KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:18 2014 Check: 00 .. Name: ENSP00000264436/1-726 Len: 750 Check: 1861 Weight: 1.00 Name: BACU006031/1-583 Len: 750 Check: 3030 Weight: 1.00 Name: ENSBTAP00000011966/1-724 Len: 750 Check: 5338 Weight: 1.00 Name: bmy_18384T0/1-458 Len: 750 Check: 3500 Weight: 1.00 Name: ENSTTRP00000008063/1-724 Len: 750 Check: 3973 Weight: 1.00 // 1 50 ENSP00000264436/1-726 ---------- ---------- ----MSEETV PEAASPPPPQ GQPYFDRFSE BACU006031/1-583 MDVFIGSVNQ KSRVPGVDCR PTRTMSEETV PEAASPPSAQ GQQYFDRFSE ENSBTAP00000011966/1-724 ---------- ---------- ----MSEETV PEAASPPPAQ GQQYFDRFSE bmy_18384T0/1-458 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008063/1-724 ---------- ---------- ----MSEEPV PEAASPPSAQ GQQYFDRFSE 51 100 ENSP00000264436/1-726 DDPEYMRLRN RAADLRQDFN LMEQKKRVTM ILQSPSFREE LEGLIQEQMK BACU006031/1-583 DDPEYLRLRN RAADLRQDFN LMEQKKRVTM ILQSPSFREE LEGLIQEQMK ENSBTAP00000011966/1-724 DDPEYLRLRS RAADLRQDFN LMEQKKRVTM ILQSPSFREE LEGLIQEQMK bmy_18384T0/1-458 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008063/1-724 DDPEYLRLRN RAADLRQDFN LMEKKKRVTM ILQSPSFREE LEGLIQEQMK 101 150 ENSP00000264436/1-726 KGNNSSNIWA LRQIADFMAS TSHAVFPTSS MNVSMMTPIN DLHTADSLNL BACU006031/1-583 KGNNSSNIWA LRQIADFMAS TSHAVFPTSS MNFSMMTPIN DLHTADSLNL ENSBTAP00000011966/1-724 KGNNSSNIWA LRQIADFMAS TSHAVFPTSS MNFSMMTPIN DLHTADSLNL bmy_18384T0/1-458 ---------- ---------- ---------- ----MMTPIN DLHTADSLNL ENSTTRP00000008063/1-724 KGNNSSNIWA LRQIADFMAS TSHAVFPTSS MNFSMMTPIN DLHTADSLNL 151 200 ENSP00000264436/1-726 AKGERLMRCK ISSVYRLLDL YGWAQLSDTY VTLRVSKEQD HFLISPKGVS BACU006031/1-583 AKGERLMRCK ISSVYRLLDL YGWAQLSDTY VTLRVSKEQD HFLISPKGVS ENSBTAP00000011966/1-724 AKGERLMRCK ISSVYRLLDL YGWAQLSDTY VTLRVSKEQD HFLISPKGVS bmy_18384T0/1-458 AKGERLMRCK ISSVYRLLDL YGWAQLSDTY VTLRVSKEQD HFLISPKGVS ENSTTRP00000008063/1-724 AKGERLMRCK ISSVYRLLDL YGWAQLSDTY VTLRVSKEQD HFLISPKGVS 201 250 ENSP00000264436/1-726 CSEVTASSLI KVNILGEVVE KGSSCFPVDT TGFCLHSAIY AARPDVRCII BACU006031/1-583 CNEVTASSLI KVNILGEVVE KGSSCFPVDT TGFCLHSAIY AARPDVRCVI ENSBTAP00000011966/1-724 CSEVTASSLI KVNILGEVVE KGSSCFPVDT TGFCLHSAIY AARPDVRCII bmy_18384T0/1-458 CNEVTASSLI KVNILGEVVE KGSSCFPVDT TGFCLHSAIY AARPDVRCVI ENSTTRP00000008063/1-724 CNEVTASSLI KVNILGEVVE KGSSCFPVDT TGFCLHSAIY AARPDVRCVI 251 300 ENSP00000264436/1-726 HLHTPATAAV SAMKWGLLPV SHNALLVGDM AYYDFNGEME QEADRINLQK BACU006031/1-583 HLHTPATAAV SAMKWGLLPV SHNALVVGDM AYYDFNGEME QEADRINLQK ENSBTAP00000011966/1-724 HLHTPATAAV SAMKWGLLPV SHDALLVGDM AYYDFNGEME QEADRINLQK bmy_18384T0/1-458 HLHTPATAAV SAMKWGLLPV SHNALVVGDM AYYDFNGEME QEADRINLQK ENSTTRP00000008063/1-724 HLHTPATAAV SAMKWGLLPV SHNALLVGDM AYYDFNGEME QEADRINLQK 301 350 ENSP00000264436/1-726 CLGPTCKILV LRNHGVVALG DTVEEAFYKI FHLQAACEIQ VSALSSAGGV BACU006031/1-583 CLGPTCKILV LRNHGVVALG DTVEEAFYKI FHLQAACEIQ VSALSSAGGV ENSBTAP00000011966/1-724 CLGPTCKILV LRNHGVVALG DTVEEAFYKI FHLQAACEIQ VSALSSAGGV bmy_18384T0/1-458 CLGPTCKILV LRNHGVVALG DTVEEAFYKI FHLQAACEIQ VSALSSAGGV ENSTTRP00000008063/1-724 CLGPTCKILV LRNHGVVALG DTVEEAFYKI FHLQAACEIQ VSALSSAGGV 351 400 ENSP00000264436/1-726 ENLILLEQEK HRPHEVGSVQ WAGSTFGPMQ KSRLGEHEFE ALMRMLDNLG BACU006031/1-583 ENLILLEQEK HRPHEVGSVQ WAGSTFGPMQ KSRLGEHEFE ALMRMLDNLG ENSBTAP00000011966/1-724 ENLILLEQEK QRPHEVGSVQ WAGGTFGPMR KSRLGEHEFE ALMRMLDNLG bmy_18384T0/1-458 ENLILLEQEK HRPHEVGSVQ WAGSTFGPMQ KSRLGEHEFE ALMRMLDNL- ENSTTRP00000008063/1-724 ENLILLEQEK HRPHEVGSVQ WAGSTFGPMQ KSRLGEHEFE ALMRMLDNLG 401 450 ENSP00000264436/1-726 YRTGYTYRHP FVQEKTKHKS EVEIPATVTA FVFEEDGAPV PALRQHAQKQ BACU006031/1-583 YRTGYTYRYP FVQEKTKHKS EVEIPATVTA FVFEEDGTPV PALRQHAQKQ ENSBTAP00000011966/1-724 YRTGYTYRYP FVQEKTKHKS EVEIPATVTA FVFEEDGAPV PALRQYAQKQ bmy_18384T0/1-458 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008063/1-724 YRTGYTYRYP FVQEKTKHKS EVEIPATVTA FVFEEDGTPV PALRQHAQKQ 451 500 ENSP00000264436/1-726 QKEKTRWLNT PNTYLRVNVA DEVQRSMGSP RPKTTWMKAD EVEKSSSGMP BACU006031/1-583 QKEKTRWLNT PNTYLRVNVA DEVQRSMGSP RPKTTWMKAD EVEKSSSGMP ENSBTAP00000011966/1-724 QKEKTRWLNT PNTYLRVNVA DEVQRSMGSP RPKTTWMKAD EVEKSSSGMP bmy_18384T0/1-458 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008063/1-724 QKEKTRWLNT PNTYLRVNVA DEVQRSMGSP RPKTTWMKAD EVEKSSSGMP 501 550 ENSP00000264436/1-726 IRIENPNQFV PLYTDPQEVL EMRNKIREQN RQDVKSAGPQ SQLLASVIAE BACU006031/1-583 IRIENPNQFV PLYTDPQEVL DMRNKLREQN RQDVKSAGPQ SQLLAGVIAE ENSBTAP00000011966/1-724 IRIENPNQFV PLYTDPQEVL DMRNKIREQN RQDVKSAGPQ SQLLASVIAE bmy_18384T0/1-458 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008063/1-724 IRIENPNQFV PLYTDPQEVL DMRNKIREQN RQDVKSAGPQ SQLLASVIAE 551 600 ENSP00000264436/1-726 KSRSPSTESQ LMSKGDEDTK DDSEETVPNP FSQLTDQELE EYKKEVERKK BACU006031/1-583 KSRSPVQQTL PLSGG----- ---------- ---------- ---------- ENSBTAP00000011966/1-724 KSRSPSTDSQ LMSQGQADAK DESEEMAPNP FSQLTDQELE EYKKEVERKK bmy_18384T0/1-458 -----STESQ LMSRGQADTK DEAEEIAPNP FSQLTDQELE EYKKEVERKK ENSTTRP00000008063/1-724 KSRSPSTESQ LMSRGQADTK DEAEEIAPNP FSQLTDQELE EYKKEVERKK 601 650 ENSP00000264436/1-726 LELDGEKETA PEEPGSPAKS APASPVQSPA KEAETKSPLV SPSKSLEEGT BACU006031/1-583 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011966/1-724 LELEGEKEPV PEEPGSPVKS APASPAQSPA K-SEPKSPVG SPSKSVDEEA bmy_18384T0/1-458 LELDGEKEPA PEEPGSPVKS APASPAQSPA K-SETKSPVG SPSKSVDEDA ENSTTRP00000008063/1-724 LELDGEKEPA PEEPGSPVKS APASPAQSPA K-SETKSPVG SPSKSVDEDA 651 700 ENSP00000264436/1-726 KKTETSKAAT TEPETTQPEG VVVNGREEEQ TAEEILSKGL SQMTTSADTD BACU006031/1-583 ---------- ---ETCLPSG SAVPG----- ---------- ---------- ENSBTAP00000011966/1-724 KLTETSE-VT TEPDVTQPEG VVVNGREDEQ TVEDTLSKGL SQMTTSADTD bmy_18384T0/1-458 KKTEMSK-AT TEPEATQPEG VVVNGREDER TAEDILSKGL SQMTTSADTD ENSTTRP00000008063/1-724 QKTETSK-AT TEPEKTQPEG VVVNGREDEQ TAEDILSKGL SQMTTSADTD 701 750 ENSP00000264436/1-726 VDTSKDKTES VTSGPMSPEG SPSKSPSKKK KKFRTPSFLK KSKKKEKVES BACU006031/1-583 ---------- --AGQQDP-- ---------- ---------- ---------- ENSBTAP00000011966/1-724 VDTSKDKTES VTSGPMSPEG SPSKSPSKKK KKFRTPSFLK KSKKKEKVES bmy_18384T0/1-458 VDTSKDKTES VTSGPMSPEG SPSKSPSKKK KKFRTPSFLK KSKKKEKVES ENSTTRP00000008063/1-724 VDTSKDKTES VTSGPMSPEG SPSKSPSKKK KKFRTPSFLK KSKKKEKVES