KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:19 2014 Check: 00 .. Name: ENSP00000261921/1-574 Len: 615 Check: 3141 Weight: 1.00 Name: ENSBTAP00000011978/1-592 Len: 615 Check: 5100 Weight: 1.00 Name: ENSTTRP00000000054/1-584 Len: 615 Check: 7358 Weight: 1.00 Name: bmy_11982T0/1-600 Len: 615 Check: 4243 Weight: 1.00 Name: BACU017926/1-516 Len: 615 Check: 2558 Weight: 1.00 // 1 50 ENSP00000261921/1-574 MALARGSRQL GALVWGACLC VLVHGQQAQP GQGSDPARWR QLIQWENNGQ ENSBTAP00000011978/1-592 MALALTGWQ- --LVWGACVC VLVHGQQAPP GQGSDPGRWR QLIQWENNGQ ENSTTRP00000000054/1-584 MALAPAGWQL GALVWGACVC VLVHGQQAQP GQGSDQGRWR QLIQWENNGQ bmy_11982T0/1-600 MALAPAGWQL GALVWGACVC VLVHGQQTHP GQGSDQGRWR QLIQWENNGQ BACU017926/1-516 MALAPASWQL GALVWGACVC VLVHGQQAHP GQGSDQGRWR QLIQWENNGQ 51 100 ENSP00000261921/1-574 VYSLLNSGSE YVPAGPQRSE SSSRVLLAGA PQAQQRRSHG SPRRRQAPSL ENSBTAP00000011978/1-592 VYSLLNSGAE YVPPGPQGSE ANSRVLLAGA PQAPPRRSQG GLRRRQAPSL ENSTTRP00000000054/1-584 VYSLLNSGSE YLPAGTQRSE SNSRVLLAGA PQAPHRRSHG GLRRRQAPSL bmy_11982T0/1-600 VYSLLNSGSE YLPAGTQPSE GNSRVLLAGA PQAPHRRSHG GLRRRQAPSL BACU017926/1-516 VYSLLNSGSE YVPAGTQPSE GNSRVLLAGA PQAPHRRSHG GLRRRQAPSL 101 150 ENSP00000261921/1-574 PLPGRVGSDT VRGQARHPFG FGQVPDNWRE VAVGDSTGMA RARTSVSQQR ENSBTAP00000011978/1-592 PLPGRVGSDT VRGQARHPFG FGQVPDNWRE VAVGDSTGMA RARTSVSQQR ENSTTRP00000000054/1-584 PLPGRIGSDT VRGQARHPFG FGQVPDNWRE VAVGDSTAMA RARTSVSQQR bmy_11982T0/1-600 PLPGRIGSDT VRGQARHPFG FGQVPDNWRE VAVGDSTAMA RARTSVSQQR BACU017926/1-516 PLPGRIGSDT VRGQARHPFG FGQVPDNWRE VAVGDSTAMA RARTSVSQQR 151 200 ENSP00000261921/1-574 HGGSAS---- SVSASAFAST YRQQPSYP-Q QFPYPQAPFV SQYENYDPAS ENSBTAP00000011978/1-592 HGGSAS--SV SASASAFAST YRQPSSFPQQ QFPYPQAPFV SQYETYDPST ENSTTRP00000000054/1-584 HGGSASSASA SASASAFATT YRQPSSFP-Q QFPYPQAPFV SQYETYDPAS bmy_11982T0/1-600 HGGSAS---- SASASAFATT YRQPSSFP-Q QFPYPQAPFV SQYETYDPAS BACU017926/1-516 HGGSAS---- SVSASAFATT YRQPSSFP-Q QFPYPQAPFV SQYETYDPAS 201 250 ENSP00000261921/1-574 RTYDQGFVYY RPAGGGVGAG AAAVASAGVI YPYQPRARYE EY--GGGEEL ENSBTAP00000011978/1-592 RTYDQGYVYY RSASGGLGA- -AAVASAGVV YPFQPRARYE EYGGGGGEEQ ENSTTRP00000000054/1-584 RTYDQGYVYY RGVGGGLGAG TAAVAAAGVI YPFQPRARYE EY--GGGEEQ bmy_11982T0/1-600 RTYDQGYVYY RSVGGGLGAG TAAVASAGVI YPFQPRARYE EY--GGGEEQ BACU017926/1-516 RTYDQGYVYY RGTGGGLGAG TAAVASAGVI YPFQPRARYE D--------- 251 300 ENSP00000261921/1-574 PEYPPQGFYP -APERPYVP- ----PPPPPP DGLDRRYSHS LYSE------ ENSBTAP00000011978/1-592 PEYPPQGFYP AAPERPYAP- -------QPA DGLDRRYSHS LYHE------ ENSTTRP00000000054/1-584 PEYPPQGFYP -APERPYAP- --QPPQPQPA DGLDRRYSHS LYNE------ bmy_11982T0/1-600 PEYPPQGFYP -APERPYAPQ PQQPPQPQPA DGLDRRYSHS LYNEGTAGLE BACU017926/1-516 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000261921/1-574 --GTPGFEQA YPDPGPEAAQ AHG------- ----GDPRLG WYPPYANPPP ENSBTAP00000011978/1-592 --GTAGLEPA YPDPGPDAAQ PNGGGGGGTY GGGGGDPRLG WYPPYGNMPP ENSTTRP00000000054/1-584 --GTAGLEQA YPDPAPDAAQ SNG------- GAYGGDPRLG WYPPYGNMPP bmy_11982T0/1-600 QAGTAGLEQA YPDPGPDAAQ PNG------- GAYGGDPRLG WYPPYGNMPP BACU017926/1-516 ---------- ---------- ---------- -----DPRLG WYPPYGNMPP 351 400 ENSP00000261921/1-574 EAYGPP---- -----RALEP PYLPVRSSDT PPPGGERNGA QQGRLSVGSV ENSBTAP00000011978/1-592 EAYSPPRVVE PQPPFRVLEP PYLPVRSSDA PPPGSERNGA QQGRLSVGSV ENSTTRP00000000054/1-584 EAYSPP---- -----RVVEP PYLPVRSSDA PPPGSERNGA QQGRLSVGSV bmy_11982T0/1-600 EAYSPPRAVE PQPPFRVLEP PYLPVRSSDA PPPALERNGA QQGRLSVGSV BACU017926/1-516 EAYSPPRAVE PQPPFRVLEP PYLPVRSSDA PPPASERRGA QQGRLSVGSV 401 450 ENSP00000261921/1-574 YRPNQNGRGL PDLVPDPNYV QASTYVQRAH LYSLRCAAEE KCLASTAYAP ENSBTAP00000011978/1-592 YRPNQNGRGL PDLVPDPNYV QASTYVQRAH LYSLRCAAEE KCLASTAYAP ENSTTRP00000000054/1-584 YRPSQNGRGL PDLVPDPNYV QASTYVQRAH LYSLRCAAEE KCLASTAYAP bmy_11982T0/1-600 YRPSQNGRGL PDLVPDPNYV QASTYVQRAH LYSLRCAAEE KCLASTAYAP BACU017926/1-516 YRPSQNGRGL PDLVPDPNYV QASTYVQRAH LYSLRCAAEE KCLASTAYAP 451 500 ENSP00000261921/1-574 EATDYDVRVL LRFPQRVKNQ GTADFLPNRP RHTWEWHSCH QHYHSMDEFS ENSBTAP00000011978/1-592 EATDYDVRVL LRFPQRVKNQ GTADFLPNRP RHTWEWHSCH QHYHSMDEFS ENSTTRP00000000054/1-584 EVTDYDVRVL LRFPQRVKNQ GTADFLPNRP RHTWEWHSCH QHYHSMDEFS bmy_11982T0/1-600 EATDYDVRVL LRFPQRVKNQ GTADFLPNRP RHTWEWHSCH QHYHSMDEFS BACU017926/1-516 EATDYDVRVL LRFPQRVKNQ GTADFLPNRP RHTWEWHSCH QHYHSMDEFS 501 550 ENSP00000261921/1-574 HYDLLDAATG KKVAEGHKAS FCLEDSTCDF GNLKRYACTS HTQGLSPGCY ENSBTAP00000011978/1-592 HYDLLDAATG KKVAEGHKAS FCLEDSTCDF GNLKRYACTS HTQGLSPGCY ENSTTRP00000000054/1-584 HYDLLDAVTG KKVAEGHKAS FCLEDSTCDF GNLKRYACTS HTQGLSPGCY bmy_11982T0/1-600 HYDLLDAVTG KKVAEGHKAS FCLEDSTCDF GNLKRYACTS HTQGLSPGCY BACU017926/1-516 HYDLLDAVTG KKVAEGHKAS FCLEDSTCDF GNLKRYACTS HTQGLSPGCY 551 600 ENSP00000261921/1-574 DTYNADIDCQ WIDITDVQPG NYILKVHVNP KYIVLESDFT NNVVRCNIHY ENSBTAP00000011978/1-592 DTYNADIDCQ WIDITDVQPG NYILKVHVNP KYIVLESDFT NNVVRCNIHY ENSTTRP00000000054/1-584 DTYNADIDCQ WIDITDVQPG NYILKVHVNP KYIVLESDFT NNVVRCNIHY bmy_11982T0/1-600 DTYNADIDCQ WIDITDVQPG NYILKVHVNP KYIVLESDFT NNVVRCNIHY BACU017926/1-516 DTYNADIDCQ WIDITDVQPG NYILKVHVNP KYIVLESDFT NNVVRCNIHY 601 650 ENSP00000261921/1-574 TGRYVSATNC KIVQS ENSBTAP00000011978/1-592 TGRYVSTTNC KIVQS ENSTTRP00000000054/1-584 TGRYVSTTNC KIVQS bmy_11982T0/1-600 TGRYVSTTNC KIVQS BACU017926/1-516 TGRYVSTTNC KIVQS