- ---------- ---------- ---------- ---------- 701 750 bmy_02934T0/1-319 RGVPLPPSLA TAFITGALPC WTGVGTSRAR SRPPLPCASS RRLRPQQQRF ENSTTRP00000001898/1-579 ---------- ---------- ---------- ---------- ---D-EQELL BACU011337/1-583 ---------- ---------- ---------- ---------- ---D-EQELL ENSP00000416418/1-597 ---------- ---------- ---------- ---------- ---D-EQELL ENSBTAP00000011809/1-585 ---------- ---------- ---------- ---------- ---DDEQELL 751 800 bmy_02934T0/1-319 SPKRQAQKP ENSTTRP00000001898/1-579 --------- BACU011337/1-583 --------- ENSP00000416418/1-597 --------- ENSBTAP00000011809/1-585 ---------