KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:44:57 2014 Check: 00 .. Name: ENSP00000371586/1-375 Len: 417 Check: 114 Weight: 1.00 Name: ENSBTAP00000011848/1-416 Len: 417 Check: 7862 Weight: 1.00 Name: ENSTTRP00000009768/1-409 Len: 417 Check: 9196 Weight: 1.00 Name: bmy_01578T0/1-324 Len: 417 Check: 8630 Weight: 1.00 // 1 50 ENSP00000371586/1-375 ---------- ---MMCQS-- ---------- ---------- ------EARQ ENSBTAP00000011848/1-416 MPGKSTRPLP APRPCCAPCP FWSPRLAGMQ GTGSTRSTGS ESWRSWAWTS ENSTTRP00000009768/1-409 MAASVGQGCL RLLRGVAPWR SRRRHCEDIA LSHFLQSLRK LPLRTFSTNA bmy_01578T0/1-324 ---------- -MVRCCGP-- ---------- ---------- --------RL 51 100 ENSP00000371586/1-375 GPELRAAKWL HFPQLALRRR LGQLSCMSRP ALKLRSWPLT VLYYLLPFGA ENSBTAP00000011848/1-416 RPSLLVTGRL HFPQLALRRR LGQLSCMSKP ALKLRSWPLT VLYYLLPLGA ENSTTRP00000009768/1-409 RKVHTAPAR- ---TLSLLRP LLFLVATGGG YAGYRQYEKY QEREWEKLGL bmy_01578T0/1-324 RPNLASP--- ---RLDLQK- ---------- ---------- ---------- 101 150 ENSP00000371586/1-375 -LRPLSRVGW RPVSRVALYK SVPTRLLSRA WGRLNQVELP HWLRRPVYSL ENSBTAP00000011848/1-416 -LRPLSRVGW RPVSRVALYK SVPTRLLSRA WGRLNQVELP HWLRRPVYSL ENSTTRP00000009768/1-409 EIPPKLAGHW E----VALYK SVPTRLLSRA WGRLNQVELP HWLRRPVYSL bmy_01578T0/1-324 ---------- -----VALYK SVPTRLLSRA WGRLNQVELP HWLRRPVYSL 151 200 ENSP00000371586/1-375 YIWTFGVNMK EAAVEDLHHY RNLSEFFRRK LKPQARPVCG LHSVISPSDG ENSBTAP00000011848/1-416 YIWTFGVNMK EAAVEDLHHY RNLSEFFRRK LKPQARPVCG LHSVISPSDG ENSTTRP00000009768/1-409 YIWTFGVNMK EAAVEDLHHY RNLSEFFRRK LKPQARPVCD LHSVISPSDG bmy_01578T0/1-324 YIWTFGVNMK EAAVEDLHHY RNLSEFFRRK LKPQARPVCG LHSVISPSDG 201 250 ENSP00000371586/1-375 RILNFGQVKN CEVEQVKGVT YSLESFLGPR MCTEDLPFPP AASCDSFKNQ ENSBTAP00000011848/1-416 KILNFGQVKN CEVEQVKGVT YSLESFLGPR TPSEDLPFPP ATPHSSFRSQ ENSTTRP00000009768/1-409 KILNFGQVKN CEVEQVKGVT YSLESFLGPR IPAEDLPFPP ATSCGSFRSQ bmy_01578T0/1-324 KILNFGQVKN CEVEQVKGVT YSLESFLGPR IPAEDLPFPP ATSCGSFRSQ 251 300 ENSP00000371586/1-375 LVTREGNELY HCVIYLAPGD YHCFHSPTDW TVSHRRHFPG SLMSVNPGMA ENSBTAP00000011848/1-416 LVTREGNELY HCVIYLAPGD YHCFHSPTDW TVSHRRHFPG SLMSVNPGMA ENSTTRP00000009768/1-409 LVTREGNELY HCVIYLAPGD YHCFHSPTDW TVSHRRHFPG SLMSVNPGMA bmy_01578T0/1-324 LVTREGNELY HCVIYLAPGD YHCFHSPTDW TVSHRRHFPG SLMSVNPGMA 301 350 ENSP00000371586/1-375 RWIKELFCHN ERVVLTGDWK HGFFSLTAVG ATNVGSIRIY FDRDLHTNSP ENSBTAP00000011848/1-416 RWIKELFCHN ERVVLTGDWK HGFFSLTAVG ATNVGSIRIY FDRDLHTNSP ENSTTRP00000009768/1-409 RWIKELFCHN ERVVLTGDWK HGFFSLTAVG ATNVGSIRIY FDQDLHTNSP bmy_01578T0/1-324 RWIKELFCHN ERVVLTGDWK HGFFSLTAVG ATNVGSIRIY FDRDLHTNSP 351 400 ENSP00000371586/1-375 RHSKGSYNDF SFVTHTNREG VPMRKGEHLG EFNLGSTIVL IFEAPKDFNF ENSBTAP00000011848/1-416 RYSKGSYNDF SFVTHANKEG IPMRKGEHLG EFNLGSTIVL IFEAPKDFNF ENSTTRP00000009768/1-409 RYSKGSYNDF SFVTHMNKEG IPMRKGEHLG EFNLGSTIVL IFEAPKDFNF bmy_01578T0/1-324 RYSKGSYNDF SFVTHTNKEG IPMRKGEHLG EFNLGSTIVL IFEAPKDFNF 401 450 ENSP00000371586/1-375 QLKTGQKIRF GEALGSL ENSBTAP00000011848/1-416 RLQAGQKIRF GEALGSL ENSTTRP00000009768/1-409 KLKAGQKIRF GEALGSL bmy_01578T0/1-324 KLKAGQKIRF GEALGSL