KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:20 2014 Check: 00 .. Name: ENSBTAP00000011991/1-1327 Len: 1337 Check: 757 Weight: 1.00 Name: ENSP00000310842/1-1328 Len: 1337 Check: 9674 Weight: 1.00 Name: ENSTTRP00000008389/1-1319 Len: 1337 Check: 4917 Weight: 1.00 Name: bmy_15706T0/1-780 Len: 1337 Check: 5072 Weight: 1.00 Name: BACU016092/1-1325 Len: 1337 Check: 4027 Weight: 1.00 // 1 50 ENSBTAP00000011991/1-1327 MDQKILSLAA EKTADGLQEF LQILKEDDLT DLLQNQAVRG KTAGALLKAI ENSP00000310842/1-1328 MDQKILSLAA EKTADKLQEF LQTLREGDLT NLLQNQAVKG KVAGALLRAI ENSTTRP00000008389/1-1319 MDQKILSLAA EKTADRLQKF LQTLKEDDLA NLLQNQAVKG KAAGALLRAI bmy_15706T0/1-780 ---------- ---------- ---------- ---------- ---------- BACU016092/1-1325 MDQKILSLAA EKTADRLQKF LQTLKEDDLA NLLQNQAVKG KAAGALLRAI 51 100 ENSBTAP00000011991/1-1327 FKGLPCSEEA GALKRLKIYS CCIQLLESGD LQKEVASEIT GLLMLEVHRF ENSP00000310842/1-1328 FKGSPCSEEA GTLRRRKIYT CCIQLVESGD LQKEIASEII GLLMLEAHHF ENSTTRP00000008389/1-1319 FKGFPCSEEA GALRRLKIYS CCVQLLESGD LQKEVASEII GLLMLEVHNF bmy_15706T0/1-780 ---------- ---------- ---------- ---------- ---------- BACU016092/1-1325 FKGFPCSEEA GALRRLKIYS CCVQLLESGD LQKEVASEII GLLMLEVHNF 101 150 ENSBTAP00000011991/1-1327 PGQLLVELAN EFVSAINEGK LTNGKSLELL PIILTALGTK KENLTYGKGE ENSP00000310842/1-1328 PGPLLVELAN EFISAVREGS LVNGKSLELL PIILTALATK KENLAYGKGV ENSTTRP00000008389/1-1319 PGALLVELAS EFVDAVKQGN LTNGKSLELL PIIFTALATK KENLAYGKGE bmy_15706T0/1-780 ---------- ---------- ---------- ---------- ---------- BACU016092/1-1325 PGALLVELAN EFVDAIKEGN LTNGKSLELL PIIFTALATK KEDLAYGKGE 151 200 ENSBTAP00000011991/1-1327 LSGEEC-KKQ LINTLCSGRW DHQYVIQLTS MFKAVPLTTE EVEFVVEKVL ENSP00000310842/1-1328 LSGEEC-KKQ LINTLCSGRW DQQYVIQLTS MFKDVPLTAE EVEFVVEKAL ENSTTRP00000008389/1-1319 LSGEEC-KKQ LINTLCSGRW DHQYVIQLTS MFKDVPLTAE EVEIVVEKVL bmy_15706T0/1-780 ---------- ---------- ---------- ---------- ---------- BACU016092/1-1325 LSGEECKKKQ LINTLCSGRW DHQYVIQLTS MFKDVPLTAE EMEIVVEKVL 201 250 ENSBTAP00000011991/1-1327 KVFSKLNLQE IPPLVYQLLV LSSKGSRKRV LVGIIAFFNK LDQQHNEEQS ENSP00000310842/1-1328 SMFSKMNLQE IPPLVYQLLV LSSKGSRKSV LEGIIAFFSA LDKQHNEEQS ENSTTRP00000008389/1-1319 TMFSKLNLQE IPPLVYQLLV LSSKGSRKKV LEGIIAFFNK LDTQHSEEQS bmy_15706T0/1-780 ---------- ---------- ---------- ---------- ---------- BACU016092/1-1325 TMFSKLNLQE IPPLVYQLLV LSSKGSRKRV LEGIIAFFNK LDKQHSEEQS 251 300 ENSBTAP00000011991/1-1327 GDEYLDLITV PLDELRHVEG TIILHIVFAI KLDFELGREL LRHLKATQQG ENSP00000310842/1-1328 GDELLDVVTV PSGELRHVEG TIILHIVFAI KLDYELGREL VKHLKVGQQG ENSTTRP00000008389/1-1319 GDELLDFVTV PSGELRHVEG TIILHIVFAI KLDCELGREL LKLLKXXXXX bmy_15706T0/1-780 ---------- ---------- ---------- ---------- ---------- BACU016092/1-1325 GDELLDFVTV PSGELRHVEG TIILHIVFAI KLDCELGREL LKLLKAGQQG 301 350 ENSBTAP00000011991/1-1327 DFSS-ICPFS IALLLSVTRI QRFEEQVFDF LKSSVIKNFK DLQLLQGSKY ENSP00000310842/1-1328 DSNNNLSPFS IALLLSVTRI QRFQDQVLDL LKTSVVKSFK DLQLLQGSKF ENSTTRP00000008389/1-1319 -----XXXXX XXXXXXXXXX XXXXXXXXXX XKSLVIKSFK DLQLLQGSKF bmy_15706T0/1-780 ---------- ---------- ---------- ---------- ---------- BACU016092/1-1325 DFSSNICPFS IALFLSVTRI QRYEEQVFDL LKSLVIKSFK DLQLLQGSKF 351 400 ENSBTAP00000011991/1-1327 IQSLFPNECC ISTMILEVVN NSVHSWDHVT QGLVEFGFIL MDSYGPKKIL ENSP00000310842/1-1328 LQNLVPHRSY VSTMILEVVK NSVHSWDHVT QGLVELGFIL MDSYGPKKVL ENSTTRP00000008389/1-1319 LQDLVPHRCC VSTMILEVVK NSVHSWDHVT QGLVELGFIL MDSYGPKKIL bmy_15706T0/1-780 ---------- ---------- ---------- ---------- ---------- BACU016092/1-1325 LQNLVPHRCC VSTMILEVVK NSVHSWDHIT QGLVELGFIL MDSYGPKKIL 401 450 ENSBTAP00000011991/1-1327 DGKTAETSSG LSRMPNQHAC KLGANILLET FKIHEMIRQE ILEQVLNRVV ENSP00000310842/1-1328 DGKTIETSPS LSRMPNQHAC KLGANILLET FKIHEMIRQE ILEQVLNRVV ENSTTRP00000008389/1-1319 DGKTIEASSG LSRMPNQHAC KLGANILLET FKIHEMIRQE ILEQVLNRVV bmy_15706T0/1-780 ---------- ---------- ---------- ---------- ---------- BACU016092/1-1325 DGKTIEASSG LSRMPNQHAC KLGANILLET FKIHEMIRQE ILEQVLNRVV 451 500 ENSBTAP00000011991/1-1327 TRASSPINHF LDLLSDIIKY SPLVLQSCSS KVTETFDYLS FLPVQTVQGL ENSP00000310842/1-1328 TRASSPISHF LDLLSNIVMY APLVLQSCSS KVTEAFDYLS FLPLQTVQRL ENSTTRP00000008389/1-1319 TRGSSPITHF IDLLSDIIMY SPLVLQSCSS KVTETFDYLS FLPLQTVQGL bmy_15706T0/1-780 ---------- --------MY SPLVLQSCSS KVTETFDYLS FLPLQTVQGL BACU016092/1-1325 TRGSSPITHF IDLLSNIIMY SPLVLQSCSS KVTETFDYLS FLPLQTVQGL 501 550 ENSBTAP00000011991/1-1327 LKAVQPLLKV SMSIRDSLIL VLRKAMFASQ LDARKSAVAG FLLLLKNFKV ENSP00000310842/1-1328 LKAVQPLLKV SMSMRDCLIL VLRKAMFANQ LDARKSAVAG FLLLLKNFKV ENSTTRP00000008389/1-1319 MKAVQPLLKV SLSIRDSLIL VLRKAMFARQ LDARKSAVAG FLLLLKNFKV bmy_15706T0/1-780 LKAVQPLLKV SLSIRDSLIL VLRKAMFASQ LDARKSAVAG FLLLLKNFKV BACU016092/1-1325 LKAVQPLLKV SLSIRDSLIL VLRKAMFASQ LDARKSAVAG FLLLLKNFKV 551 600 ENSBTAP00000011991/1-1327 LGSLSSSQCS QSIGVSQVHV DIHSRYNSVA NETFCLEIMD SLKRCLGQQA ENSP00000310842/1-1328 LGSLSSSQCS QSLSVSQVHV DVHSHYNSVA NETFCLEIMD SLRRCLSQQA ENSTTRP00000008389/1-1319 LGSLSSSQCS QSIGISQVHV DVHSRYNSVA NETFCLEIMD SLRRCLGQQA bmy_15706T0/1-780 LGSLSSSQCS QSIGISQVHV DVHSRYNSVA NETFCLEIMD SLRRCLGQQA BACU016092/1-1325 LGSLSSSQCS QSIGISQVHV DVHSRYNSVA NETFCLEIMD SLRRCLGQQA 601 650 ENSBTAP00000011991/1-1327 DVRLMLYEGF YDVLRRNSQL ANSVMQTLLS QLKQFYEPEP DVLPPLKLEA ENSP00000310842/1-1328 DVRLMLYEGF YDVLRRNSQL ANSVMQTLLS QLKQFYEPKP DLLPPLKLEA ENSTTRP00000008389/1-1319 DVRLMLYEXX XXXXXXXXXX XXXXXXXXXX XLKQFYEPEP DMLPPLKLEA bmy_15706T0/1-780 DVRLMLYEGF YDVLRRNSQL ANSIMQTLLS QLKQXYEPEP DMLPPLKLEA BACU016092/1-1325 DVRLMLYEGF YDVLRRNSQL ANSIMQTLLS QLKQVYEPEP DMLPPLKLEA 651 700 ENSBTAP00000011991/1-1327 CILTQGDQVF LQEPLDYLLC CIQHCLAWYK SRVVPLQQ-- EEEEEEEGFY ENSP00000310842/1-1328 CILTQGDKIS LQEPLDYLLC CIQHCLAWYK NTVIPLQQGE EEEEEEEAFY ENSTTRP00000008389/1-1319 CILTQGDQIS LQEPLDCLLC CIQHCLAWYK SRVMPLQQ-K EEEEEEEGFY bmy_15706T0/1-780 CILTQGDQIS LQEPLDCLLC CIQHCLAWYK SRVMPLQQ-E EEEEEEEGFY BACU016092/1-1325 CILTQGDQIS LQEPLDCLLC CIQHCLAWYK SRVMLLQQ-E EEEEEEEGFY 701 750 ENSBTAP00000011991/1-1327 QYLDDMLESI TNRMIKSELE DFELDKSADF SQSTGIGIKN NICASLVMGI ENSP00000310842/1-1328 EDLDDILESI TNRMIKSELE DFELDKSADF SQSTSIGIKN NICAFLVMGV ENSTTRP00000008389/1-1319 QDLDDMLESI TSRMIKSELE DFELDKSADF SQSTGIGIKN NICAFLVMGV bmy_15706T0/1-780 QDLDDMLESI TSRMIKSELE DFELDKSSDF SQSTGIGIKN NICASLVMGV BACU016092/1-1325 QDLDDMLESI TSRMIKSELE DFELDKSSDF SQSTGIGIKN NICASLVMGV 751 800 ENSBTAP00000011991/1-1327 CEVLIEYNFF ISNFSKTKFE TILSLFMCYK KLSDILNEKS GKGKTKMANR ENSP00000310842/1-1328 CEVLIEYNFS ISSFSKNRFE DILSLFMCYK KLSDILNEKA GKAKTKMANK ENSTTRP00000008389/1-1319 CEVLIEYNFS VSNFSKNKFE DVLSLFMCYK ELSDILNEKA GKGKTKMANK bmy_15706T0/1-780 CEVLIEYNFS VSNFSKNKFE EVLSLFMCYK ELSDILNEKA GKGKTKMANK BACU016092/1-1325 CEVLIEYNFS ISNFSKNKFE EVLSLFMCYK ELSDTLNEKA GKGKTKMANK 801 850 ENSBTAP00000011991/1-1327 PTDSFLSMKF VSDLLTALFR DSTQSHEESL SVLRSSNEFM RYAVNVALMK ENSP00000310842/1-1328 TSDSLLSMKF VSSLLTALFR DSIQSHQESL SVLRSSNEFM RYAVNVALQK ENSTTRP00000008389/1-1319 TNDSFLSMKF VSDLLTALFR DSTQSHEESL SVLRSSNEFM RYAVSVALQK bmy_15706T0/1-780 TNDSFLSMKF VSDLLTALFR DSTQSHEESL SVLRSSNEFM RYAVSVALQK BACU016092/1-1325 TNDSFLSMKF VSDLLTALFR DSTQSHEESL SVLRSSNEFM RYAVSVALQK 851 900 ENSBTAP00000011991/1-1327 VQQLKETGHV SGPDGQNPEK VFQNLCDITR VLLWRYTSIP TSVEESGKRE ENSP00000310842/1-1328 VQQLKETGHV SGPDGQNPEK IFQNLCDITR VLLWRYTSIP TSVEESGKKE ENSTTRP00000008389/1-1319 VQQLKEMGHV SGPDGKNPEK VFQNLCDITR VLLWRYTSIP TSVEESGKKE bmy_15706T0/1-780 VQQLKETGH- ---------- ---------- ---------- ---------- BACU016092/1-1325 VQQLKEMGHV SGPDGQNPEK VFQNLCDITR VLLWRYTSIP TSVEESGKKE 901 950 ENSBTAP00000011991/1-1327 KGKNISLLCL EGIQKILSAV QQFYQPKCHQ FLKALDATDK E---EEEEEV ENSP00000310842/1-1328 KGKSISLLCL EGLQKIFSAV QQFYQPKIQQ FLRALDVTDK EGEEREDADV ENSTTRP00000008389/1-1319 KGKNISLLCL EGLQKIFSVV QQFYQPKIHQ FLRALDATDK E----EEVEV bmy_15706T0/1-780 ---------- -GLQKIFSAV QQFYQPKIHQ FLRALDATDE E----EEVEV BACU016092/1-1325 KGKNISLLCL EGLQKIFSAV QQFYQPKIHQ FLRALDATDE E----EEVEV 951 1000 ENSBTAP00000011991/1-1327 SVSERAAFQI RQFQRSLLNL LSSQEEDFKS KEALLLATVL TSLSKLLKPI ENSP00000310842/1-1328 SVTQRTAFQI RQFQRSLLNL LSSQEEDFNS KEALLLVTVL TSLSKLLEPS ENSTTRP00000008389/1-1319 SVTQRAAFQI RQFQRSLLNI LSSQEEDFNS KEALLLVTVL SNLSKLLEPS bmy_15706T0/1-780 SVTQRAAFQI RQFQRSLLNI LSSQEEDFNS KEALLLVTVL SNLSKLLEPS BACU016092/1-1325 SVTQRAAFQI RQFQRSLLNI LSSQEEDFNS KEALLLVTVL SNLSKLLEPS 1001 1050 ENSBTAP00000011991/1-1327 SAEFVQMLSW TSKICTENSC EDASFCKGML SLLFNLHVSC KSPVGLLRDL ENSP00000310842/1-1328 SPQFVQMLSW TSKICKENSR EDALFCKSLM NLLFSLHVSY KSPVILLRDL ENSTTRP00000008389/1-1319 STQFVQMLSW TTKICKENSW EDASFCKGLM NLLFSLHVLC KSPVTLLRDL bmy_15706T0/1-780 STQFVQMLSW TTKICKENSW EDASFCKGLM NLLFSLHVLC KSPVTLLRDL BACU016092/1-1325 STQFVQMLSW TTKICKENSW EDASFCKGLM NLLFSLHVLC KSPVTLLRDL 1051 1100 ENSBTAP00000011991/1-1327 SQDIHGLLGD IDEDVEVEKT NNFALVNLKT AAPTVCLLVL SKAEKVLEEV ENSP00000310842/1-1328 SQDIHGHLGD IDQDVEVEKT NHFAIVNLRT AAPTVCLLVL SQAEKVLEEV ENSTTRP00000008389/1-1319 SQDIHGHLGD IDQDVEVEKT NHFAVVNLRT AAPTVCLLLL SQAEKVLEEV bmy_15706T0/1-780 SQDIHGHIGD IDEDVEVEKT NHFAMVNLRT AAPTVCLLLL SQAEKVLEEV BACU016092/1-1325 SQDIHGHIGD IDQDVEVEKT NHFAMVNLRT AAPTVCLLLL SQAEKVLEEV 1101 1150 ENSBTAP00000011991/1-1327 DWLITKLKGQ ANQKIIPEEA SSQAALTNHP MEKTTIIQLG TLLTFFHELV ENSP00000310842/1-1328 DWLITKLKGQ VSQETLSEEA SSQATLPNQP VEKAIIMQLG TLLTFFHELV ENSTTRP00000008389/1-1319 DWLITKLKGQ VSQEIIPEEA SSQATLPNHP IEKAIIIQLG TLLTFFHELV bmy_15706T0/1-780 DWLITKLKGQ VSQEIIPEEA SSQATLPNHP IEKAIIIQLG TLLTFFHELV BACU016092/1-1325 DWLITKLKGQ VSQEIIPEEA SSQAALPNHP IEKAVIIQLG TLLTFFHELV 1151 1200 ENSBTAP00000011991/1-1327 QTALPSGSCV DTLLKDLGKM YTTLTALVKY YLQVYQPSTG IPKNMEKLVK ENSP00000310842/1-1328 QTALPSGSCV DTLLKDLCKM YTTLTALVRY YLQVCQSSGG IPKNMEKLVK ENSTTRP00000008389/1-1319 QTALPSGSCV DTLLKDLCKM YTILTALVRY YLQVCQHSRG IPKNMEKLVK bmy_15706T0/1-780 QTALPSGSCV DTLLKDLCKM YTILTALVRY YLQVCQHSRG IPKNMEKLVK BACU016092/1-1325 QTALPSGSCV DTLLKDLCKM YTILTALVRY YLQVCQHSRG IPKNMEKLVK 1201 1250 ENSBTAP00000011991/1-1327 LSGSHLTPLC YSFISYVQNK HSRSLKCTGE --KEKTAAGP TAIARALRET ENSP00000310842/1-1328 LSGSHLTPLC YSFISYVQNK -SKSLNYTGE -KKEKPAAVA TAMARVLRET ENSTTRP00000008389/1-1319 LSGSHLTPLC YSFISYIQNK KSKSLKHTGE KKKEKTAAGP TAMARALRET bmy_15706T0/1-780 LSGSHLTPLC YSFISYIQ-- ---------- ---------- ---ARALRET BACU016092/1-1325 LSGSHLTPLC YSFISYIQNK NSKSLKHTGE KKKEKTTAGP TAMARALRET 1251 1300 ENSBTAP00000011991/1-1327 KPIPNLIFAI EQYEKFLIHL SKRSKVNLMK HIKLSTSRDF KIKGNILDVV ENSP00000310842/1-1328 KPIPNLIFAI EQYEKFLIHL SKKSKVNLMQ HMKLSTSRDF KIKGNILDMV ENSTTRP00000008389/1-1319 KPIPNLIFAI EQYEKFLIHL SKRSKVNLMQ HIKLSTSRDF KIKGNILDMV bmy_15706T0/1-780 KPIPNLIFAI EQYEKFLIHL SKRSKVNLMQ HIKLSTSRDF KIKGNILDMV BACU016092/1-1325 KPIPNLIFAI EQYEKFLIHL SKRSKVNLMQ HIKLSTSRDF KIKGNILDMV 1301 1350 ENSBTAP00000011991/1-1327 LRQE-EDENE EGTASEHEGQ NKEPAKKKRK KEMKCLS ENSP00000310842/1-1328 LREDGEDENE EGTASEHGGQ NKEPAKKKRK K------ ENSTTRP00000008389/1-1319 LQED-EDEDE EGTASEHEGQ NKEPAKKKRK K------ bmy_15706T0/1-780 LQED-EDEDE EGTASEHEGQ NKEPAKKKRK K------ BACU016092/1-1325 LQED-EDEDE EGTASEHEGQ NKEPAKKKRK K------