KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:05 2014 Check: 00 .. Name: BACU017959/1-392 Len: 891 Check: 5135 Weight: 1.00 Name: bmy_19739T0/1-598 Len: 891 Check: 7942 Weight: 1.00 Name: ENSTTRP00000002519/1-380 Len: 891 Check: 3540 Weight: 1.00 Name: ENSP00000373518/1-765 Len: 891 Check: 5725 Weight: 1.00 Name: ENSBTAP00000011888/1-755 Len: 891 Check: 8995 Weight: 1.00 // 1 50 BACU017959/1-392 ---------- ---------- ---------- ---------- ---------- bmy_19739T0/1-598 ---------- --------MS AEEDAKWLQW VTHQFETIAG EDREINLQEL ENSTTRP00000002519/1-380 ---------- ---------- ---------- ---------- ---------- ENSP00000373518/1-765 MNTSGDPAQT GPEGCRGTMS AEEDARWLRW VTQQFKTIAG EDGEISLQEF ENSBTAP00000011888/1-755 ---------- --------MN AEEDAKWLQW VTHQFKTIAG EDGEINLQDF 51 100 BACU017959/1-392 ---------- -----MLMSP SEGA------ ---------- ---------- bmy_19739T0/1-598 KRALNVK--- --ERFFILFD SDGSGTITLQ ELQEAWTLLI HRSPTDKLQF ENSTTRP00000002519/1-380 ---------- ---------- ---------- ---------- ---------- ENSP00000373518/1-765 KAALHVKESF FAERFFALFD SDRSGTITLQ ELQEALTLLI HGSPMDKLKF ENSBTAP00000011888/1-755 KKALKVKESF FAERFFVLFD SDGSGTITLQ ELQKALTLLI HGSPMDKLKF 101 150 BACU017959/1-392 ---VHSAQ-- ---------- ---------- ---------- ---------- bmy_19739T0/1-598 LFQVHDVD-- ---------- ---------- ---------- -----GSGSI ENSTTRP00000002519/1-380 ---------- ---------- ---------- ---------- ---------- ENSP00000373518/1-765 LFQVYDID-- -------VCA RQGASAGTEW GAGAGPHWAS SPLGTGSGSI ENSBTAP00000011888/1-755 LFQVYDVDGK HPLWDGRRTQ REGQRERPV- -SVTAQHWAS SSPETGSGSI 151 200 BACU017959/1-392 ---------- ---------- ---------- ---------- ------NTPR bmy_19739T0/1-598 NVDELRIVLQ SCPRESAISL PEEKLDQLTL ALFKLADKDC SGAITFDELR ENSTTRP00000002519/1-380 ---------- ---------- ---------- ---------- ---------- ENSP00000373518/1-765 DPDELRTVLQ SCLRESAISL PDEKLDQLTL ALFESADADG NGAITFEELR ENSBTAP00000011888/1-755 DADELRTVLQ SCLYESAISL PKEKLDQLTL ALFESADKDC SGTITFEELR 201 250 BACU017959/1-392 QMFQMFATST KNLPLQTFWA KPPEQRGNEA SHPQPPTQAC SQERVCVAKA bmy_19739T0/1-598 DELQRFPGVM ENLTISAAHW LTPSAAGPPR HRPRQLTSAY WHNHHSHLPC ENSTTRP00000002519/1-380 ---------- ---------- ---------- ---------- ---------- ENSP00000373518/1-765 DELQRFPGVM ENLTISAAHW LTAPAPRPRP RRPRQLTRAY WHNHRSQLFC ENSBTAP00000011888/1-755 DELQRFPGVL ENLTISAAHW LTPPAPQRHR RQPRLLTSAY WHNHRSHVLC 251 300 BACU017959/1-392 LGTVLALRMA V-NLGSVPPP GLDSGNLLPT PTG------- ---------- bmy_19739T0/1-598 LAAYVDLHVL LFALAASVHR ALGASVMVAK GCGQCINFDC SFIAVLMLRR ENSTTRP00000002519/1-380 ---------- ---------- ---------- ---------- ---------- ENSP00000373518/1-765 LATYAGLHVL LFGLAASAHR DLGASVMVAK GCGQCLNFDC SFIAVLMLRR ENSBTAP00000011888/1-755 LAVFVGLHML LFALAASAYR AFGSSVMVAK GCGQCLNFDC SFIAVLMLRR 301 350 BACU017959/1-392 ---------- ---------- ---------- ---------- ------VLLD bmy_19739T0/1-598 CLTWLWATWL AQVLPLHHNL QFHQLMGYVV VGLSLVHTVA HVVNFGVLLD ENSTTRP00000002519/1-380 ---------- ---------- ---------- ---------- ---------- ENSP00000373518/1-765 CLTWLRATWL AQVLPLDQNI QFHQLMGYVV VGLSLVHTVA HTVNFVLQAQ ENSBTAP00000011888/1-755 CLTWLRATWL AQVLPLDHNI QFHQLMGYVV VGLSLVHTVA HVVNFALQAQ 351 400 BACU017959/1-392 P--------- ---------- ---------- ----PVLPPM SA-------- bmy_19739T0/1-598 P--------- ---------- ---------- ----PVLPPM SA-------- ENSTTRP00000002519/1-380 ---------- ---------- ---------- ----LLLLLM SACSSSCVRR ENSP00000373518/1-765 AEASPFQFWE LLLTTRPGIG WVHGSASPTG VALLLLLLLM FICSSSCIRR ENSBTAP00000011888/1-755 SETSPFRFWE LLLTTRPGIG WVHGSASPTG VALLLLLLLM FACSSSCVRR 401 450 BACU017959/1-392 --------WA QL-------L EVAAGP--WH -LVLPGE--- -----GRRPG bmy_19739T0/1-598 --------RX QL-------L EVAAGP--WH -LVLPGE--- ---------G ENSTTRP00000002519/1-380 SGHFEVFYWT HLSY------ LMLHGPNFWK -LLVPGILFF LEKAVGLAAS ENSP00000373518/1-765 SGHFEVFYWT HLSYLLVWLL LIFHGPNFWK WLLVPGILFF LEKAIGLAVS ENSBTAP00000011888/1-755 SGHFEVFYWT HLSYLPMWLL LILHGPNFWK WLLVPGTLFF LEKTISLAAS 451 500 BACU017959/1-392 R--------- --IPRGGPVH RGSQPPPFQ- GPGDYLYLNI PTIAHHEWHP bmy_19739T0/1-598 R--------- ---------- ---------- RPG-----RI P----HGGPV ENSTTRP00000002519/1-380 LMEALCIVEV -LLPSKVTHL VIKKPPPFHY RPGNYL-LNI PTVAHHKWHP ENSP00000373518/1-765 RMAAVCIMEV NLLPSKVTHL LIKRPPFFHY RPGDYLYLNI PTIARYEWHP ENSBTAP00000011888/1-755 RMAALHIVEV NLLPSKVTHL LIKRPPLFHY RPGDYLYLNI PSIARYEWHP 501 550 BACU017959/1-392 FTISSAPEQK DTIWLHIRSQ GQWTNRLYES FKKSDPVGCG SERLSRSLKM bmy_19739T0/1-598 HRGSQSPPFQ DTIWLHIRSQ GQWTNRLYES FKKSDPVGCG SERLSRSLKM ENSTTRP00000002519/1-380 FTISSAPEQK XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000373518/1-765 FTISSAPEQK DTIWLHIRSQ GQWTNRLYES FKASDPLGRG SKRLSRSVTM ENSBTAP00000011888/1-755 FTISSAPEQK DTIWLHIRSQ GQWTNRLFES FKKPEPVFCG SKRLSRRLEM 551 600 BACU017959/1-392 RRSQRKPQ-- ---------- ---------- ---------- ---------- bmy_19739T0/1-598 RRSQRKLQVK GRKPPGLAQP CLAPVEFKVQ GTKPCGILPG QTRGTFLNSA ENSTTRP00000002519/1-380 XXXXXXXX-- ---------- ---------- ---------- ---------- ENSP00000373518/1-765 RKSQRSSK-- ---------- ---------- ---------- ---------- ENSBTAP00000011888/1-755 KRSQRKPQ-- ---------- ---------- ---------- ---------- 601 650 BACU017959/1-392 ---------G LQPQPIYFGA SAQGTVASNK DVSVELMSYR PKGTPQQGDE bmy_19739T0/1-598 KSKALGNGEG LQPQPIHSGA SAQGAVASNK DVSVELMSYR PKGTPXQEDE ENSTTRP00000002519/1-380 ---------- ---------- ---------- ---------- ---------- ENSP00000373518/1-765 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011888/1-755 ---------- ---------- ---------- ---------- ---------- 651 700 BACU017959/1-392 GLVYVGTKDG LQAQWEAAAE DLGLVSKVSS ENHRFCNIKC YIDGPYGTPN bmy_19739T0/1-598 GLVYVGTKDG VQAREVLKXQ GPLLPHPPTL SFNPSC-MQC YIDGPYGTPN ENSTTRP00000002519/1-380 ---------- ---------- ----VSEVSS ENHQFCNIKC YIDGPYRTPN ENSP00000373518/1-765 ---------- ---------- ----GSEILL EKHKFCNIKC YIDGPYGTPT ENSBTAP00000011888/1-755 ---------- ---------- ----VSEMSS ENHQFCNIKC YIDGPYGTPT 701 750 BACU017959/1-392 RRIFASEHAV LIGAGVGITP FASILQSILY RHQKRTHICP NCQHSGREGV bmy_19739T0/1-598 RRXFASEHAV LIGAGVXITP FASILQSILY RHQKRTHICP NCQHWGREGV ENSTTRP00000002519/1-380 RRIFASEHAV LIGAGVGITP FASILQSILY RHQKRTHICP HCQHSGREGV ENSP00000373518/1-765 RRIFASEHAV LIGAGIGITP FASILQSIMY RHQKRKHTCP SCQHSWIEGV ENSBTAP00000011888/1-755 RRIFASEHAV LIGAGIGITP FASILQSILY RHQKRKHICP NCQHSWMESG 751 800 BACU017959/1-392 PDADRKLLKV DFSWINRG-- ---------- ---------- ---------- bmy_19739T0/1-598 QDADMKLHKV DFIWINRG-- ---------- ---------- ---------- ENSTTRP00000002519/1-380 QDADVKLHKV DSIWINRD-R SFEWFVS-LT RMEMDQAEET QEGRFLELRM ENSP00000373518/1-765 QD-NMKLHKV DFIWINRDQR SFEWFVSLLT KLEMDQAEEA QYGRFLELHM ENSBTAP00000011888/1-755 QDEDMKLHKV DFIWINRDQQ SFEWFVSLLT KLEMDQAEET QVGRFLELHM 801 850 BACU017959/1-392 ---------- ---------- ---------- ---------- ---------- bmy_19739T0/1-598 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002519/1-380 YMTSALGKND MKAIGLQMAL DLQAKKEKKD SITGLQTRSQ PGRPDWNEVF ENSP00000373518/1-765 YMTSALGKND MKAIGLQMAL DLLANKEKKD SITGLQTRTQ PGRPDWSKVF ENSBTAP00000011888/1-755 YMTSALSKND IKAIGLQMAL DLLAKKEKKD SITGLQTRTQ PGRPDWNKVF 851 900 BACU017959/1-392 ---------- ---------- ---------- ---------- - bmy_19739T0/1-598 ---------- ---------- ---------- ---------- - ENSTTRP00000002519/1-380 QKLATEKKGK VQVFFCGFPA LAKVLKDHCK QFGFKFFQGN F ENSP00000373518/1-765 QKVAAEKKGK VQVFFCGSPA LAKVLKGHCE KFGFRFFQEN F ENSBTAP00000011888/1-755 QKVAAEKKGK VQVFFCGSPA LAKILKGHCE QFSFKFFQEN F