KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:45:05 2014 Check: 00 ..
Name: BACU017959/1-392 Len: 891 Check: 5135 Weight: 1.00
Name: bmy_19739T0/1-598 Len: 891 Check: 7942 Weight: 1.00
Name: ENSTTRP00000002519/1-380 Len: 891 Check: 3540 Weight: 1.00
Name: ENSP00000373518/1-765 Len: 891 Check: 5725 Weight: 1.00
Name: ENSBTAP00000011888/1-755 Len: 891 Check: 8995 Weight: 1.00
//
1 50
BACU017959/1-392 ---------- ---------- ---------- ---------- ----------
bmy_19739T0/1-598 ---------- --------MS AEEDAKWLQW VTHQFETIAG EDREINLQEL
ENSTTRP00000002519/1-380 ---------- ---------- ---------- ---------- ----------
ENSP00000373518/1-765 MNTSGDPAQT GPEGCRGTMS AEEDARWLRW VTQQFKTIAG EDGEISLQEF
ENSBTAP00000011888/1-755 ---------- --------MN AEEDAKWLQW VTHQFKTIAG EDGEINLQDF
51 100
BACU017959/1-392 ---------- -----MLMSP SEGA------ ---------- ----------
bmy_19739T0/1-598 KRALNVK--- --ERFFILFD SDGSGTITLQ ELQEAWTLLI HRSPTDKLQF
ENSTTRP00000002519/1-380 ---------- ---------- ---------- ---------- ----------
ENSP00000373518/1-765 KAALHVKESF FAERFFALFD SDRSGTITLQ ELQEALTLLI HGSPMDKLKF
ENSBTAP00000011888/1-755 KKALKVKESF FAERFFVLFD SDGSGTITLQ ELQKALTLLI HGSPMDKLKF
101 150
BACU017959/1-392 ---VHSAQ-- ---------- ---------- ---------- ----------
bmy_19739T0/1-598 LFQVHDVD-- ---------- ---------- ---------- -----GSGSI
ENSTTRP00000002519/1-380 ---------- ---------- ---------- ---------- ----------
ENSP00000373518/1-765 LFQVYDID-- -------VCA RQGASAGTEW GAGAGPHWAS SPLGTGSGSI
ENSBTAP00000011888/1-755 LFQVYDVDGK HPLWDGRRTQ REGQRERPV- -SVTAQHWAS SSPETGSGSI
151 200
BACU017959/1-392 ---------- ---------- ---------- ---------- ------NTPR
bmy_19739T0/1-598 NVDELRIVLQ SCPRESAISL PEEKLDQLTL ALFKLADKDC SGAITFDELR
ENSTTRP00000002519/1-380 ---------- ---------- ---------- ---------- ----------
ENSP00000373518/1-765 DPDELRTVLQ SCLRESAISL PDEKLDQLTL ALFESADADG NGAITFEELR
ENSBTAP00000011888/1-755 DADELRTVLQ SCLYESAISL PKEKLDQLTL ALFESADKDC SGTITFEELR
201 250
BACU017959/1-392 QMFQMFATST KNLPLQTFWA KPPEQRGNEA SHPQPPTQAC SQERVCVAKA
bmy_19739T0/1-598 DELQRFPGVM ENLTISAAHW LTPSAAGPPR HRPRQLTSAY WHNHHSHLPC
ENSTTRP00000002519/1-380 ---------- ---------- ---------- ---------- ----------
ENSP00000373518/1-765 DELQRFPGVM ENLTISAAHW LTAPAPRPRP RRPRQLTRAY WHNHRSQLFC
ENSBTAP00000011888/1-755 DELQRFPGVL ENLTISAAHW LTPPAPQRHR RQPRLLTSAY WHNHRSHVLC
251 300
BACU017959/1-392 LGTVLALRMA V-NLGSVPPP GLDSGNLLPT PTG------- ----------
bmy_19739T0/1-598 LAAYVDLHVL LFALAASVHR ALGASVMVAK GCGQCINFDC SFIAVLMLRR
ENSTTRP00000002519/1-380 ---------- ---------- ---------- ---------- ----------
ENSP00000373518/1-765 LATYAGLHVL LFGLAASAHR DLGASVMVAK GCGQCLNFDC SFIAVLMLRR
ENSBTAP00000011888/1-755 LAVFVGLHML LFALAASAYR AFGSSVMVAK GCGQCLNFDC SFIAVLMLRR
301 350
BACU017959/1-392 ---------- ---------- ---------- ---------- ------VLLD
bmy_19739T0/1-598 CLTWLWATWL AQVLPLHHNL QFHQLMGYVV VGLSLVHTVA HVVNFGVLLD
ENSTTRP00000002519/1-380 ---------- ---------- ---------- ---------- ----------
ENSP00000373518/1-765 CLTWLRATWL AQVLPLDQNI QFHQLMGYVV VGLSLVHTVA HTVNFVLQAQ
ENSBTAP00000011888/1-755 CLTWLRATWL AQVLPLDHNI QFHQLMGYVV VGLSLVHTVA HVVNFALQAQ
351 400
BACU017959/1-392 P--------- ---------- ---------- ----PVLPPM SA--------
bmy_19739T0/1-598 P--------- ---------- ---------- ----PVLPPM SA--------
ENSTTRP00000002519/1-380 ---------- ---------- ---------- ----LLLLLM SACSSSCVRR
ENSP00000373518/1-765 AEASPFQFWE LLLTTRPGIG WVHGSASPTG VALLLLLLLM FICSSSCIRR
ENSBTAP00000011888/1-755 SETSPFRFWE LLLTTRPGIG WVHGSASPTG VALLLLLLLM FACSSSCVRR
401 450
BACU017959/1-392 --------WA QL-------L EVAAGP--WH -LVLPGE--- -----GRRPG
bmy_19739T0/1-598 --------RX QL-------L EVAAGP--WH -LVLPGE--- ---------G
ENSTTRP00000002519/1-380 SGHFEVFYWT HLSY------ LMLHGPNFWK -LLVPGILFF LEKAVGLAAS
ENSP00000373518/1-765 SGHFEVFYWT HLSYLLVWLL LIFHGPNFWK WLLVPGILFF LEKAIGLAVS
ENSBTAP00000011888/1-755 SGHFEVFYWT HLSYLPMWLL LILHGPNFWK WLLVPGTLFF LEKTISLAAS
451 500
BACU017959/1-392 R--------- --IPRGGPVH RGSQPPPFQ- GPGDYLYLNI PTIAHHEWHP
bmy_19739T0/1-598 R--------- ---------- ---------- RPG-----RI P----HGGPV
ENSTTRP00000002519/1-380 LMEALCIVEV -LLPSKVTHL VIKKPPPFHY RPGNYL-LNI PTVAHHKWHP
ENSP00000373518/1-765 RMAAVCIMEV NLLPSKVTHL LIKRPPFFHY RPGDYLYLNI PTIARYEWHP
ENSBTAP00000011888/1-755 RMAALHIVEV NLLPSKVTHL LIKRPPLFHY RPGDYLYLNI PSIARYEWHP
501 550
BACU017959/1-392 FTISSAPEQK DTIWLHIRSQ GQWTNRLYES FKKSDPVGCG SERLSRSLKM
bmy_19739T0/1-598 HRGSQSPPFQ DTIWLHIRSQ GQWTNRLYES FKKSDPVGCG SERLSRSLKM
ENSTTRP00000002519/1-380 FTISSAPEQK XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
ENSP00000373518/1-765 FTISSAPEQK DTIWLHIRSQ GQWTNRLYES FKASDPLGRG SKRLSRSVTM
ENSBTAP00000011888/1-755 FTISSAPEQK DTIWLHIRSQ GQWTNRLFES FKKPEPVFCG SKRLSRRLEM
551 600
BACU017959/1-392 RRSQRKPQ-- ---------- ---------- ---------- ----------
bmy_19739T0/1-598 RRSQRKLQVK GRKPPGLAQP CLAPVEFKVQ GTKPCGILPG QTRGTFLNSA
ENSTTRP00000002519/1-380 XXXXXXXX-- ---------- ---------- ---------- ----------
ENSP00000373518/1-765 RKSQRSSK-- ---------- ---------- ---------- ----------
ENSBTAP00000011888/1-755 KRSQRKPQ-- ---------- ---------- ---------- ----------
601 650
BACU017959/1-392 ---------G LQPQPIYFGA SAQGTVASNK DVSVELMSYR PKGTPQQGDE
bmy_19739T0/1-598 KSKALGNGEG LQPQPIHSGA SAQGAVASNK DVSVELMSYR PKGTPXQEDE
ENSTTRP00000002519/1-380 ---------- ---------- ---------- ---------- ----------
ENSP00000373518/1-765 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000011888/1-755 ---------- ---------- ---------- ---------- ----------
651 700
BACU017959/1-392 GLVYVGTKDG LQAQWEAAAE DLGLVSKVSS ENHRFCNIKC YIDGPYGTPN
bmy_19739T0/1-598 GLVYVGTKDG VQAREVLKXQ GPLLPHPPTL SFNPSC-MQC YIDGPYGTPN
ENSTTRP00000002519/1-380 ---------- ---------- ----VSEVSS ENHQFCNIKC YIDGPYRTPN
ENSP00000373518/1-765 ---------- ---------- ----GSEILL EKHKFCNIKC YIDGPYGTPT
ENSBTAP00000011888/1-755 ---------- ---------- ----VSEMSS ENHQFCNIKC YIDGPYGTPT
701 750
BACU017959/1-392 RRIFASEHAV LIGAGVGITP FASILQSILY RHQKRTHICP NCQHSGREGV
bmy_19739T0/1-598 RRXFASEHAV LIGAGVXITP FASILQSILY RHQKRTHICP NCQHWGREGV
ENSTTRP00000002519/1-380 RRIFASEHAV LIGAGVGITP FASILQSILY RHQKRTHICP HCQHSGREGV
ENSP00000373518/1-765 RRIFASEHAV LIGAGIGITP FASILQSIMY RHQKRKHTCP SCQHSWIEGV
ENSBTAP00000011888/1-755 RRIFASEHAV LIGAGIGITP FASILQSILY RHQKRKHICP NCQHSWMESG
751 800
BACU017959/1-392 PDADRKLLKV DFSWINRG-- ---------- ---------- ----------
bmy_19739T0/1-598 QDADMKLHKV DFIWINRG-- ---------- ---------- ----------
ENSTTRP00000002519/1-380 QDADVKLHKV DSIWINRD-R SFEWFVS-LT RMEMDQAEET QEGRFLELRM
ENSP00000373518/1-765 QD-NMKLHKV DFIWINRDQR SFEWFVSLLT KLEMDQAEEA QYGRFLELHM
ENSBTAP00000011888/1-755 QDEDMKLHKV DFIWINRDQQ SFEWFVSLLT KLEMDQAEET QVGRFLELHM
801 850
BACU017959/1-392 ---------- ---------- ---------- ---------- ----------
bmy_19739T0/1-598 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000002519/1-380 YMTSALGKND MKAIGLQMAL DLQAKKEKKD SITGLQTRSQ PGRPDWNEVF
ENSP00000373518/1-765 YMTSALGKND MKAIGLQMAL DLLANKEKKD SITGLQTRTQ PGRPDWSKVF
ENSBTAP00000011888/1-755 YMTSALSKND IKAIGLQMAL DLLAKKEKKD SITGLQTRTQ PGRPDWNKVF
851 900
BACU017959/1-392 ---------- ---------- ---------- ---------- -
bmy_19739T0/1-598 ---------- ---------- ---------- ---------- -
ENSTTRP00000002519/1-380 QKLATEKKGK VQVFFCGFPA LAKVLKDHCK QFGFKFFQGN F
ENSP00000373518/1-765 QKVAAEKKGK VQVFFCGSPA LAKVLKGHCE KFGFRFFQEN F
ENSBTAP00000011888/1-755 QKVAAEKKGK VQVFFCGSPA LAKILKGHCE QFSFKFFQEN F