KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:16 2014 Check: 00 .. Name: ENSP00000360500/1-342 Len: 358 Check: 5524 Weight: 1.00 Name: ENSBTAP00000011942/1-339 Len: 358 Check: 9999 Weight: 1.00 Name: ENSTTRP00000013337/1-295 Len: 358 Check: 6945 Weight: 1.00 Name: bmy_15159T0/1-323 Len: 358 Check: 33 Weight: 1.00 Name: BACU000252/1-216 Len: 358 Check: 6807 Weight: 1.00 // 1 50 ENSP00000360500/1-342 MADKMVRTPK CSRCRNHGFL VPVKGHAGKC RWKQCLCEKC YLISERQKIM ENSBTAP00000011942/1-339 QASKMLRTPK CSRCRNHGFL VPVKGHAGKC RWKQCTCKKC FLITERQRIM ENSTTRP00000013337/1-295 MADKMLRAPR CSRCRNHGFL VPVKGHAGKC RWKQCTCE-C YLIT-RQKIT bmy_15159T0/1-323 ----MLRAPR CSRCRNHGFL VPLKGHAGKC RWKQCTCEKC YLITERQKIM BACU000252/1-216 ----MLRAPR CCRCRNHGFL VPLKGHAGKC RWKQCTCEKC YLITQRQKIM 51 100 ENSP00000360500/1-342 AAQKVLKTQA AEEEQEAALC AQGPKQASGA AAAAPAPVPV PAASLRPLSP ENSBTAP00000011942/1-339 AAQKMLKKQA SGEEQEVALC AQGTQLASGG AAGNPGP--- ---SFCPLPP ENSTTRP00000013337/1-295 AAQQVLQKQV SEEEQEVALC AQGPQLASGD AAAVPGS--- ---SLCPLPL bmy_15159T0/1-323 AAQQVLTNQA SEEEQEVALC VQGPQLASGA AATVLGS--- ---SFRTLPL BACU000252/1-216 AAQQVLTNQA SEEEQEVALC VQGPQLASGA AA-------- ---------- 101 150 ENSP00000360500/1-342 GTPSGDADPG PEGRAAACFF EQPPRGRNPG PRALQPVLGG R--SHVEPSE ENSBTAP00000011942/1-339 LVPLGDAQPG PSGQAATCFP ERPPRGRSPN PSAFQLVLGG HNGGHVGLSE ENSTTRP00000013337/1-295 PAASGDAHPG PEGRATACFL ERPQQGWSPG RSTLQPVLGG R--GHVGPSK bmy_15159T0/1-323 PAASGVAHPG PEGRAAACFP ERRPRGPSPG PSAFQPVLGG R--GHVGPRE BACU000252/1-216 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000360500/1-342 RAAVAMPSLA GPPFGAEAAG SGYPGPLDLR RPMRTVPGPL FTDFVRPLNI ENSBTAP00000011942/1-339 QAARARASSL EPQLAAEAAG RGDPSCLELL RPPRPVPSPP FTNFGLPLSI ENSTTRP00000013337/1-295 QAAAAMPSSL RPQLGAEAAG RGCPGRLELS RSLRPVPSPP FANFGPPLSV bmy_15159T0/1-323 RAAAAMPSSL RPQLGTEAAG WCCPGRLELR RPLRQALSPP FADFGPPLSI BACU000252/1-216 ---------- ---------- ---------- ---------- ----GPPLSV 201 250 ENSP00000360500/1-342 NPDRALGPEY PG-------- -GSSMHPYCP FPLGYLDAP- -PGVPLQQGF ENSBTAP00000011942/1-339 NSDSVVRSEC LEREPPKLYP SCSSTDPCRP FPLGYQDASP SVGIPLQQSF ENSTTRP00000013337/1-295 NSDRVVGSGY LD-------- -CSSMHPYHP FLLRYQDASL TPRVPLQQGF bmy_15159T0/1-323 NSDCVVGSEY LEREPSKLYR SCSSMQPYHP FLLGYQDASL TPGVPLQQDF BACU000252/1-216 NSDHVVGSEY LEREPSKLYR SCSSMQPYHP FLLGYQDASL TPGVPLQQDF 251 300 ENSP00000360500/1-342 RHVSRSQYQG GGLVSEPGGD FQPSYYLPP- --PPPPLPPL PPLPPQPQFL ENSBTAP00000011942/1-339 QHLSYSHYQG GGLVAEPVGD FQPSYCPPLG QAPQ------ ------PQFL ENSTTRP00000013337/1-295 QHMSCSHYNG AGLVEEPAED LQTRYYL-L- --PP------ ------AQL- bmy_15159T0/1-323 RHVSCSHYHG AGLVVEPVED LQPGYYLPP- --PP------ ------PQF- BACU000252/1-216 RHVSCSHYHG AGLVVEPVED LQPGYYLPP- --PP------ ------PQF- 301 350 ENSP00000360500/1-342 PPGYLSALHF LPPPPPPPPP SSFSLTVLFD TDKENTDDQD AEVLSGEPSQ ENSBTAP00000011942/1-339 PPGFLSALQV LLPPLPPPPS ATFSLTILSD TDKENTDDQD VEGPS-EPSQ ENSTTRP00000013337/1-295 PPRYLTMLHR V---PPPPPS --SSLPIVSD ADKENT---- ---------- bmy_15159T0/1-323 PPRYLSVLHC L----PPPPS --FSLSIVSD VDKENTDDQD AEGLC-EPSQ BACU000252/1-216 PPRYLSVLHC L----PPPPS --FSLSIVSD VD---TDDQY AEGPC-EPSQ 351 400 ENSP00000360500/1-342 PSSQEQSD ENSBTAP00000011942/1-339 PSSQEESN ENSTTRP00000013337/1-295 -------- bmy_15159T0/1-323 PSSQEQSD BACU000252/1-216 PSSQEQSD