KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:14 2014 Check: 00 .. Name: ENSP00000313437/1-508 Len: 542 Check: 1195 Weight: 1.00 Name: ENSBTAP00000011924/1-499 Len: 542 Check: 437 Weight: 1.00 Name: ENSTTRP00000009243/1-508 Len: 542 Check: 8967 Weight: 1.00 Name: bmy_03943T0/1-539 Len: 542 Check: 5475 Weight: 1.00 Name: BACU008119/1-539 Len: 542 Check: 4636 Weight: 1.00 // 1 50 ENSP00000313437/1-508 MNCQQLWLGF LLPMTVSGRV LGLAE-VAPV DYLSQYGYLQ KPLEGSNNFK ENSBTAP00000011924/1-499 MNWQWLWLGF LLPLTVSCWA VGPEEKEAAV DYLLQYGYLQ KPLEGPDNFR ENSTTRP00000009243/1-508 MNWQRLWLGF LLPMTVSCWA LGPGEREAAV DYLLQYGYLQ KPLEEPDDFR bmy_03943T0/1-539 MNWQRLWLGF LLPMTVSCWA LGPGE-EAAV DYLLXYGYLQ KPLEGPDDFR BACU008119/1-539 MNWQRLWLGF LLPMTVLCWA LGPGE-EAAV DYLLQYGYLQ KPLEGPDDFR 51 100 ENSP00000313437/1-508 PEDITEALRA FQEASELPVS GQLDDATRAR MRQPRCGLED PFNQKTLKYL ENSBTAP00000011924/1-499 PEDVIEALRA FQEASELPVS GQLDDATSAR MRQPRCGLED PFNQKTLKYL ENSTTRP00000009243/1-508 PEDIIEALRA FQEASELPVS GQLDDATRAR MRQPRCGLED PFNQKTFKYL bmy_03943T0/1-539 PEDIIEALRA FQEASELPVS GQLDDATRAH MRQPRCGLED PFNQKTLKYL BACU008119/1-539 PEDIIEALRA FQEASELPVS GQLDDATRAR MRQPRCGLED PFNQKTLKYL 101 150 ENSP00000313437/1-508 LLGRWRKKHL TFRILNLPST LPPHTARAAL RQAFQDWSNV APLTFQEVQA ENSBTAP00000011924/1-499 LLGHWRKKHL TFRILNLPST LPSSTARAAL LQAFQYWSNV APLTFREVKA ENSTTRP00000009243/1-508 LLGRWRKKHL TFRILNLPST LPSYTARAAL LQAFQYWSNV APLTFREVKA bmy_03943T0/1-539 LLGRWRKKHL TFRILNLPST LPSSTARAAL FQAFQYWSNV APLTFREVKA BACU008119/1-539 LLGRWRKKHL TFRILNLPST LPSYTARAAL FQAFQYWSNA APLTFREVKA 151 200 ENSP00000313437/1-508 GAADIRLSFH GRQSSYCSNT FDGPGRVLAH ADIPELGSVH FDEDEFWTEG ENSBTAP00000011924/1-499 GWADIRLSFH GRHSLYCSNS FDGPGRVLAH ADIPELGSVH FDEDELWTEG ENSTTRP00000009243/1-508 GWADIRLSFH GRQSPYCSST FDGPGRVLAH ADIPELGSVH FDEDELWTEE bmy_03943T0/1-539 GWADIRLSFH GRQSPYCSNT FDGPGRVLAH ADIPELGSVH FDEDELWTEE BACU008119/1-539 GWADIRLSFH GRQSPYCSST FDGPGRVLAH ADIPELGSVH FDEDELWTEK 201 250 ENSP00000313437/1-508 TYRGVNLRII AAHEVGHALG LGHSRYSQAL MAPVYEGYRP HFKLHPDDVA ENSBTAP00000011924/1-499 TYRGVNLRII AAHEIGHALG LGHSRYTQAL MAPVYAGYRP YFKLHPDDVA ENSTTRP00000009243/1-508 TYRGVNLRII AAHELGHALG LGHSRYTQAL MAPVYAGYRP HFKLHPDDVA bmy_03943T0/1-539 TYRGVNLRII AAHELGHALG LGHSRYTQAL MAPVYAGYRP HFKLHPDDVA BACU008119/1-539 TYRGVNLRII AAHELGHALG LGHSRYTQAL MAPVYAGYRP HFKLHPDDVA 251 300 ENSP00000313437/1-508 GIQALYGKKS PVIRDEEEEE -TELPTVPPV PTEPSPMPDP CSSELDAMML ENSBTAP00000011924/1-499 GIQALYGKKS PEIEEEEEEE DTALPTIPLV PTEPSPMPDP CSSDLDAVML ENSTTRP00000009243/1-508 GIQALYGKKS PETEDEEEE- -TELPTVPQV PTEPSPMPDP CSGELDAMML bmy_03943T0/1-539 GIQALYGKKS PETEDEEEE- -TELPTVPQV PTEPSPMPDP CSGELDAMML BACU008119/1-539 GIQALYGKKS PEIEDEEEE- -MELPTVPQV PTEPSPMPDP CSGELDAMML 301 350 ENSP00000313437/1-508 GPRGKTYAFK GDYVWTVSDS GPGPLFRVSA LWEGLPGNLD AAVYSPRTQW ENSBTAP00000011924/1-499 GPRGKTYAFK GNYVWTVTDS GLGPLFQVSA LWEGLPGNLD AAVYSPRTQW ENSTTRP00000009243/1-508 GPRGKTYAFK GNYVWTVTDS GLGPLFQVSA LWEGLPGNLD AAVYSPRTQW bmy_03943T0/1-539 GPRGKTYAFK GNYVWTVTDS GLGPLFQVSA LWEGLPGNLD AAVYSPRTQW BACU008119/1-539 GPRGKTYAFK GNYVWTVTDS GLGPLFQVSA LWEGLPGNLD AAVYSPRTQW 351 400 ENSP00000313437/1-508 IHFFKGDKVW RYINFKMSPG FPKKLNRVEP NLDAALYWPL NQKVFLFKGS ENSBTAP00000011924/1-499 IHFFKGDKVW RYINFKMSPG FPKKLNRVGP NLDAALYWPI NKKVFLFKGS ENSTTRP00000009243/1-508 IHFFKGDKVW RYVNFKMSPG FPKKLNRVEP NLDSALYWPL NKKVFLFKGS bmy_03943T0/1-539 IHFFKGDKVW RYVNFKMSPG FPKKLNRVGP NLDAALYWPL NKKVFLFKGS BACU008119/1-539 IHFFKGDKVW RYVNFKMSPG FPKKLNRVEP NLDAALYWPL NKKVFLFKGS 401 450 ENSP00000313437/1-508 GYWQWDELAR TDFSSYPKPI KGLFTGVPNQ PSAAMSWQDG RVYFFKGKVY ENSBTAP00000011924/1-499 GYWQWDELAT TDFSRYPKPT KGLFTGVPDQ PSAAMSWRDG RVYFFKGKQY ENSTTRP00000009243/1-508 GYWQWDELAQ TDFSRYPKPT KRLFTGVPDQ PSGAMSWRDG RVYFFKGKQY bmy_03943T0/1-539 GYWQWDELAQ TDFSRYPKPT KGLFTGVPDQ PSGAMSWRDG RVYFFKGKQY BACU008119/1-539 GYWQWDELAQ TDFSRYPKPT KGLFTGVPDQ PSGAMSWRDG RVYFFKGKQY 451 500 ENSP00000313437/1-508 WRLNQQLRVE KGYPRNISHN WMHCRPRTID TTPSGGNTTP SGTGITLDTT ENSBTAP00000011924/1-499 WRLNQQLRAE KGFPRDIAHN WMHCRP--PN TTASDGDTDS SVTGTDHAAT ENSTTRP00000009243/1-508 WSLNRQLRVE KGYPRDIAHN WMHCRPQTPD TTPSDGDTTS SATGTTLDTT bmy_03943T0/1-539 WRLNRQLRVE KGYPRDIAHN WMHCRPQTPD TTPSDGDTAS SATGTTLDTT BACU008119/1-539 WRLNRQLRVE KGYPRDIAHN WMHCRPQTPD ATPSDGDTTS SATGTTLDTT 501 550 ENSP00000313437/1-508 LSATETTFEY ---------- ---------- ---------- -- ENSBTAP00000011924/1-499 G--------- ---------- ---------- ---------- -- ENSTTRP00000009243/1-508 SLAIDITFEH ---------- ---------- ---------- -- bmy_03943T0/1-539 SLAIDITLHT DRSAGDTILD ITPLATASTA LLFPGNVTLP EI BACU008119/1-539 SLAIDITLHT DRSAGDTILD ITPLATASTA LLFPGNVTHP EI