KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:18 2014 Check: 00 .. Name: ENSTTRP00000004103/1-425 Len: 426 Check: 9707 Weight: 1.00 Name: ENSP00000417654/1-424 Len: 426 Check: 1978 Weight: 1.00 Name: ENSBTAP00000011977/1-425 Len: 426 Check: 6727 Weight: 1.00 Name: bmy_09356T0/1-363 Len: 426 Check: 2304 Weight: 1.00 Name: BACU009337/1-322 Len: 426 Check: 4355 Weight: 1.00 // 1 50 ENSTTRP00000004103/1-425 MESNYCGHPV LSSSSAMYTF LLGAIFIALS SSRILLVKYS ANEENKYDYL ENSP00000417654/1-424 MEKQCCSHPV ICSLSTMYTF LLGAIFIALS SSRILLVKYS ANEENKYDYL ENSBTAP00000011977/1-425 -MESNCGHPM LSVSSAMYTF LLGAIFITLS SSRILLVKYS ANEENKYDYL bmy_09356T0/1-363 ---------- ------MYAL P--------- ---------- ------LEVL BACU009337/1-322 ---------- ---------- ---------- ---------- ------MSLL 51 100 ENSTTRP00000004103/1-425 PTTVNVCSEL VKLVFCVLVS FWVL-KKDHQ NRNLRCGSWK EFSNFMKWSI ENSP00000417654/1-424 PTTVNVCSEL VKLVFCVLVS FCVI-KKDHQ SRNLKYASWK EFSDFMKWSI ENSBTAP00000011977/1-425 PTTVNVCSEL VKLVFCALVS FWVLKKEDHQ NRKLRCGSWK EFFNFMKWSI bmy_09356T0/1-363 PRD------- ---------- -----REDHQ NRNLRCGSWK EFSNFMKWSI BACU009337/1-322 PPT------- ---------- -----R---- ---------- -FST--GWRH 101 150 ENSTTRP00000004103/1-425 PAFLYFLDNL IVFYVLSYLQ PXXXXXXXXX XXXXXXXXXX XXXXRHLNWI ENSP00000417654/1-424 PAFLYFLDNL IVFYVLSYLQ PAMAVIFSNF SIITTALLFR IVLKRRLNWI ENSBTAP00000011977/1-425 PAFLYFLDNL IVFYVLSYLQ PAMAVIFSNF SIITTALLFR IVLKRHLNGI bmy_09356T0/1-363 PAFLYFLDNL IVFYVLSYLQ PAMAVIFSNF SIITTALLFR IVLKRHLNWI BACU009337/1-322 P--------- ---------- RAMAVIFSNF SIITTALLFG IVLKRHLNWI 151 200 ENSTTRP00000004103/1-425 QWASLLILFL SIVALTSGTE TSQHNLAGHG FHHDAFFSPS NSCLLFRSEC ENSP00000417654/1-424 QWASLLTLFL SIVALTAGTK TLQHNLAGRG FHHDAFFSPS NSCLLFRSEC ENSBTAP00000011977/1-425 QWASLLILFL SIVALTSGTE TSQHSLAGHG FHHDALFSPS NSCLLFRSEC bmy_09356T0/1-363 QWASLLILFL SIVALTSGTE TSQHNRAGHG FHHDAFFSPS NSCLLFRSEC BACU009337/1-322 QWASLLILFL SIVALTSGTE TSQHNLAGHG FHHDAFFSPS NSCLLFQSEC 201 250 ENSTTRP00000004103/1-425 SGKDNCTAKE WTFSEAQWNT TARVFSHIRL GLGHVLIIVQ CFISSMANIY ENSP00000417654/1-424 PRKDNCTAKE WTFPEAKWNT TARVFSHIRL GMGHVLIIVQ CFISSMANIY ENSBTAP00000011977/1-425 PRKDNCTAKE WTFSEAQWNT TARVFSHIRL GLGHVLIIVQ CFISSMANIY bmy_09356T0/1-363 SRKDNCTAKE WTFSEAQWNT TARVFSHIRL GLGHVLIIVQ CFISSMANIY BACU009337/1-322 SRKDNCTAKE WTFSEAQWNT TARVFSHIRL GLGHVLIIVQ CFISSMANIY 251 300 ENSTTRP00000004103/1-425 NEKILKEGNQ LTESIFVQNS KLYFFGILFN GLTLGLQSSN RDQVKNCGFF ENSP00000417654/1-424 NEKILKEGNQ LTESIFIQNS KLYFFGILFN GLTLGLQRSN RDQIKNCGFF ENSBTAP00000011977/1-425 NEKILKEGNQ LTESIFVQNS KLYFFGVLFN GLTLGLQSGN RDQIKNCGIF bmy_09356T0/1-363 NEKILKEGNQ LTESIFVQNS KLYFFGILFN GLTLGLQSSN RDQVKNCGFF BACU009337/1-322 NEKILKEGNQ LTESIFVQNS KLYFFGILFN GLTLGLQSSN RDQVKNCGFF 301 350 ENSTTRP00000004103/1-425 YGHNAFSVAL IFVTAFQGLS VAFILKFLDN MFHVLMAQVT TVVITTVSVL ENSP00000417654/1-424 YGHSAFSVAL IFVTAFQGLS VAFILKFLDN MFHVLMAQVT TVIITTVSVL ENSBTAP00000011977/1-425 YGHNAFSVAL IFVTAFQGLS VAFILKFLDN MFHVLMAQVT TVVITTVSVL bmy_09356T0/1-363 YGHNAFSVAL IFVTAFQGLS VAFILKFLDN MFHVLMAQVT TVIITTVSVL BACU009337/1-322 YGHNAFSVAL IFVTAFQGLS VAFILKFLDN MFHVLMAQVT TVIITTVSVL 351 400 ENSTTRP00000004103/1-425 VFDFRPSLEF FIEAPSVLLS IFIYNASKPQ GLEYAPRQER IRDLSGSLWE ENSP00000417654/1-424 VFDFRPSLEF FLEAPSVLLS IFIYNASKPQ VPEYAPRQER IRDLSGNLWE ENSBTAP00000011977/1-425 VFDFRPSLEF FLEAPSVLLS ILIYNASNPQ GVENVPRKER IRDLSGTLWE bmy_09356T0/1-363 VFDFRPSLEF FLEAPSVLLS IFIYNASKPQ GLEYAPRQER IRDLSGSLWE BACU009337/1-322 VFDFRPSLEF FLEAPSVLLS IFIYNASKPQ GLEYAPRQER IRDLSGSLWE 401 450 ENSTTRP00000004103/1-425 RSSGDGEELE RLTKPKSDIE SDEDAF ENSP00000417654/1-424 RSSGDGEELE RLTKPKSD-E SDEDTF ENSBTAP00000011977/1-425 RSSGDGEELE RLTKPKSDIE SDEDTF bmy_09356T0/1-363 RSSGDGEELE RLTKPKSDIE SDEDTF BACU009337/1-322 RSSGDGEELE RLTKPKSDIE SDEDTF