KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:15 2014 Check: 00 .. Name: BACU005642/1-519 Len: 546 Check: 6511 Weight: 1.00 Name: ENSP00000346874/1-515 Len: 546 Check: 6159 Weight: 1.00 Name: ENSBTAP00000011940/1-515 Len: 546 Check: 7090 Weight: 1.00 Name: bmy_04009T0/1-540 Len: 546 Check: 3822 Weight: 1.00 Name: ENSTTRP00000001190/1-440 Len: 546 Check: 1484 Weight: 1.00 // 1 50 BACU005642/1-519 ---------- --------MV SIPEYYEGKN VLLTGATGFL GKVLLEKLLR ENSP00000346874/1-515 ---------- --------MV SIPEYYEGKN VLLTGATGFL GKVLLEKLLR ENSBTAP00000011940/1-515 ---------- --------MV SIPEYYEGKN VLLTGATGFL GKVLLEKLLR bmy_04009T0/1-540 MDGSLFSEES YDESLRIRMV SIPEYYEGKN VLLTGATGFL GKVLLEKLLR ENSTTRP00000001190/1-440 ---------- ---------- ---------- ---------- ---------- 51 100 BACU005642/1-519 SCPKVNSVYV LVRQKAGQTP QERVEEVISG KLFDRLRDEN PDFREKIIAV ENSP00000346874/1-515 SCPKVNSVYV LVRQKAGQTP QERVEEVLSG KLFDRLRDEN PDFREKIIAI ENSBTAP00000011940/1-515 SCPKVNSVYV LVRQKAGQTP QERVEEVISG KLFDRLRDEN PDFREKIIAI bmy_04009T0/1-540 SCPKVNSVYV LVRQKAGQTP QERVEEVISG KLFDRLRVEN PDFREKIIAV ENSTTRP00000001190/1-440 ---------- ---------- ---------- ---------- --FREK-IAV 101 150 BACU005642/1-519 NSELTQPKLA LSEEDKEIII ESTNIIFHCA ATVRFNENLR DAVQLNVIAT ENSP00000346874/1-515 NSELTQPKLA LSEEDKEVII DSTNIIFHCA ATVRFNENLR DAVQLNVIAT ENSBTAP00000011940/1-515 NSELTQPKLA LSEEDKEIII DSTNIIFHCA ATVRFNENLR DAVQLNVIAT bmy_04009T0/1-540 NSELTQPKLA LSEEDKEIII ESTNVIFHCA ATVRFNENLR DAVQLNVIAT ENSTTRP00000001190/1-440 NSELTQPKLA LSEEDKEIII ESTNIIFHCA ATVRFNENLR DAVQLNVIAT 151 200 BACU005642/1-519 RQLILLAQQM KNLEVFMHVS TAYAYCNRKH IDEVVYPPPV DPKKLIDSLE ENSP00000346874/1-515 RQLILLAQQM KNLEVFMHVS TAYAYCNRKH IDEVVYPPPV DPKKLIDSLE ENSBTAP00000011940/1-515 RQLILLAQQM KNLEVFMHVS TAYAYCNRKH IDEVVYPPPV DPKKLIDSLE bmy_04009T0/1-540 RQLILLAQQM KNLEVFMHVS TAYAYCNRKH IDEVVYPPPV DPKKLIDSLE ENSTTRP00000001190/1-440 RQLILLAQQM KNLEVFMHVS TAYAYCNRKH IDEVVYPPPV DPKKLIDSLE 201 250 BACU005642/1-519 WMDDGLVNDI TPKLIGDRPN TYIYTKALAE YVVQQEGAKL NVAIVRPSIV ENSP00000346874/1-515 WMDDGLVNDI TPKLIGDRPN TYIYTKALAE YVVQQEGAKL NVAIVRPSIV ENSBTAP00000011940/1-515 WMDDGLVNDI TPKLIGDRPN TYIYTKALAE YVVQQEGAKL NVVIVRPSIV bmy_04009T0/1-540 WMDDGLVNDI TPKLIGDRPN TYIYTKALAE YVVQQEGAKL NVAIVRPSIV ENSTTRP00000001190/1-440 WMDDGLVNDI TPKLIGDRPN TYIYTKALAE YVVQQEGAKL NVAIVRPSIV 251 300 BACU005642/1-519 GASWKEPFPG WIDNFNGPSG LFIAAGKGIL RTMRASNNAL ADLVPVDVVV ENSP00000346874/1-515 GASWKEPFPG WIDNFNGPSG LFIAAGKGIL RTIRASNNAL ADLVPVDVVV ENSBTAP00000011940/1-515 GASWKEPFPG WIDNFNGPSG LFIAAGKGIL RTMRASNNAL ADLVPVDVVV bmy_04009T0/1-540 GASWKEPFPG WIDNFNGPSG LFIAAGKGIL RTMRASNNAL ADLVPVDVVV ENSTTRP00000001190/1-440 GASWKEPFPG WIDNFNGPSG LFIAAGKGIL RTMRASNNAL ADLVPVDVVV 301 350 BACU005642/1-519 NMSLAAAWYS GVNRPRNIMV YNCTTGSTNP FHWGEVEYHV ISTFKRNPLE ENSP00000346874/1-515 NMSLAAAWYS GVNRPRNIMV YNCTTGSTNP FHWGEVEYHV ISTFKRNPLE ENSBTAP00000011940/1-515 NMSLAAAWYS GVNRPRNIMV YNCTTGSTNP FHWGEVEYHV ISTFKRNPLE bmy_04009T0/1-540 NMSLAAAWYS GVNRPRNIMV YNCTTGSTNP FHWGEVEYHV ISTFKRNPLE ENSTTRP00000001190/1-440 NMSLAAAWYS GVNRPRNIMV YNCTTGSTNP FHWGEVEYHV ISTFKRNPLE 351 400 BACU005642/1-519 QAFRRPNVNL TSNHLLYHYW IAVSHKAPAF LYDIYLRMTG RSPRMMKTIT ENSP00000346874/1-515 QAFRRPNVNL TSNHLLYHYW IAVSHKAPAF LYDIYLRMTG RSPRMMKTIT ENSBTAP00000011940/1-515 QAFRRPNVNL TSNHLLYYYW IAVSHKAPAF LYDIYLRMTG RSPRMMKTIT bmy_04009T0/1-540 QAFRRPNVNL TSNHLLYHYW IAVSHKAPAF LYDIYLRMTG RSPRMMKTIT ENSTTRP00000001190/1-440 QAFRRPNVNL TSNHLLYHYW IAVSHKAPAF LYDIYLRMTG RSPRMMKTIT 401 450 BACU005642/1-519 RLHKAMVFLE YFTSNSWVWN TDNVNMLMNQ LNPEDKK--- ----TFNIDV ENSP00000346874/1-515 RLHKAMVFLE YFTSNSWVWN TENVNMLMNQ LNPEDKK--- ----TFNIDV ENSBTAP00000011940/1-515 RLHKAMVFLE YFTSNSWVWS TDNVNMLMNQ LNPEDKK--- ----TFNIDV bmy_04009T0/1-540 RLHKAMVFLE YFTSNSWVWN TDNVNMLMNQ LNPEDKKARK LICVTFNIDV ENSTTRP00000001190/1-440 RLHKAMVFLE YFTSNSWVWN TDNVNMLMNQ LNPEDKK--- ----TFNIDV 451 500 BACU005642/1-519 RQLHWAEYIE NYCMGTKKYV LNEEMSGLPA ARKHLNKLRN IRYGFNTILV ENSP00000346874/1-515 RQLHWAEYIE NYCLGTKKYV LNEEMSGLPA ARKHLNKLRN IRYGFNTILV ENSBTAP00000011940/1-515 RQLHWAEYIE NYCMGTKKYV LNEEMSGLPA ARKHLNKLRN IRYGFNTILV bmy_04009T0/1-540 RQLHWAEYIE NYCMGTKKYV LNEEMSGLPA ARKHLNKLRN IRYGFNTILV ENSTTRP00000001190/1-440 RQLHWAEYIE NYCMGTKKYV LNEEMSGLPA ARKHLNKLRN IRYGFNTILV 501 550 BACU005642/1-519 ILIWRIFIAR SQMARNIWYF VIT--YNTYT FIQDEERKGL PWQSSG ENSP00000346874/1-515 ILIWRIFIAR SQMARNIWYF VVSLCYKFLS YFRASSTMRY ------ ENSBTAP00000011940/1-515 ILIWRIFIAR SQMARNIWYF VVSLCYKFLS YFRASSTMRY ------ bmy_04009T0/1-540 ILIWRIFIAR SQMARNIWYF VVSLCYKFLS YFRASSTMRY ------ ENSTTRP00000001190/1-440 ILIWRIFIAR SQMARNIWYF VVSLCYKFLS YFRASSTMRY ------