KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:13 2014 Check: 00 .. Name: ENSP00000347416/1-1215 Len: 1245 Check: 3117 Weight: 1.00 Name: ENSBTAP00000011906/1-1207 Len: 1245 Check: 1179 Weight: 1.00 Name: ENSTTRP00000010946/1-1171 Len: 1245 Check: 5275 Weight: 1.00 Name: bmy_22602T0/1-617 Len: 1245 Check: 9681 Weight: 1.00 Name: BACU006492/1-1234 Len: 1245 Check: 8615 Weight: 1.00 // 1 50 ENSP00000347416/1-1215 MALKMVKGSI D--------- ---RMFD-KN LQDLVR---- ---------- ENSBTAP00000011906/1-1207 MALKMVKGSI D--------- ---RMFD-KN LQDLVR---- ---------- ENSTTRP00000010946/1-1171 MALKMVKGSI D--------- ---RMFD-KN LQDLVR---- ---------- bmy_22602T0/1-617 ---------- ---------- ---------- ---------- ---------- BACU006492/1-1234 MEVQACTYTV GCWRRSPFPG WRVRLPDGEQ LLDIVQVPLP DSTPPALTVA 51 100 ENSP00000347416/1-1215 -GIRNHKEDE AKYISQCIDE IKQELKQDNI AVKANAVCKL TYLQMLGYDI ENSBTAP00000011906/1-1207 -GIRNHKEDE AKYISQCIDE IKQELKQDNI AVKANAVCKL TYLQMLGYDI ENSTTRP00000010946/1-1171 -GIRNHKEDE AKYISQCIDE IKQELKQDNI AVKANAVCKL TYLQMLGYDI bmy_22602T0/1-617 ---------- ---------- ---------- ---------- ----MLGYDI BACU006492/1-1234 LGKPSSTRRK AKYISQCIDE IKQELKQDNI AVKANAVCKL TYLQMLGYDI 101 150 ENSP00000347416/1-1215 SWAAFNIIEV MSASKFTFKR IGYLAASQSF HEGTDVIMLT TNQIRKDLSS ENSBTAP00000011906/1-1207 SWAAFNIIEV MSASKFTFKR IGYLAASQCF HEGTDVIMLT TNQIRKDLSS ENSTTRP00000010946/1-1171 SWAAFNIIEV MSASKFTFKR IGYLAASQCF HEGTDVIMLT TNQIRKDLSS bmy_22602T0/1-617 SWAAFNIIEV MSASKFTFKR IGYLAASQCF HEGTDVIMLT TNQIRKDLSS BACU006492/1-1234 SWAAFNIIEV MSASKFTFKR IGYLAASQCF HEGTDVIMLT TNQIRKDLSS 151 200 ENSP00000347416/1-1215 PSQYDTGVAL TGLSCFVTPD LARDLANDIM TLMSHTKPYI RKKAVLIMYK ENSBTAP00000011906/1-1207 PSQYDTGVAL TGLSCFVTPD LARDLANDIM TLMSHTKPYI RKKAVLIMYK ENSTTRP00000010946/1-1171 PSQYDTGVAL TGLSCFVTPD LARDLANDIM TLMSHTKPYI RKKAVLIMYK bmy_22602T0/1-617 PSQYDTGVAL TGLSCFVTPD LARDLANDIM TLMSHTKPYI RKKAVLIMYK BACU006492/1-1234 PSQYDTGVAL TGLSCFVTPD LARDLANDIM TLMSHTKPYI RKKAVLIMYK 201 250 ENSP00000347416/1-1215 VFLKYPESLR PAFPRLKEKL EDPDPGVQSA AVNVICELAR RNPKNYLSLA ENSBTAP00000011906/1-1207 VFLKYPESLR PAFPRLKEKL EDPDPGVQSA AVNVICELAR RNPKNYLSLA ENSTTRP00000010946/1-1171 VFLKYPESLR PAFPRLKEKL EDPDPGVQSA AVNVICELAR RNPKNYLSLA bmy_22602T0/1-617 VFLKYPESLR PAFPRLKEKL EDPDPGVQSA AVNVICELAR RNPKNYLSLA BACU006492/1-1234 VFLKYPESLR PAFPRLKEKL EDPDPGVQSA AVNVICELAR RNPKNYLSLA 251 300 ENSP00000347416/1-1215 PLFFKLMTSS TNNWVLIKII KLFGALTPLE PRLGKKLIEP LTNLIHSTSA ENSBTAP00000011906/1-1207 PLFFKLMTSS TNNWVLIKII KLFGALTPLE PRLGKKLIEP LTNLIHSTSA ENSTTRP00000010946/1-1171 PLFFKLMTSS TNNWVLIKII KLFGALTPLE PRLGKKLIEP LTNLIH---- bmy_22602T0/1-617 PLFFKLMTSS TNNW------ --FGALTPLE PRLGKKLIEP LTNLIHSTSA BACU006492/1-1234 PLFFKLMTSS TNNWVLIKII KLFGALTPLE PRLGKKLIEP LTNLIHSTSA 301 350 ENSP00000347416/1-1215 MSLLYECVNT VIAVLISLSS GMPNHSASIQ LCVQKLRILI EDSDQNLKYL ENSBTAP00000011906/1-1207 MSLLYECVNT VIAVLISLSS GMPNHSASIQ LCVQKLRILI EDSDQNLKYL ENSTTRP00000010946/1-1171 ---------- ----LISLSS GMPNHSASIQ LCVQKLRILI EDSDQNLKYL bmy_22602T0/1-617 MSLLYECVNT VIAV------ ---------- ---------- -------KYL BACU006492/1-1234 MSLLYECVNT VIAVLISLSS GMPNHSASIQ LCVQKLRILI EDSDQNLKYL 351 400 ENSP00000347416/1-1215 GLLAMSKILK THPKSVQSHK DLILQCLDDK DESIRLRALD LLYGMVSKKN ENSBTAP00000011906/1-1207 GLLAMSKILR THPKSVQAHK DLVLQCLDDK DESIRLRALD LLYGMVSKKN ENSTTRP00000010946/1-1171 GLLAMSKILR THPKSVQAHK DLVLQCLDDK DESIR----- -----VSKKN bmy_22602T0/1-617 GLLAMSKILR THPKSVQAHK DLVLQCLDDK DESIRLRALD LLYGMVSKKN BACU006492/1-1234 GLLAMSKILR THPKSVQAHK DLVLQCLDDK DEAIRLRALD LLYGMVSKKN 401 450 ENSP00000347416/1-1215 LMEIVKKLMT HVDKAEGTTY RDELLTKIID ICSQSNYQYI TNFEWYISIL ENSBTAP00000011906/1-1207 LMEIVKKLMT HVDKAEGTTY RDELLTKIID ICSQSNYQHI TNFEWYISIL ENSTTRP00000010946/1-1171 LMEIVKKLMT HVDKAEGTTY RDELLTKIID ICSQSNYQHI TNFEWYISIL bmy_22602T0/1-617 LMEIVKKLMT HVDKAEGTTY RDELLTKIID ICSQSNYQHI TNFE-YISIL BACU006492/1-1234 LMEIVKKLMT HVDKAEGTTY RDELLTKIID ICSQSNYQHI TNFEWYISIL 451 500 ENSP00000347416/1-1215 VELTRLEGTR HGHLIAAQML DVAIRVKAIR KFAVSQMSAL LDSAHLLASS ENSBTAP00000011906/1-1207 VELTRLEGTR HGHLIAAQML DVAIRVKAIR RFAVAQMSAL LDSAHLVASS ENSTTRP00000010946/1-1171 VELTRLEGTR HGHLIAAQML DVAIRVKAIR RFAVSQMSAL LDSAHLVASS bmy_22602T0/1-617 VELTRLEGTR HGHLIAAQML DVAIRVKAIR RFAVSQMSAL LDSAHLVASS BACU006492/1-1234 VELTRLEGTR HGHLIAAQML DVAIRVKAIR RFAVSQMSAL LDSAHLVASS 501 550 ENSP00000347416/1-1215 TQRNGICEVL YAAAWICGEF SEHLQEPHHT LEAMLRPRVT TLPGHIQAVY ENSBTAP00000011906/1-1207 PQRSGICEVL YAAAWICGEF SEHLQEPQQT LEAMLRPKVT TLPGHIQAVY ENSTTRP00000010946/1-1171 TQRSGICEVL YAAAWICGEF SEHLQEPQQT LEAMLRPKVT TLPGHIQAVY bmy_22602T0/1-617 TQRSGICEVL YAAAWICGEF SEHLQEPQQT LEAMLRPKVT TLPGHIQAVY BACU006492/1-1234 TQRSGICEVL YAAAWICGEF SEHLQEPQQT LEAMLRPKVT TLPGHIQAVY 551 600 ENSP00000347416/1-1215 VQNVVKLYAS ILQQKEQAGE AEGAQAVTQL MVDRLPQFVQ SADLEVQERA ENSBTAP00000011906/1-1207 VQNVVKLYAA ILQQKEQAAD TSAAQEVTQL LVERLPQFVQ SADLEVQERA ENSTTRP00000010946/1-1171 VQNVVKLYAA ILQQKEQAAD AQAAQEVTQL LVERLPQFVQ SADLEAQERA bmy_22602T0/1-617 VQNVVKLYAA ILQQQERAAD TQAAQEVTQL LVERLPQFVQ SADLEAQERA BACU006492/1-1234 VQNVVKLYAA ILQQKERAAD TQAAQEVTQL LVEQLPQFVQ SADLEAQERA 601 650 ENSP00000347416/1-1215 SCILQLVKHI QKLQAKDVPV AEEVSALFAG ELNPVAPKAQ KKVPVPEGLD ENSBTAP00000011906/1-1207 SCILQLVKHV QKLQAKDVPV AEEVSALFAG ELNPVAPKAQ KKVPVPEGLD ENSTTRP00000010946/1-1171 SCILQLVKHV QKLQARDVPV AEEVSALFAG ELNPVAPKAQ KKVPVPEGLD bmy_22602T0/1-617 SCILQLVKHV QKLQARDVPV AEEVSALFAG ELNPVAPKAQ KKVPVPEGLD BACU006492/1-1234 SCILQLVKHV QKLQARGVPV AEEVSALFAG ELNPVAPKAQ KKVPVPEGLD 651 700 ENSP00000347416/1-1215 LDAWINEPLS DSESEDERPR AVFHEEEQRR PKHRPSEADE EELARRREAR ENSBTAP00000011906/1-1207 LDAWINEPLS DSESEDEKPK AMFQDEEQRH TKPRAPEADE QELARRREAR ENSTTRP00000010946/1-1171 LDAWINEPLS DSESEDEKPK AIFHDEEPRH AKQRPPEADE QELARRREAR bmy_22602T0/1-617 LDAWINEPLS DSESEDEKPK AIFHDEEPRH AKQRPPEADE QELARRREAR BACU006492/1-1234 LDAWINEPLS DSESEDEKPK AIFHDEEPRH AKQRPAEADE QELARRREAR 701 750 ENSP00000347416/1-1215 KQEQANNPFY IKSSPSPQKR YQDTPGVEHI PVVQIDLSVP LKVPGLPMSD ENSBTAP00000011906/1-1207 RQEQANNPFY IKSSPSPQKR YQDAPGVEHI PVVQIDLSVP LKVPGMPLSD ENSTTRP00000010946/1-1171 KQEQA-NPFY IR-SPSPQKR YQDAPGVDHI PVVQIDLSVP LKVPGMPMSD bmy_22602T0/1-617 KQEQANNPFY IKSSPSPQKV RPACSSLRHA PTG------- ---------- BACU006492/1-1234 KQEQANNPFY IKSSPSPQKR YQDAPGVDHI PVVQIDLSVP LKVPGMPMSD 751 800 ENSP00000347416/1-1215 QYVKLEEERR HRQKLEKDKR RKKRKEKEKK GKRRHSSLPT ESDEDIAPAQ ENSBTAP00000011906/1-1207 QYVKLEEERR HRQRLEKDKR KKKKRERERR GTRRHSSLHT ESDEDIAPAQ ENSTTRP00000010946/1-1171 QYVKLEEERR HRQRLEKDKR KRKKRERERR GARRHTSLHT ESDEDITPAQ bmy_22602T0/1-617 ---------- ---------- ---------- ---------- ---------- BACU006492/1-1234 QYVKLEEERR HRQRLEKDKR KRKKRERERR GARRHSSLHT ESDEDITPAQ 801 850 ENSP00000347416/1-1215 QVDIVTEEMP ENALPSDEDD KDPNDPYRAL DIDLDKPLAD SEKLPIQKHR ENSBTAP00000011906/1-1207 RVDIVTEEMP ENALPSDEDD KDPNDPYRAL DIDLDKPLAD SEKLPVQKHR ENSTTRP00000010946/1-1171 RVDIVTEEMP ENALPSDEDD KDPNDPYRAL DIDLDKPLAD SEKLPVQKHR bmy_22602T0/1-617 ---------- ---------- -----PVRSL ---------- ---------- BACU006492/1-1234 RVDIVTEEMP ENALPSDEDD KDPNDPYRAL DIDLDKPLAD SEKLPVQKHR 851 900 ENSP00000347416/1-1215 NTETSKSPEK -DVPMVEKKS KKPKKKEKKH KEKERDKEKK KEKEKKAEDL ENSBTAP00000011906/1-1207 NAETSKSPEK EDVPLVEKKS KKPKKKEKKH KEKEREKKKK EVEK--GEDL ENSTTRP00000010946/1-1171 DTETSKSPER QDVTVVEKKS KKPKKKEKKQ KEKEREKKKK KEAEKVGVDL bmy_22602T0/1-617 ---------- ---------- ---------- ---------- ---------- BACU006492/1-1234 DAETSKSPER QDIAVVEKKS KKPKRKEKKH KEKEREKKKK EAEK--GVDL 901 950 ENSP00000347416/1-1215 DFWLSTTPPP APAPAPAPVP STGELSVN-T VTTPKDECED AKTEAQGEED ENSBTAP00000011906/1-1207 DFWLSTTP-- -----PAATP ALEELEVNTT VTVLKEGQEE PRGEEQDAEE ENSTTRP00000010946/1-1171 DFWLSTTP-- -----PAATP APEEPGVNAA VTAPK---EE PRGEEQDAGE bmy_22602T0/1-617 ---------- ---------- ---------- ---------- ---------- BACU006492/1-1234 DFWLSTTP-- -----PAATP APEEPGVNAA VASPKEEQEE PRGEEQDAAE 951 1000 ENSP00000347416/1-1215 DAEGQDQDKK SPKPKKKKHR KEKEERTKGK KKSKKQPPGS EEAAGEPVQN ENSBTAP00000011906/1-1207 DRE-QDLEKK PSKHKKKKHK KDKEERPKDK RKSKKKVPPA DEEAAEPVEN ENSTTRP00000010946/1-1171 DAE-HDLEKK S---EQKKHK KDKGERSKDK KRP-RRGPPR EGDA-EPVQN bmy_22602T0/1-617 ---------- ---------- ---------- ---------- ---------- BACU006492/1-1234 DGE-QDLEKK PSKHKKKKHK KDKEERSKDQ KKSKKRAPPR EGEA-EPVEN 1001 1050 ENSP00000347416/1-1215 GAPEEEQLPP ESSYSLLAEN SYVKMTCDIR GSLQEDSQVT VAIVLENRSS ENSBTAP00000011906/1-1207 GTLEEEPLPP MSSYILLAEN SYIKMTYDVQ GSLQKDSQVT VSVVLENQSD ENSTTRP00000010946/1-1171 GALREEPLPP MSSYSLLAEN SYIKMTYDVQ GSLQKDSQVT VSMVLENQSS bmy_22602T0/1-617 ---------- ---------- ---------- ---------- ---------- BACU006492/1-1234 GALDEEPLPP MSSYSLLAEN SYIKMTYDVQ GSLQKDSQVT VSVVLENQSS 1051 1100 ENSP00000347416/1-1215 SILKGMELSV LDSLNARMAR PQGSSVHDGV PVPFQLPPGV SNEAQYVFTI ENSBTAP00000011906/1-1207 SFLKSMELNV LDSLNARLAR PEGSSVHDGV PVPFQLPPGI SNEAQFVFTI ENSTTRP00000010946/1-1171 SFLKNMELNV LDSLNARLAR PEGSSVHDGV PVPFQLPPGI SNEAQFVFTI bmy_22602T0/1-617 ---------- ---------- ---STAHAGL SAGPQAGP-- ---------- BACU006492/1-1234 SFLKNMELNV LDSLNARLAR PEGSSVHDGV PVPFQLPPGI SNEAQFVFTI 1101 1150 ENSP00000347416/1-1215 QSIVMAQKLK GTLSFIAKND EGATHEKLDF RLHFSCSSYL ITTPCYSDAF ENSBTAP00000011906/1-1207 QSIVMAQKLK GTLSFIAKND EGSTHEKLDF KLHFTCTSYL VTTPCYSDAF ENSTTRP00000010946/1-1171 QSIVTAQKLK GTLSFIAKND EGSTHEKLDF KLHFTCTSYL VTTPCYSDAF bmy_22602T0/1-617 ---------- ---------- ---------- ---------- ---------- BACU006492/1-1234 QSIVTAQKLK GTLSFIAKND EGSTHEKLDF KLHFTCTSYL VTTPCYSDAF 1151 1200 ENSP00000347416/1-1215 AKLLESGDLS MSSIKVDGIR MSFQNLLAKI CFHHHFSVVE RVDSCASMYS ENSBTAP00000011906/1-1207 AKLLESGDLS MSSIKVDGIS MSFHNLLAKI CFHHRFSVVE RVDSCASMYS ENSTTRP00000010946/1-1171 AKLLESGDLS MSSVKVDGIS MSFQNLLAKI CFHHHFSVVE RVDSCASMYS bmy_22602T0/1-617 ---------- ---------- ---------- ---------- ---------- BACU006492/1-1234 AKLLESGDLS MSSVKVDGIS MSFQNLLAKI CFHHHFSVVE RVDSCASMYS 1201 1250 ENSP00000347416/1-1215 RSIQGHHVCL LVKKGENSVS VDGKCSDSTL LSNLLEEMKA TLAKC ENSBTAP00000011906/1-1207 RSIQGHHVCL LVKKGEKSVS VDGKCSDPTL LSNLLEEMKE TLATC ENSTTRP00000010946/1-1171 RSIQGHHVCL LVKKGEKSVS VDGKCSDSTL LSNVLEEMKE TLAKC bmy_22602T0/1-617 ---------- ---------- ---------- ---------- ----- BACU006492/1-1234 RSIQGHHVCL LVKKGEKSVS VDGKCSDSTL LSNVLEEMKE TLAKC