KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:45:22 2014 Check: 00 ..
Name: ENSTTRP00000008404/1-1229 Len: 1292 Check: 6323 Weight: 1.00
Name: BACU019509/1-1222 Len: 1292 Check: 6855 Weight: 1.00
Name: ENSP00000268124/1-1239 Len: 1292 Check: 5861 Weight: 1.00
Name: bmy_15707T0/1-1124 Len: 1292 Check: 9812 Weight: 1.00
Name: ENSBTAP00000011993/1-1217 Len: 1292 Check: 6526 Weight: 1.00
//
1 50
ENSTTRP00000008404/1-1229 MSRLLWRKVA GATVGPGPVP APGRWVSSSA SGPVPSDG-- -------QPQ
BACU019509/1-1222 MSRLLWRKVA GATVGSGPVP APGRWVSSSA SVPVPSDG-- ----------
ENSP00000268124/1-1239 MSRLLWRKVA GATVGPGPVP APGRWVSSSV PASDPSDGQR RRQQQQQQQQ
bmy_15707T0/1-1124 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000011993/1-1217 MSRLLWRKVA GATVGPGPVP APRRWVSSSA SDPVPSDG-- ----------
51 100
ENSTTRP00000008404/1-1229 PPQPSPPPRP VPSSEGGQLR HNPLHIQMLS RGLHEQIFGH GGEMPGEAAV
BACU019509/1-1222 --QPQPQPPP VPSSEGGQLR HNPLHIQMLS RGLHEQIFGH GGEMPGEAAV
ENSP00000268124/1-1239 QQQQQPQQPQ VLSSEGGQLR HNPLDIQMLS RGLHEQIFGQ GGEMPGEAAV
bmy_15707T0/1-1124 ---------- ---------- ---------- ---------- ---MPGEAAV
ENSBTAP00000011993/1-1217 ----PPSPQP VPSSVGGQLR HNPLHIQMLS RGLHEQIFGP GGERPDEAAV
101 150
ENSTTRP00000008404/1-1229 RRSVEHLQKH GLWGQPAAPL PDVELRLPPL YGGSLDQHFR LLAQKQSLPY
BACU019509/1-1222 RRSVEHLQKH GLWGQPAAPL PDVELRLPPL YGGSLDQHFR LLAQKQSLPY
ENSP00000268124/1-1239 RRSVEHLQKH GLWGQPAVPL PDVELRLPPL YGDNLDQHFR LLAQKQSLPY
bmy_15707T0/1-1124 RRSVEHLQKH GLWGQPAAPL PDVELRLPPL YGGSLDQHFR LLAQKQSLPY
ENSBTAP00000011993/1-1217 RRSVEHLQKH GLWGQPAPPL PDVELRLPPL LGGSLDQHFR ILAQKQSLPY
151 200
ENSTTRP00000008404/1-1229 LEAANLLLQA QLAPRPPSWA WAEGWTRYGP AGEAEPVAIP EERALVFDVE
BACU019509/1-1222 LEAANLLLQA QLAPRPPSWA WAEGWTRYGP AGEAEPVAIP EERALVFDVE
ENSP00000268124/1-1239 LEAANLLLQA QLPPKPPAWA WAEGWTRYGP EGEAVPVAIP EERALVFDVE
bmy_15707T0/1-1124 LEAANLLLQA QLAPRPPSWA WAEGWTRYS- ---------- ----------
ENSBTAP00000011993/1-1217 LEAANSLLQA QLPPRPPSWA WAEGWTRYGP AGEAEPVAIP EERALVFDVE
201 250
ENSTTRP00000008404/1-1229 VCLAEGTCPT LAVAISPSAW YSWCSRRLVE ERYSWTSQLS PADLIPLEVP
BACU019509/1-1222 VCLAEGTCPT LAVAISPSAW YSWCSRRLVE ERYSWTSQLS PADLIPLEVP
ENSP00000268124/1-1239 VCLAEGTCPT LAVAISPSAW YSWCSQRLVE ERYSWTSQLS PADLIPLEVP
bmy_15707T0/1-1124 ---------- ---------- --WCSRRLVE ERYSWTSQLS PADLIPLEVP
ENSBTAP00000011993/1-1217 VCLAEGTCPT LAVAISPSAW YSWCSRRLVE ERYSWTSQLS PADLIPLEVP
251 300
ENSTTRP00000008404/1-1229 ASAGGPTQRD WQEQLVVGHN VCFDRAHIRE QYLIQGSHMR FLDTMSMHMA
BACU019509/1-1222 ASAGGPTQRD WQEQLVVGHN VSFDRAHVRE QYLIRGSRMR FLDTMSMHMA
ENSP00000268124/1-1239 TGASSPTQRD WQEQLVVGHN VSFDRAHIRE QYLIQGSRMR FLDTMSMHMA
bmy_15707T0/1-1124 ASAGGPTQRD WQEQLVVGHN VSFDRAHVRE QYLIRGSRMR FLDTMSMHMA
ENSBTAP00000011993/1-1217 GSAASPAQRD RQERLVVGHN VSFDRAHIRE QYLIQGSHMR FLDTMSMHMA
301 350
ENSTTRP00000008404/1-1229 ISGLSSFQRS LWMAAKQGKR KARHPTQRGQ KSQSKA-NGP AISSWDWLDI
BACU019509/1-1222 ISGLSSFQRS LWMAAKQGKR KARHPTQRGQ KSQSKA-NGP AISSWDWLDI
ENSP00000268124/1-1239 ISGLSSFQRS LWIAAKQGKH KVQPPTKQGQ KSQRKARRGP AISSWDWLDI
bmy_15707T0/1-1124 ISGLSSFQRS LWMAAKQGKH KARHPTQRGQ KSQSKA-NGP AISSWDWLDI
ENSBTAP00000011993/1-1217 ISGLSSFQRS LWMAAKQGKH KARPPTQRGQ KSQSKA-NGP PISSWDWLDI
351 400
ENSTTRP00000008404/1-1229 SSVNNLADVH SLYVGGPRLE KEPRELFVKG SMKDIRENFQ DLMQYCAQDV
BACU019509/1-1222 SSVNNLADVH SLYVGGPHLE KEPRELFVKG SMKDIRENFQ DLMQYCAQDV
ENSP00000268124/1-1239 SSVNSLAEVH RLYVGGPPLE KEPRELFVKG TMKDIRENFQ DLMQYCAQDV
bmy_15707T0/1-1124 SSVNNLADVH SLYVGGPRLE KEPRELFVKG SMKDIRENFQ DLMQYCAQDV
ENSBTAP00000011993/1-1217 SSVNNLADVH GLYVGGPRLE KEPRELFVKG NMKDIRENFQ DLMQYCAQDA
401 450
ENSTTRP00000008404/1-1229 WATYEVFQQQ LPLFL--ERC PHPVTLAGML EMGVSYLPVN QNWERYLAEA
BACU019509/1-1222 WATYEVFQQQ LPPWCLSSRC PHPVTLAGML EMGVSYLPVN QNWERYLAEA
ENSP00000268124/1-1239 WATHEVFQQQ LPLFL--ERC PHPVTLAGML EMGVSYLPVN QNWERYLAEA
bmy_15707T0/1-1124 WATYEVFQQQ LPLFL--ERC PHPVTLAGML EMGVSYLPVN QNWERYLAEA
ENSBTAP00000011993/1-1217 WATYEVFQQQ LPLFL--ERC PHPVTLAGML EMGVSYLPVN QNWERYLAEA
451 500
ENSTTRP00000008404/1-1229 QSTYEELQWE MKKSLMDLAN DACQLLSGER YKEDPWLWDL EWDLQEFKQK
BACU019509/1-1222 QSTYEELQWE MKKSLMDLAN DACQLLSGER YKEDPWLWDL EWDLQEFKQK
ENSP00000268124/1-1239 QGTYEELQRE MKKSLMDLAN DACQLLSGER YKEDPWLWDL EWDLQEFKQK
bmy_15707T0/1-1124 QSTYEELQWE MKKSLMDLAN DACQLLSGER YKEDPWLWDL EWDLQEFKQK
ENSBTAP00000011993/1-1217 QGTYEELQRE MKKSLMDLAN DACQLLSGER YKEDPWLWDL EWDVQEFKQK
501 550
ENSTTRP00000008404/1-1229 KAKKVKTKEP AAASKLPVEG PKAPGDPKDQ EDPGPPSEEE EFQRDVMARA
BACU019509/1-1222 KAKKVKRKEP ATASKLPVEG PEAPGDPKDQ EDPGPPSEEE EFQRDVMARA
ENSP00000268124/1-1239 KAKKVK-KEP ATASKLPIEG AGAPGDPMDQ EDLGPCSEEE EFQQDVMARA
bmy_15707T0/1-1124 KAKKVKRKEP ATASKLPVEG PEAPGDPKDQ EDPGPPSEEE EFQRDVMARA
ENSBTAP00000011993/1-1217 KAKKGKRREP AAASKLPVEG ADAPGDPRDQ EDPGPPSEEE EFQRDATART
551 600
ENSTTRP00000008404/1-1229 CLEQLRGTTE LLPKRPQHLP GHPGWYRKLC PRLDDPAWTP GPSLLSLQMR
BACU019509/1-1222 CLEQLRGTTE LLPKRPQHLP GHPGWYRKLC PRLDDPAWTP GPSLLSLQMR
ENSP00000268124/1-1239 CLQKLKGTTE LLPKRPQHLP GHPGWYRKLC PRLDDPAWTP GPSLLSLQMR
bmy_15707T0/1-1124 CLEQLRGTTE LLPKRPQHLP GHPGWYRKLC PRLDDPAWTP GPSLLSLQMR
ENSBTAP00000011993/1-1217 CLEQLRGTTE LLPKRPQHLP GHPGWYRKLC PRLDDPEWTP GPSLLSLQMR
601 650
ENSTTRP00000008404/1-1229 VTPKLMALTW DGFPLHYSER HGWGYLVPGR RDNLAKVPPG SGLTSAGVAC
BACU019509/1-1222 VTPKLMALTW DGFPLHYSER HGWGYLVPGR RDNLAKVPPG SGLTSAGVAC
ENSP00000268124/1-1239 VTPKLMALTW DGFPLHYSER HGWGYLVPGR RDNLAKLPTG TTLESAGVVC
bmy_15707T0/1-1124 VTPKLMALTW DGFPLHYSER HGWGYLVPGR RDNLAKVPPG SGLTSAGVAC
ENSBTAP00000011993/1-1217 VTPKLMALTW DGFPLHYSEQ HGWGYLVPGR RDNLAQVSAG STPTSAGAAC
651 700
ENSTTRP00000008404/1-1229 PYTXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXX-XXXXXX
BACU019509/1-1222 PYTA--QAHR ASVPQLGVCH VPPAPASFA- -LFRMVTAAM WAAPLPKTSC
ENSP00000268124/1-1239 PYRAIESLYR KHCLEQGKQQ LMPQEAGLAE EFLLTDNSAI WQT-VEELDY
bmy_15707T0/1-1124 PYTAIESLYR KHCLEQGKQQ LELQEADLAE EFLLTDSSAM WQT-VEEMGC
ENSBTAP00000011993/1-1217 PHTAIESLYR KHCLEQGKQQ LELPQADLSE EFLLSDSGAM WQT-VEELGC
701 750
ENSTTRP00000008404/1-1229 XXXXXXXXXX XXXXXXXXXX ---------- ---------- ----------
BACU019509/1-1222 PRWRTAPCRL AQEVSVGPVP ---------- ---------- ----------
ENSP00000268124/1-1239 LEVEAEAKME NLRAAVPGQP ---------- ---------- ----------
bmy_15707T0/1-1124 LEVEAEARME NLRVAVPGQP PALLTCSPFQ ALFPPPTPWP SLNAGAGAGP
ENSBTAP00000011993/1-1217 LEVEAEAKME NLQEAVPGQP ---------- ---------- ----------
751 800
ENSTTRP00000008404/1-1229 ----XXXXXX ---XXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
BACU019509/1-1222 ----WKSTKR FLFGG----T PINVSGGSPW EGRDM----- LSVRASGRVT
ENSP00000268124/1-1239 ----LALTAR ---GGPKDTQ PSYHHGNGPY NDVDIPGCWF FKLPHKDGNS
bmy_15707T0/1-1124 DLGVWPPQTA --AGGPKASQ PAYHHGNGPY NDVDIPGCWF FKLPHKDGNS
ENSBTAP00000011993/1-1217 ----LAPTAA ---GGPKASQ PAYHHGNGPY NDVDIPGCWF FKLPHKDGNS
801 850
ENSTTRP00000008404/1-1229 XXXXX-XXXX XXXXXXXXXX XXXXXXXXX- ---------- XXXXXXXXXX
BACU019509/1-1222 AVLGSLPLPP TQGPLTACAA VEGQPGLEAW LLVVLVPWDR GQDSFPLQ--
ENSP00000268124/1-1239 CNVGS-PFAK DFLPKMEDGT LQAGPGGAS- ---------- GPRALEINKM
bmy_15707T0/1-1124 CNVGS-PFAK DFLPKMEDGT LQAGPGGAS- ---------- GPRALEINKM
ENSBTAP00000011993/1-1217 CNVGS-PFAK DFLPKMEDGS LQAGPGGAS- ---------- GPRALEINKM
851 900
ENSTTRP00000008404/1-1229 XXXXXXXXXR ISSQMVVWLP RSALPRAVTR HPHYDEEGRY GAILPQVVTA
BACU019509/1-1222 LQFPCYVKRL VLSQMVVWLP RSALPRAVTR HPHYDEEGRY GAILPQVVTA
ENSP00000268124/1-1239 ISFWRNAHKR ISSQMVVWLP RSALPRAVIR HPDYDEEGLY GAILPQVVTA
bmy_15707T0/1-1124 ISFWRNAHKR ISSQMVVWLP RSALPRAVTR HPHYDEEGRY GAILPQVVTA
ENSBTAP00000011993/1-1217 ISFWRNAHKR ISSQMVVWLP RSALPRAVTR HANYDEEGRY GAILPQVVTA
901 950
ENSTTRP00000008404/1-1229 GTITRRAVEP TWLTASNARP DRVGSELKAM VQAPPGYILV GADVDSQELW
BACU019509/1-1222 GTITRRAVEP TWLTASNARP DRVGSELKAM VQAPPGYVLV GADVDSQELW
ENSP00000268124/1-1239 GTITRRAVEP TWLTASNARP DRVGSELKAM VQAPPGYTLV GADVDSQELW
bmy_15707T0/1-1124 GTITRRAVEP TWLTASNARP DRVGSELKAM VQAPPGYVLV GADVDSQELW
ENSBTAP00000011993/1-1217 GTITRRAVEP TWLTASNARP DRVGSELKAM VQAPPGYVLV GADVDSQELW
951 1000
ENSTTRP00000008404/1-1229 IAAVLGDAHF AGMHGCTAFG WMTLQGRKSR GTDLHSKTAA TVGISREHAK
BACU019509/1-1222 IAAVLGDAHF AGMHGCTAFG WMTLQGRKSR GTDLHSKTAA TVGISREHAK
ENSP00000268124/1-1239 IAAVLGDAHF AGMHGCTAFG WMTLQGRKSR GTDLHSKTAT TVGISREHAK
bmy_15707T0/1-1124 IAAVLGDAHF ASMHGCTAFG WMTLQGRKSR GTDLHSKTAA TVGISREHAK
ENSBTAP00000011993/1-1217 IAAVLGDAHF AGMHGCTAFG WMTLQGRKSR GTDLHSKTAA TVGISREHAK
1001 1050
ENSTTRP00000008404/1-1229 VFNYGRIYGA GQPFAERLLM QFNHRLTRQE AAEKARQMYA VTKGLRRYRL
BACU019509/1-1222 VFNYGRIYGA GQPFAERLLM QFNHRLTRQE AAEKAQQMYA VTKGLRRYRL
ENSP00000268124/1-1239 IFNYGRIYGA GQPFAERLLM QFNHRLTQQE AAEKAQQMYA ATKGLRWYRL
bmy_15707T0/1-1124 VFNYGRIYGA GQPFAERLLM QFNHRLTRQE AAEKARQMYA VTKGLRRYRL
ENSBTAP00000011993/1-1217 IINYGRIYGA GQPFAERLLM QFNHRLTRQE AAEKAQQMYA VTKGLRRYRL
1051 1100
ENSTTRP00000008404/1-1229 SDEGEWLLRE LDLPVDRTED GWVSLQDLRK IQREASRKSQ WKKWEVVAER
BACU019509/1-1222 SDEGEWLVRE LDLPVDRTED GWVSLQDLRK IQREASRKSQ WKKWEVVAER
ENSP00000268124/1-1239 SDEGEWLVRE LNLPVDRTEG GWISLQDLRK VQRETARKSQ WKKWEVVAER
bmy_15707T0/1-1124 SDEGEWLVRE LDLPVDRTED GWVSLQDLRK IQREASRKSQ WKKWEVVAER
ENSBTAP00000011993/1-1217 SDEGEWLVKE LDLPVERTED GWVSLKDLRK IQREASKKSR WKKWEVVAQR
1101 1150
ENSTTRP00000008404/1-1229 AWMGGTESEM FNKLESIAMS DTPCTPVLGC RITRALEPSA VQGEFMTSRV
BACU019509/1-1222 AWMGGTESEM FNKLESIAMS DTPRTPVLGC RITRALEPSA VQGEFMTSRV
ENSP00000268124/1-1239 AWKGGTESEM FNKLESIATS DIPRTPVLGC CISRALEPSA VQEEFMTSRV
bmy_15707T0/1-1124 AWMGGTESEM FNKLESIAMS DTPRTPVLGC RITRALEPSA VQGEFMTSRV
ENSBTAP00000011993/1-1217 AWMGGTESEM FNKLESIATS DIPRTPVLGC RISRALEPCA VRGEFMTSRV
1151 1200
ENSTTRP00000008404/1-1229 NWVVQSSAVD YLHLMLVAMK WLFEEFAIDG RFCISIHDEV RYLVREEDRY
BACU019509/1-1222 NWVVQSSAVD YLHLMLVAMK WLFEEFAIDG RFCISIHDEV RYLVREEDRY
ENSP00000268124/1-1239 NWVVQSSAVD YLHLMLVAMK WLFEEFAIDG RFCISIHDEV RYLVREEDRY
bmy_15707T0/1-1124 NWVVQSSAVD YLHLMLVAMK WLFEEFAIDG RFCISIHDEV RYLVREEDRY
ENSBTAP00000011993/1-1217 NWVVQSSAVD YLHLMLVAMK WLFEEFAIDG RFCISIHDEV RYLVREEDRY
1201 1250
ENSTTRP00000008404/1-1229 RAALALQITN LLTRCMFAYK LGLNDLPQSV AFFSTVDIDQ CLRKEVTMDC
BACU019509/1-1222 RAALALQITN LLTRCMFAYK LGLNDLPQSV AFFSTVDIDQ CLRKEVTMDC
ENSP00000268124/1-1239 RAALALQITN LLTRCMFAYK LGLNDLPQSV AFFSAVDIDR CLRKEVTMDC
bmy_15707T0/1-1124 RAALALQITN LLTRCMFAYK LGLNDLPQSV AFFSTVDIDQ CLRKEVTMDC
ENSBTAP00000011993/1-1217 RAALALQITN LLTRCMFAHK LGLNDLPQSV AFFSTIDIDQ CLRKEVTMDC
1251 1300
ENSTTRP00000008404/1-1229 KTPSNPTGME RRYGIPEGEA LDIYQIIELT KGSLEK-SQP GP
BACU019509/1-1222 KTPSNPTGME SRYGIPEGEA LDIYQIIELT KGSLEK---- --
ENSP00000268124/1-1239 KTPSNPTGME RRYGIPQGEA LDIYQIIELT KGSLEKRSQP GP
bmy_15707T0/1-1124 KTPSNPTGME RRYGIPEGEH NTFVPPYS-- ---------- --
ENSBTAP00000011993/1-1217 KTPSNPTGME RRYGIPQGEA LDIYQIIELT KGSLEK---- --