KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:05 2014 Check: 00 .. Name: ENSTTRP00000013640/1-955 Len: 1017 Check: 2044 Weight: 1.00 Name: ENSP00000316454/1-963 Len: 1017 Check: 5460 Weight: 1.00 Name: bmy_07788T0/1-852 Len: 1017 Check: 3429 Weight: 1.00 Name: BACU003502/1-860 Len: 1017 Check: 5767 Weight: 1.00 Name: ENSBTAP00000011884/1-816 Len: 1017 Check: 4352 Weight: 1.00 // 1 50 ENSTTRP00000013640/1-955 ----EGRGGS PGSSGDGSGQ QSSGVAQSPT QQPPTQQL-- -PQQQTPPKL ENSP00000316454/1-963 MAERGGAGGG PGGAGGGSGQ RGSGVAQSPQ QPPPQQQQQQ PPQQPTPPKL bmy_07788T0/1-852 ---------- ---------- ---------- ---------- ---------- BACU003502/1-860 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011884/1-816 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000013640/1-955 AQATSSSSST SAAA-ASSSS STSTTMAVAV ASGSATPGGP GPGRTPAPVQ ENSP00000316454/1-963 AQATSSSSST SAAAASSSSS STSTSMAVAV ASGSAPPGGP GPGRTPAPVQ bmy_07788T0/1-852 ---------- -----MNRGD SSLTNLNVFQ EH-------- ---------- BACU003502/1-860 ---------- ---------- --LLSLNFS- ---------- ---------- ENSBTAP00000011884/1-816 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000013640/1-955 MNLYATWEVD RSSSSCVPRL FSLTLKKLVM LKEMDKDLNS VVIAVKLQXX ENSP00000316454/1-963 MNLYATWEVD RSSSSCVPRL FSLTLKKLVM LKEMDKDLNS VVIAVKLQGS bmy_07788T0/1-852 ---------- --------RL FSLTLKKLVM LKEMDKDLNS VVIAVKLQGS BACU003502/1-860 ---------- --------RL FSLTLKKLVM LKEMDKDLNS VVIAVKLQGS ENSBTAP00000011884/1-816 ---------- ---------- ---------- ---------- -------QGS 151 200 ENSTTRP00000013640/1-955 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000316454/1-963 KRILRSNEIV LPASGLVETE LQLTFSLQYP HFLKRDANKL QIMLQRRKRY bmy_07788T0/1-852 KRILRSNEII LPASGLVETE LQLTFSLQYP HFLKRDANKL QIMLQRRKRY BACU003502/1-860 KRILRSNEII LPASGLVETE LQLTFSLQYP HFLKRDANKL QIMLQRRKRY ENSBTAP00000011884/1-816 KRILRSNEII LPASGLVETE LQLTFSLQYP HFLKRDANKL QIMLQRRKRY 201 250 ENSTTRP00000013640/1-955 XXXXXXXXXX XXXXXXXXXX VMQHPNEGAL VLGLHSNVKD VSVPVAEIKI ENSP00000316454/1-963 KNRTILGYKT LAVGLINMAE VMQHPNEGAL VLGLHSNVKD VSVPVAEIKI bmy_07788T0/1-852 KNRTILGYKT LAVGLINMAE VMQHPNEGAL VLGLHSNVKD VSVPVAEIKI BACU003502/1-860 KNRTILGYKT LAVGLINMAE VMQHPNEGAL VLGLHSNVKD VSVPVAEIKI ENSBTAP00000011884/1-816 KNRTILGYKT LAVGLINMAE VMQHPNEGAL VLGLHSNVKD VSVPVAEIKI 251 300 ENSTTRP00000013640/1-955 YSLSSQPIDH EGIKSKLSDR SPDIDNYSEE EEESFSSEQE GSDDPLHGQD ENSP00000316454/1-963 YSLSSQPIDH EGIKSKLSDR SPDIDNYSEE EEESFSSEQE GSDDPLHGQD bmy_07788T0/1-852 YSLSSQPIDH EGIKSKLSDR SPDIDNYSEE EEESFSSEQE GSDDPLHGQD BACU003502/1-860 YSLSSQPIDH EGIKSKLSDR SPDIDNYSEE EEESFSSEQE GSDDPLHGQD ENSBTAP00000011884/1-816 YSLSSQPIDH EGIKSKLSDR SPDVDNYSEE EEESFSSEQE GSDDPLHGQD 301 350 ENSTTRP00000013640/1-955 LFYEDEDLRK VKKTRRKLTS TSAITRQPNI KQKFVALLKR FKVSDEVGFG ENSP00000316454/1-963 LFYEDEDLRK VKKTRRKLTS TSAITRQPNI KQKFVALLKR FKVSDEVGFG bmy_07788T0/1-852 LFYEDEDLRK VKKTRRKLTS TSAITRQPNI KQKFVALLKR FKVSDEVGFG BACU003502/1-860 LFYEDEDLRK VKKTRRKLTS TSAITRQPNI KQKFVALLKR FKVSDEVGFG ENSBTAP00000011884/1-816 LFYEDEDLRK VKKTRRKLTS TSAITRQPNI KQKFVALLKR FKVSDEVGFG 351 400 ENSTTRP00000013640/1-955 LEHVSREQIR EVEEDLDELY DSLEMYNPSD SGPEMEETES ILSTPKPKLK ENSP00000316454/1-963 LEHVSREQIR EVEEDLDELY DSLEMYNPSD SGPEMEETES ILSTPKPKLK bmy_07788T0/1-852 LEHVSREQIR EVEEDLDELY DSLEMYNPSD SGPEMEETES ILSTPKPKLK BACU003502/1-860 LEHVSREQIR EVEEDLDELY DSLEMYNPSD SGPEMEETES ILSTPKPKLK ENSBTAP00000011884/1-816 LEHVSREQIR EVEEDLDELY DSLEMYNPSD SGPEMEETES VLSTPKPKLR 401 450 ENSTTRP00000013640/1-955 PFFEGMSQSS SQTEIGSLNS KGSLGKDTTS P--------M ELAALEKVKS ENSP00000316454/1-963 PFFEGMSQSS SQTEIGSLNS KGSLGKDTTS P--------M ELAALEKIKS bmy_07788T0/1-852 PFFEGMSQSS SQTEIGSLNS KGSLGKDTTS PVSKTNGCGM ELAALEKVKS BACU003502/1-860 PFFEGMSQSS SQTEIGSLNS KGSLGKDTTS PVSKTNGCGM ELAALEKVKS ENSBTAP00000011884/1-816 PFFEGMSQSS SQTEIGSLNS KGSLGKDTTS P--------M ELAALEKVKS 451 500 ENSTTRP00000013640/1-955 AWIKNQDDSL TETDTLEITD QDMFGDVSAS LVVPEKVKTP MKSSKTDLQG ENSP00000316454/1-963 TWIKNQDDSL TETDTLEITD QDMFGDASTS LVVPEKVKTP MKSSKTDLQG bmy_07788T0/1-852 AWIKNQDDSL TETDTLEITD QDMLGDVSAS LVVPEKVKTP MKSSKTDLQG BACU003502/1-860 AWIKNQDDSL TETDTLEITD QDMFGDVSAS LVVPEKVKTP MKSSKTDLQG ENSBTAP00000011884/1-816 ARIKNQDDSL TETDTLEITD QDMFGDVSTS LVVPEKVKTP MKSSKTDLQG 501 550 ENSTTRP00000013640/1-955 SASP------ ---------- ---------- ---------- ---------- ENSP00000316454/1-963 SASP------ ---------- ---------- ---------- ---------- bmy_07788T0/1-852 SASPRYSGLE EAPKASGRMR EARQEGPREE GAGHGSGSGG CLTASFDVCG BACU003502/1-860 SASP------ ---------- ---------- ---------- ---------- ENSBTAP00000011884/1-816 SASP------ ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000013640/1-955 SKMDGVHTPR QKRGTPLKER QLSKPLSERT NSSDSERSPD LGHSTQIPRK ENSP00000316454/1-963 SKVEGVHTPR QKRSTPLKER QLSKPLSERT NSSDSERSPD LGHSTQIPRK bmy_07788T0/1-852 SKVDGVHTPR QKRSTPLKER QLSKPLSERT NSSDSERSPD LGHSTQIPRK BACU003502/1-860 SKVDGVHTPR QKRSTPLKER QLSKPLSERT NSSDSERSPD LGHSTQIPRK ENSBTAP00000011884/1-816 SKVEGVHTPR QKRSTPLKER QLSKPLSERT NSSDSERSPD LGHSTQIPRK 601 650 ENSTTRP00000013640/1-955 VVYDQLNQIL VSDAALPENV ILVSTADWQG QYVAELLQDQ RKPVVCTCST ENSP00000316454/1-963 VVYDQLNQIL VSDAALPENV ILVNTTDWQG QYVAELLQDQ RKPVVCTCST bmy_07788T0/1-852 VVYDQLNQIL VSDAALPENV ILVNTTDWQG QYVAELLQDQ RKPVVCTCST BACU003502/1-860 VVYDQLNQIL VSDAALPENV ILVNTTDWQG QYVAELLQDQ RKPVVCTCST ENSBTAP00000011884/1-816 VVYDQLNQIL VSDAALPENV ILVNTADWQG QYVAELLQDQ RKPVVCTCST 651 700 ENSTTRP00000013640/1-955 VEVQAVLSAL LTRIQRYCNC NSSMPRPVKV AAVGGQSYLS SILRFFVKSL ENSP00000316454/1-963 VEVQAVLSAL LTRIQRYCNC NSSMPRPVKV AAVGGQSYLS SILRFFVKSL bmy_07788T0/1-852 VEVQAVLSAL LTRIQRYCNC NSSMPRPVKV AAVGGQSYLS SILRFFVKSL BACU003502/1-860 VEVQAVLSAL LTRIQRYCNC NSSMPRPVKV AAVGSQSYLS SILRFFVKSL ENSBTAP00000011884/1-816 VEVQAVLSAL LTRIQRYCNC NSSMPRPVKV AAVGGQSYLS SILRFFVKSL 701 750 ENSTTRP00000013640/1-955 ASKTSDWLGY MRFLIIPLGS HPVAKYLGSV DSRYSSIFLD SGWRDLFNRS ENSP00000316454/1-963 ANKTSDWLGY MRFLIIPLGS HPVAKYLGSV DSKYSSSFLD SGWRDLFSRS bmy_07788T0/1-852 ASKTSDWLGY MRFLIIPLGS HPVAKYLGSV DSRYSSTFLD SGWRDLFNRS BACU003502/1-860 ASKTSDWLGY MRFLIIPLGS HPVAKYLGSV DSRYSSTFLD SGWRDLFNRS ENSBTAP00000011884/1-816 ASKTSDWLGY MRFLIIPLGS HPVAKYLGSV DSRYSSTFLD PGWRDLFSRS 751 800 ENSTTRP00000013640/1-955 EPPVSEHLDV VGRVMQYVSG AGVTHQLPVA EAMLTCRHKF PDEDSYQKFI ENSP00000316454/1-963 EPPVSEQLDV AGRVMQYVNG AATTHQLPVA EAMLTCRHKF PDEDSYQKFI bmy_07788T0/1-852 EPPVSEHLDV VGRVMQYISG AGVTHQLPVA EAMLTCRHKF PDEDSYQKFI BACU003502/1-860 EPPVSEHLDV VGRVMQYISG AGVTHQLPVA EAMLTCRHKF PDEDSYQKFI ENSBTAP00000011884/1-816 EPPVSEQLDV VGRVMQYVNG AAVTHQLPVA EAMLTCRHKF PDEDSYQKFI 801 850 ENSTTRP00000013640/1-955 PFIGVVKVGL VEDSPSTTGD GDDSPVVSLT VPSTSPPSSS GLSRDAMATP ENSP00000316454/1-963 PFIGVVKVGL VEDSPSTAGD GDDSPVVSLT VPSTSPPSSS GLSRDATATP bmy_07788T0/1-852 PFIGVVKVGL VEDSPSTTGD GDDSPVVSLT VPSTSPPSSS GLSRDAMATP BACU003502/1-860 PFIGVVKVGL VEDSPSTTGD GDDSPVVSLT VPSTSPPSSS GLSRDAMATP ENSBTAP00000011884/1-816 PFIGVVKVGL VEDSPSTTGD GDDAPVVNLT VPSTSPPSSS GLSRDATATP 851 900 ENSTTRP00000013640/1-955 PSSPSMSSAL AVVGSPSSPY GDVIGLQVDY WLGHPGERRR EGDKRDASSK ENSP00000316454/1-963 PSSPSMSSAL AIVGSPNSPY GDVIGLQVDY WLGHPGERRR EGDKRDASSK bmy_07788T0/1-852 PSSPSMSSAL AVVG------ ---------- ---------- -------GCD BACU003502/1-860 PSSPSMSSAL AVVGSPSSPY GDVIGLQVDY WLGHPGERRR EGDKRDASSK ENSBTAP00000011884/1-816 PSSPSMSSAL AVVGSPSSPY GDVIGLQVDY WLGHPGERRR EGDKRDASSK 901 950 ENSTTRP00000013640/1-955 NTLKSVFRSV QVSRLPHGGE AQLSGTMAMT VVTKEKNKKV PTIFLSKKPR ENSP00000316454/1-963 NTLKSVFRSV QVSRLPHSGE AQLSGTMAMT VVTKEKNKKV PTIFLSKKPR bmy_07788T0/1-852 KAVPACF--- ---------- ---------- --------PV PTIFLSKKPR BACU003502/1-860 NTLKSVFRSV QVSRLPHGGE AQLSGTMAMT VVTKEKNKKV PTIFLSKKPR ENSBTAP00000011884/1-816 NTLKSVFRSV QVSRLPHGGE AQLSGTMAMT VVTKEKNKKV PTIFLSKKPR 951 1000 ENSTTRP00000013640/1-955 EKEVDSKSQV IEGISRLICS AKQQQTMLRV SIDGVEWSDI KFFQLAAQWP ENSP00000316454/1-963 EKEVDSKSQV IEGISRLICS AKQQQTMLRV SIDGVEWSDI KFFQLAAQWP bmy_07788T0/1-852 EKEVDSKSQV IEGISRLICS AKQQQTMLRV SIDGVEWSDI KFFQLAAQWP BACU003502/1-860 EKEVDSKSQV IEGISRLICS AKQQQTMLRV SIDGVEWSDI KFFQLAAQWP ENSBTAP00000011884/1-816 EKEVDSKSQV IEGISRLICS AKQQQTMLRV SIDGVEWSDI KFFQLAAQWP 1001 1050 ENSTTRP00000013640/1-955 THVKHFPVGL FSGSKAT ENSP00000316454/1-963 THVKHFPVGL FSGSKAT bmy_07788T0/1-852 THVKHFPVGL FSGSKAT BACU003502/1-860 THVKHFPVGL FSGSKAT ENSBTAP00000011884/1-816 THVKHFPVGL FSGSKAT