KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:16 2014 Check: 00 .. Name: ENSP00000384053/1-897 Len: 1109 Check: 148 Weight: 1.00 Name: ENSBTAP00000011947/1-890 Len: 1109 Check: 4980 Weight: 1.00 Name: bmy_01163T0/1-671 Len: 1109 Check: 5498 Weight: 1.00 Name: BACU000861/1-1075 Len: 1109 Check: 8905 Weight: 1.00 Name: ENSTTRP00000001023/1-899 Len: 1109 Check: 3271 Weight: 1.00 // 1 50 ENSP00000384053/1-897 MVLAQGLLSM ALLALCWERS LAGAEETIPL QTLRCYNDYT SHITCRWADT ENSBTAP00000011947/1-890 MTLTQGLLPL ALLVLCWGLS ITGAEETVPM QTLRCHNDYT SRIICRWADT bmy_01163T0/1-671 MALTQGLLPL ALLVLCWGPC VAGAQGTFPL QTLRCHNDYT SRIVCRWADT BACU000861/1-1075 MALTRGLLPL ALLVLCWGPC VAGAQGTFPL QTLRCHNDYT SRIVCR---- ENSTTRP00000001023/1-899 MALAPGXXXX XXXXXXXXXX XXXXXXTFPL QTLRCHNDYT SRIVCRWADT 51 100 ENSP00000384053/1-897 QDAQRLVNVT LIRRVNEDLL EPVSCDLSDD MP--W-SACP HPRCVPRRCV ENSBTAP00000011947/1-890 QDAQRLVNVT LYRRPKEDHP QRVSCSLSDD KP--W-LNSP CSGCVPRKCV bmy_01163T0/1-671 QDAQRLVNVT LHRRLNRRVR PGLGPEGRKG LCLLWGLDDP CPRCVPRRFI BACU000861/1-1075 ---------- -------GLP QPVSCDLSDG MP--W-FDGH CPGCVPRICV ENSTTRP00000001023/1-899 QDAQRLVNVT LHRRLNRGLP QPVSCDLSDG MP--W-FNGH CPGCVPRMCV 101 150 ENSP00000384053/1-897 IPCQSFVVTD VDYFSFQPDR PLGTRLTVTL TQHVQPPEPR DLQISTDQDH ENSBTAP00000011947/1-890 IPYRNFVLAD FDYFSFRPDQ PLVTELTVNL SQHVQPPTPK DLNITATRES bmy_01163T0/1-671 IPYRSFAFAD YDYFSFRPDR PVGTQPTVTL SQHVQPPAPK DLNIRAAGDG BACU000861/1-1075 IPYEVFVIAD HDYFSFRPDQ PLGTQLTVTL SQHVQPPAPK DLNIRAAGDG ENSTTRP00000001023/1-899 IPYEVFVIAD HDYFSFRPDQ PLGAQLTVTL SQHXXPPAPR DLNISVRGQC 151 200 ENSP00000384053/1-897 FLLTWSVALG SPQSHWLSPG DLEFEVVYKR LQDSWEDAAI LLSNTSQATL ENSBTAP00000011947/1-890 LLLFWSIAHE GFQSHWLSS- -LEFEVVYKR LQDSWEDALT IHSKSPQAIL bmy_01163T0/1-671 FLLSWSVAHG GSQSHWLSS- -LEFEVVYRR LQDSWEDAPT IYSSSSRAIL BACU000861/1-1075 FLLSWSVRHG GSQSHWLSS- -LEFEVVYRR LQDSWEDAPT IYSSSSRAIL ENSTTRP00000001023/1-899 LL--WSVAHG GSQSHWLSS- -LEFEVVYRR LQDSWEDAPT IYSSASRAIL 201 250 ENSP00000384053/1-897 GPEHLMPSST YVARVRTRLA PGSRLSGRPS KWSPEVCWDS QPGDEAQPQN ENSBTAP00000011947/1-890 ELKDLQPSST YVARVRTRLA PGSGLSGRPS QWSQEVSWNS QPGDEAQPQN bmy_01163T0/1-671 GPLHLMPSST YVARVRSRLA PGSGLSGRPS QWSTEIRWAS QPGNESQPQN BACU000861/1-1075 GPEHLMPSST YVARVRTRRA PGSGLSGRPS QWSTEVRWAS QPGNESQPQN ENSTTRP00000001023/1-899 GPEHLIPSST YVARVRTRLA PGSGLSGRPS QWSTEVRWAS PPGNESQPQN 251 300 ENSP00000384053/1-897 LECFFDGAAV LSCSWEVRKE VASSVSFGLF YKPSPDA--- ---GEEECSP ENSBTAP00000011947/1-890 LQCFFDGATL LTCTWEVRSE VTHSVSFTLF YKTGPSA--- ---REEECSP bmy_01163T0/1-671 LQCFFDGAAL LRCSWEVRSE VTSSVFFTLF YKSGPSA--- ---REEECSP BACU000861/1-1075 LQCFFNGAAL LSCSWEVRSE VASSVFFTLF YKSSPSA--- ---REEECSP ENSTTRP00000001023/1-899 LQCFFDGAAL LRCSWEVRSE VTSSVFFTLF YKSGPSASFA VILREEECSP 301 350 ENSP00000384053/1-897 VLREGLGSLH TRHHCQIPVP DPATHGQYIV SVQPRRAEKH IKSSVNIQMA ENSBTAP00000011947/1-890 VQKE-TGSPY IQHRCQIPVP DPRNYSQYIV SVRPKVEERL IKSSDNIQMA bmy_01163T0/1-671 VQTEETSSPY VRHCCQIPVP DPRNHSQYIV SVRPKEEEKL IKSSDNIQMA BACU000861/1-1075 VRTEETSSPY VRHRCQIPVP EPRDHSQYLV SVRPKEEEKL MKSSDNIQMA ENSTTRP00000001023/1-899 VQTEETSSPY VRHCCQIPVP DPRNHSQYIV SVRPKAEEKL IKSSDNIQMA 351 400 ENSP00000384053/1-897 PPSLNVTKDG DSYSLRWETM KMRYEHIDHT FEIQYRKDTA TWKDSKTETL ENSBTAP00000011947/1-890 PPTLNVTKGR DGYILHWREE KMSYSHIACI FQVQYKKEGA SWEDTKTEDF bmy_01163T0/1-671 RLTLNVTKGR DGYILHWKEG KMNYEHIARI FQVQYKKEEA SWEETKTEDF BACU000861/1-1075 PPTLNMTKGR DGYILHWKEG KMNYEHIACI FQVQYKKEAA SWE-TKTEDF ENSTTRP00000001023/1-899 SPTLNLTKGR DGYILHWKEG KMNYEHIACI FQVQYKKEAA SWEETKTEDF 401 450 ENSP00000384053/1-897 QNAHSMALPA LEPSTRYWAR VRVRTSRTGY NGIWSEWSEA RSWDTESVLP ENSBTAP00000011947/1-890 QNAHTMSLPP LEPASRYQAR VRVKPDPGNY NGIWSEWSEA RSWDTDWVLP bmy_01163T0/1-671 QNAHSMCLPP LEAATRYQAR VRVKPDPQGY NGIWSEWSEE SSWDTEW--- BACU000861/1-1075 QNAHSMCLPP PEPATRYQAR VRVKPDPQGY DGIWSKWSEE SSWDTEWVLP ENSTTRP00000001023/1-899 QNAHSMCLPP LEPATRYQAR VRVKPDPRGY NGIWSEWSEE SSWDTEWVLP 451 500 ENSP00000384053/1-897 MWVLALIVIF LTIAVLLALR FCGIYGYRLR RKWEEKIPNP SKSHLFQNGS ENSBTAP00000011947/1-890 MWVLALILVI STLILLPVLH FCGVYGYRLN RKWEEKIPNP SKSHLFQNGS bmy_01163T0/1-671 ---------- ---------- ---------- ---------- ---------- BACU000861/1-1075 MWVLALILVI STLILLVSLR FCGVYWYRLN QKWEEKIPSP SKSHLFQNGR ENSTTRP00000001023/1-899 TWVLALTLVI STLILLVSLR FCGIYGYRLN QKWEEKIPNP SKS-LFQNGR 501 550 ENSP00000384053/1-897 AELWPPGSMS AFTSGSPPHQ GPWGSRFPE- LEGVFPVGFG DSEVSPLTIE ENSBTAP00000011947/1-890 AGLRMPDSMA TLGSGSHPHK GPWGSSCPQL LEGVFPVDCR HSEVSPLTTE bmy_01163T0/1-671 ---------- ---------- ---------- -------DFG HSEVSPLTTE BACU000861/1-1075 AGLRLPHSVR VVSSGSHAHR GPWGGSCPQ- PEGASPVDFG HSEVSPLTTE ENSTTRP00000001023/1-899 AGLRLPQGAR AVGSGSHAHR GLWGASFAQ- PEGASPVDFG HSEVSPLTTE 551 600 ENSP00000384053/1-897 DPKHVCDPPS GPDTTPAASD LPTEQPPSPQ PGPPAASHTP EKQASSFDFN ENSBTAP00000011947/1-890 DPKDACDSSS EPDMTLTASD LPTEQPPSPP TGLAAPSSRP ESQASGFDFN bmy_01163T0/1-671 DPKDACDSSP EPDMTLVTSD LPTEQPTRPP PELATPSSRP ESQASSFDFN BACU000861/1-1075 DPKDACDSSP EPDMTLVASD LPTEQPPRPP PELATPSSRP ESQASGFDFN ENSTTRP00000001023/1-899 DPKDACDSSS EPDMTLVTSD LRTEQPPGPP PELATPASRP ESQASGFDFN 601 650 ENSP00000384053/1-897 GPYLGPPHSR SLPDILGQPE PPQEGGSQKS PPPGSLEYLC LPAGGQVQLV ENSBTAP00000011947/1-890 GPYLGPPHSC SLPDLMGQQV PPQTGVSRKP QSPGSLEYLC LPAGGQVQLV bmy_01163T0/1-671 GPYLGPPYSR SLPDIVGQQG PLRTGVSRKP QPPGSLKYLF LPAGGQVQLV BACU000861/1-1075 GPYLGPPHSH SLPDIVGQQG PLQTGTSRKP QPPESPKYLF LPAGGQVQLV ENSTTRP00000001023/1-899 GPYLGPLDSR SLPDIVGQQG PLRTGTSRKP QPPGSLEYLC LPTGGQVQLV 651 700 ENSP00000384053/1-897 PLAQAMGPGQ AVEVERRPSQ GAAGSPSLES GGGPAPPALG PRVGGQDQKD ENSBTAP00000011947/1-890 PLAQVKRQGK AGDGDTKSSP GAQTSPSLES GVDPAPPEPG LMGVGQDQKD bmy_01163T0/1-671 PLAQAMGPGK ARDADLRSSP GTEGSPSPES GAGPVPPEPG VMVGGQGPKD BACU000861/1-1075 PLAQVMGPGK ARDADLRSSP GTEGSPSLES GAGPAPPEPG VMVGGQGPKD ENSTTRP00000001023/1-899 PLAQVMGPGK ARDADLRSSP GTEGSPSLEP GAGPASPEPG VMVGGQGPKD 701 750 ENSP00000384053/1-897 -SPVAIPMSS GDTEDPGVAS GYVSSADLVF TPNSGASSVS LVPSLGLPSD ENSBTAP00000011947/1-890 RAPTVLPTGL --PEDGTVAS GYVTTPDLIF TPPIGAPSPS QAAPPNLPSD bmy_01163T0/1-671 RAPPGLPTGS RGPREGTVAT GYVTTADLTF TLPIGAPSAS QAPPLGLPSD BACU000861/1-1075 RAPPGLPTGS RGPEEGTVAT GYVTTADLTF TPPTGAPSPS QAPPLGLPSD ENSTTRP00000001023/1-899 RAPPGLPTGS RGPEEGTVAT GYVTTAELTF TPPTGAPSPS QAPPLSLPSD 751 800 ENSP00000384053/1-897 QTPSLCPGLA SGPPGAPGPV KSGFEGYVEL PPIEGRSPRS PRNNPVPPEA ENSBTAP00000011947/1-890 QNPTFHPGLA DGPPVASAPQ KPEFEGYVEL PPATGQFPQS PLASPAPPRV bmy_01163T0/1-671 QNPYFRPGLG DGLPASSAL- ---------- ---------- ---------- BACU000861/1-1075 QNPSLCPGLA AGPPGSLAPL KPEFEGYVEL PPTTGQFPQS PLASPAPPAA ENSTTRP00000001023/1-899 RNPSLCPGLA DGPPGPLAPL KPEFEGYVDL PPTAGQFPQS PLASPAPPAA 801 850 ENSP00000384053/1-897 KSPVLNPGER PADVSPTSPQ PEGLLVLQQV GDYCFLPGLG PGPLSLRSKP ENSBTAP00000011947/1-890 SSPVLSPGPH RADVSPTSPT PEGLLVLQQV GDYCFLP--- -GPLSPQSKP bmy_01163T0/1-671 ---------- ---------- ---------- ---------- ---------- BACU000861/1-1075 SSAVLSPGPP RADVFSVSPT PEGLLVLQQV GDYCFLPGPG SGPLSPQSKP ENSTTRP00000001023/1-899 SSPVLGPGPP RADVFSVSPT PEGLLVLQQV GDYCFLPGPG SGPLSPQSKP 851 900 ENSP00000384053/1-897 SSPGPGPEIK NLDQAFQVKK PPGQAVPQVP VIQLFKALKQ QDYLSLPPWE ENSBTAP00000011947/1-890 TSPGPCPEIR DLNQVVQAKK PPAQAFPQVP AIQLFKALKQ QDYLSLPPWD bmy_01163T0/1-671 ---------- ---------- ---------- ---------- ---------- BACU000861/1-1075 TSPGPCPEIR DLNQVFQAKK PPSQAIPQVP AIQLFKALKQ QDYLSLPPWD ENSTTRP00000001023/1-899 TSPGPCPEIK DLNQVFQAKK PPSQATPQVP AIQLFKALKQ QDYLSLPPWD 901 950 ENSP00000384053/1-897 VNKPGEVC-- ---------- ---------- ---------- ---------- ENSBTAP00000011947/1-890 INRPGQVC-- ---------- ---------- ---------- ---------- bmy_01163T0/1-671 ---------- ---------- ---------- ---------- ---------- BACU000861/1-1075 VSRPGEPFPT SKLHLSEPHS KFGKIVDRID SDGDGFVTTE ELKTWIKRVQ ENSTTRP00000001023/1-899 VSRPGEVR-- ---------- ---------- ---------- ---------- 951 1000 ENSP00000384053/1-897 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011947/1-890 ---------- ---------- ---------- ---------- ---------- bmy_01163T0/1-671 ---------- ---------- ---------- ---------- ---------- BACU000861/1-1075 KRCIYDNVAK VWKDYDRDKD DKISWEGYKQ ATYGYYLGNP TEFHDTSDHH ENSTTRP00000001023/1-899 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000384053/1-897 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011947/1-890 ---------- ---------- ---------- ---------- ---------- bmy_01163T0/1-671 ---------- ---------- ---------- ---------- ---------- BACU000861/1-1075 TFKKMLPHDE RRFKAADLDG DQTATREEFT AFLHPEEFEH MKEIVVLETL ENSTTRP00000001023/1-899 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000384053/1-897 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011947/1-890 ---------- ---------- ---------- ---------- ---------- bmy_01163T0/1-671 ---------- ---------- ---------- ---------- ---------- BACU000861/1-1075 EDIDKNGDGF VDQDEYIADM FSHEETGPEP DWVLSEREQF NEFRDLNKDG ENSTTRP00000001023/1-899 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000384053/1-897 --------- ENSBTAP00000011947/1-890 --------- bmy_01163T0/1-671 --------- BACU000861/1-1075 KLDKDEIRH ENSTTRP00000001023/1-899 ---------