KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:01 2014 Check: 00 .. Name: bmy_04512T0/1-856 Len: 958 Check: 3719 Weight: 1.00 Name: ENSP00000309714/1-911 Len: 958 Check: 8882 Weight: 1.00 Name: ENSBTAP00000011874/1-888 Len: 958 Check: 7191 Weight: 1.00 Name: BACU003677/1-891 Len: 958 Check: 8287 Weight: 1.00 Name: ENSTTRP00000012271/1-905 Len: 958 Check: 7203 Weight: 1.00 // 1 50 bmy_04512T0/1-856 MNTRCSKPER EGGQKWEVGG IIQEKNSTCP QRGFYTVLCI NSAVVDKCMG ENSP00000309714/1-911 MPPRRSIVEV K--------- VLDVQKRRVP NKHYVYIIRV T--------- ENSBTAP00000011874/1-888 ---------- ---------- --------LP SSLQVYIIRV T--------- BACU003677/1-891 ---------- ---------- ---------- --MKVYIIRV T--------- ENSTTRP00000012271/1-905 MPPRRSIVEV K--------- VLDVQKRRVP NKHYVYIIRV T--------- 51 100 bmy_04512T0/1-856 AITHSVWTLA HNSVLCVTSL GPWDWLGFYT HSLEMLWDGK SQFP-NGTTH ENSP00000309714/1-911 ------WSSG STEAIYRR-- ----YSKFFD LQMQML---- DKFPMEGGQK ENSBTAP00000011874/1-888 ------WSSG STEAIYRR-- ----YSKFFD LQMQML---- DKFPMEGGQK BACU003677/1-891 ------WSSG STEAIYRR-- ----YSKFFD LQMQML---- DKFPMEGGQK ENSTTRP00000012271/1-905 ------WSSG STEAIYRR-- ----YSKFFD LQMQML---- DKFPMEGGQK 101 150 bmy_04512T0/1-856 SNTEKILTHY SFPPLF---- ---------F PVQGTCWEKE IWVQVTRLPW ENSP00000309714/1-911 DPKQRIIPFL PGKILFRRSH IRDVAVKRLI PIDEYC---K ALIQLPPYIS ENSBTAP00000011874/1-888 DPKQRIIPFL PGKILFRRSH IRDVAVKRLI PIDEYC---K ALIQLPPYIS BACU003677/1-891 DPKQRIIPFL PGKILFRRSH IRDVAVKRLI PIDEYC---K ALIQLPPYIS ENSTTRP00000012271/1-905 DPKQRIIPFL PGKILFRRSH IRDVAVKRLI PIDEYC---K ALIQLPPYIS 151 200 bmy_04512T0/1-856 GPPISLRYPQ --PGRVNGQ- ---NMVTEPR SGGDLTSVDP MVLEQYVVVA ENSP00000309714/1-911 QCDEVLQFFE TRPEDLNPPK E--EHIGKKK SGGDQTSVDP MVLEQYVVVA ENSBTAP00000011874/1-888 QCDEVLQFFE TRPEDLNPPK E--EHVGKKK SGGDLTSVDP MVLEQYVVVA BACU003677/1-891 QCDEVLQFFE TRPEDLNPPK EGDGKLGKKK SGGDLTSVDP MVLEQYVVVA ENSTTRP00000012271/1-905 QCDEVLQFFE TRPEDLNPPK E--EHVGKKK SGGDLTSVDP MVLEQYVVVA 201 250 bmy_04512T0/1-856 DYQKQESSEI SLSVGQVVDI IEKNESGWWF VSTAEEQGWV PATCLEGQDG ENSP00000309714/1-911 NYQKQESSEI SLSVGQVVDI IEKNESGWWF VSTAEEQGWV PATCLEGQDG ENSBTAP00000011874/1-888 DYQKQESSEI SLSVGQVVDI IEKNESGWWF VSTAEEQGWV PATCLEGQDG BACU003677/1-891 DYQKQESSEI SLSVGQVVDI IEKNESGWWF VSTAEEQGWV PATCLEGQDG ENSTTRP00000012271/1-905 DYQKQESSEI SLSVGQVVDI IEKNESGWWF VSTAEEQGWV PATCLEGQDG 251 300 bmy_04512T0/1-856 VQDEFSLQPE EEEKYTVIYP YTARDQDEMN LERGAVVEVI QKNLEGWWKI ENSP00000309714/1-911 VQDEFSLQPE EEEKYTVIYP YTARDQDEMN LERGAVVEVI QKNLEGWWKI ENSBTAP00000011874/1-888 VQDEFSLQPE EEEKYTVIYP YTARDQDEMN LERGAVVEVI QKNLEGWWKI BACU003677/1-891 VQDEFPLQPE EEEKYTVIYP YTARDQDEMN LERGAVVEVI QKNLEGWWKI ENSTTRP00000012271/1-905 VQDEFSLQPE EEEKYTVIYP YTARDQDEMN LERGAVVEVI QKNLEGWWKI 301 350 bmy_04512T0/1-856 RYQGKEGWAP ASYLKKSSGE PLPPKLGPGS PAHAGVLELD GVSRQQNSVG ENSP00000309714/1-911 RYQGKEGWAP ASYLKKNSGE PLPPKPGPGS PSHPGALDLD GVSRQQNAVG ENSBTAP00000011874/1-888 RYQGKEGWAP ASYLRKSSGE PLPPKLAPGS PAHVGVLELD GVSRQQNSVG BACU003677/1-891 RYQGKEGWAP ASYLKKSSGE PLPPKLGPGS PAHAGVLELD GVSRQQNSVG ENSTTRP00000012271/1-905 RYQGKEGWAP ASYLKKSSGE PVPPKLGPGS PAHAGVLELD GVSRQQNSVG 351 400 bmy_04512T0/1-856 REKELLNNQR DGRL------ ---------- ---------- ---------- ENSP00000309714/1-911 REKELLSSQR DGRFEGRPVP DGDAKQRSPK MRQRPPPRRD MTIPRGLNLP ENSBTAP00000011874/1-888 REKELLNNQR DGRLEGRPVP DGDIRQRSPK MRQRPPPRRD MTIPRGLNLP BACU003677/1-891 REKELLNNQR DGRFEGRPAP DSDVKQRSPK MRQRPPPRRD MTIPRG--LP ENSTTRP00000012271/1-905 REKELLNNQR DGRFEGRPAP DSDVKQRSPK MRQRPPPRRD MTIPRG--LP 401 450 bmy_04512T0/1-856 ---------- ---------- ---------- ----EVIEKN LSGWWYIQIE ENSP00000309714/1-911 KPPIPPQVEE EYYTIAEFQT TIPDGISFQA GLKVEVIEKN LSGWWYIQIE ENSBTAP00000011874/1-888 KPPIPPQVEE EYYTIAEFQT TIPDGISFQA GLKVEVIEKN LSGWWYIQIE BACU003677/1-891 KPPIPPQVEE EYYTIAEFQT TIPDGISFQA GLKVEVIEKN LSGWWYIQIE ENSTTRP00000012271/1-905 KPPIPPQVEE EYYTIAEFQT TIPDGISFQA GLKVEVIEKN LSGWWYIQIE 451 500 bmy_04512T0/1-856 DKEGWAPATF IDKYKKTSNA SRPNFLAPLP NEVTQLRLGD AAAMENCTGS ENSP00000309714/1-911 DKEGWAPATF IDKYKKTSNA SRPNFLAPLP HEVTQLRLGE AAALENNTGS ENSBTAP00000011874/1-888 DKEGWAPATF IDKYKKTSNA SRPNFLAPLP NEVAQLRLGD AAAMENSSGS BACU003677/1-891 DKEGWAPATF IDKYKKTSNA SRPNFLAPLP NEVTQLRLGD AAAMENCTGS ENSTTRP00000012271/1-905 DKEGWAPATF IDKYKKTSNA SRPNFLAPLP NEVTQLRLGD AAAMENCTGS 501 550 bmy_04512T0/1-856 EAVGPARPLP DAPHGAVDSA MPWSKDWKGG KEVPRKASSD TSSCAGYEEI ENSP00000309714/1-911 EATGPSRPLP DAPHGVMDSG LPWSKDWKGS KDVLRKASSD MSASAGYEEI ENSBTAP00000011874/1-888 EASGPSRPLP DAPHSAGDSG TPWAKDWKGG KEVLRKASSD TSSCAGYEEI BACU003677/1-891 EAVGPSRPLP DAPHGAVDSA MPWSKDWKGG KEVPRKASSD TSSCAGYEEI ENSTTRP00000012271/1-905 EAVGPSRPLP DAPHGAVDSA MPWSKDWKGG KEVPRKASSD TSSCAGYEEI 551 600 bmy_04512T0/1-856 SDPDLEEKPS LPPRKESIIK SEGEL----Q ERQRMEQLRG SSPKPPGMIL ENSP00000309714/1-911 SDPDMEEKPS LPPRKESIIK SEGELLERER ERQRTEQLRG PTPKPPGVIL ENSBTAP00000011874/1-888 SDPDLEEKPS LPPRKESIIK SEEEL----Q ERQRMEQFRG SSPKPPGMIL BACU003677/1-891 SDPNLEEKPS LPPRKESIIK SEGEL----Q ERQRMEQLRG SSPKPPGMIL ENSTTRP00000012271/1-905 SDPDLEEKPS LPPRKESIIK SEGEL----Q ERQRMEQLRG SSPKPPGMIL 601 650 bmy_04512T0/1-856 PMIPTKYTPP ARDSRRPEPK PDKSKLFQLK NEMGLECGHK VLAKEVKKPN ENSP00000309714/1-911 PMMPAKHIPP ARDSRRPEPK PDKSRLFQLK NDMGLECGHK VLAKEVKKPN ENSBTAP00000011874/1-888 PMIPAKHALP ARDGRKAEPK PEKSKLFQLK NETGLECGHR VLAKEVKKPS BACU003677/1-891 PMIPTKYTPP ARDSRRPEPK PDKSKLFQLK NEMGLECGHK VLAKEVKKPN ENSTTRP00000012271/1-905 PMIPTKHTPP ARDSRRPESK PDKSKLFQLK NEMGLECGHK VLAKEVKKPN 651 700 bmy_04512T0/1-856 LRPVSKSKAD PPEEKPEAVP QNPFLKSKPQ VRPKPAPSPR TEPPQGEDQV ENSP00000309714/1-911 LRPISKSKTD LPEEKPDATP QNPFLKSRPQ VRPKPAPSPK TEPPQGEDQV ENSBTAP00000011874/1-888 LRPISKSKAG LPEEKPEAVP QNLFLKSKPQ VRPKPAPSPR TEPPQGEDQV BACU003677/1-891 LRPVSKSKAD PPEEKLEAVP QNPFLKSKPQ VRPKPAPSSR TEPPQGEDQV ENSTTRP00000012271/1-905 LRPVSKSKAD PPEERPEAVP QNPFLKSKPQ VRPKPAPSPR TEPPQGEDQV 701 750 bmy_04512T0/1-856 DICNLRSKLR PAKSQEKPSL DGESSPQAGG GQDVAISRGF LPGEGPGRAQ ENSP00000309714/1-911 DICNLRSKLR PAKSQDKSLL DGE-GPQAVG GQDVAFSRSF LPGEGPGRAQ ENSBTAP00000011874/1-888 DICNLRSKLR PAKSQEKASV DGESSHQAGG GQDGAFSRGF PPGEGPGRAQ BACU003677/1-891 DICNLRSKLR PAKSQEKPSL DGESSPQAGG GQDVAISRGF LPGEGPGRAQ ENSTTRP00000012271/1-905 DICNLRSKLR PAKSQEKPSL DGESSPQAGG GQDVAISRGF LPGEGPGRAQ 751 800 bmy_04512T0/1-856 DRTSKQNGLS PKETSCRAPP RPAKTADPVP KNVPVPLLEA SQQRPVVPPR ENSP00000309714/1-911 DRTGKQDGLS PKEISCRAPP RPAKTTDPVS KSVPVPLQEA PQQRPVVPPR ENSBTAP00000011874/1-888 DRTSKQEGPS PKEAPCRAPP RPAKTTDPVP KATPVPLQEA SLQRPVVPPR BACU003677/1-891 DRTSKQNGLS PKETSCRAPP RPAKTADPVS KNVPVPLPEA SQQRPVVPPR ENSTTRP00000012271/1-905 DRTSKQDGLS PKETSCRAPP RPAKTADPVP KNVPVPLQEA SQQRPVVPPR 801 850 bmy_04512T0/1-856 RPPPPKKSSS SSRPLPEVRG -------PQR EPSEGKAAPV PGRALLVPPK ENSP00000309714/1-911 RPPPPKKTSS SSRPLPEVRG -------PQC EGHESRAAPT PGRALLVPPK ENSBTAP00000011874/1-888 RPPPPKKTSS SSRPLPEVRG -------PQR ESSEGKAAPA PGRALLVPPK BACU003677/1-891 RPPPPKKSSS SSRPLPEVRG PLPEVRGPQR EPNEGKAAPV PGRALLVPPK ENSTTRP00000012271/1-905 RPPPPKKTSS SSRPLPEVRG -------PRS EGHEGKAAPV PGRALLVPPK 851 900 bmy_04512T0/1-856 AKPFLSNSSG GQDDMRGKGG LGPRMMGKMG ENKEKVAAAP FPNADGPKD- ENSP00000309714/1-911 AKPFLSNSLG GQDDTRGKGS LGPWGTGKIG ENREKAAAAS VPNADGLKDS ENSBTAP00000011874/1-888 AKPFLSNSSG GQDDMRGKGG LGPRMMGKTG ENKEKVAAGP FPSTDGPKD- BACU003677/1-891 AKPFLSNSSG GQDDMRGKGG LGPRMMGKMG ENKEKVAAAP FPNADGPKD- ENSTTRP00000012271/1-905 AKPFLSNSSG GQDDMRGKGG LGPRMMGKMG ENKEKVAAAP FPNADGPKD- 901 950 bmy_04512T0/1-856 LYVAVANFEG DEGTSSFQEG TVFEVREKNS SGWWFCQVQS GAPSWEGWIP ENSP00000309714/1-911 LYVAVADFEG DKDTSSFQEG TVFEVREKNS SGWWFCQVLS GAPSWEGWIP ENSBTAP00000011874/1-888 LYVAVANFEG DQDTSSFQEG TVFEVREKNS SGWWFCQVQS GAPSWEGWIP BACU003677/1-891 LYVAVANFEG DEGTSSFQEG TVFEVREKNS SGWWFCQVQS GAPSWEGWIP ENSTTRP00000012271/1-905 LYVAVANFEG DEGTSGFQEG TVFEVREKNS SGWWFCQVQS GAPSWEGWIP 951 1000 bmy_04512T0/1-856 SNYLRKKP ENSP00000309714/1-911 SNYLRKKP ENSBTAP00000011874/1-888 SNYLRKKP BACU003677/1-891 SNYLRKKP ENSTTRP00000012271/1-905 SNYLRKKP