KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:24 2014 Check: 00 .. Name: bmy_00744T0/1-559 Len: 992 Check: 5882 Weight: 1.00 Name: ENSTTRP00000012464/1-908 Len: 992 Check: 3604 Weight: 1.00 Name: ENSP00000348489/1-980 Len: 992 Check: 7328 Weight: 1.00 Name: BACU011939/1-843 Len: 992 Check: 488 Weight: 1.00 Name: ENSBTAP00000011996/1-374 Len: 992 Check: 322 Weight: 1.00 // 1 50 bmy_00744T0/1-559 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012464/1-908 METAAAAAPG PGWAAEGERR RRLCSRRDRD REQRRRRGPG GDAPRALLAT ENSP00000348489/1-980 METAAAAAPG PGWAAEGERR RRRCSRRDRD REQRRRRGPG GDAPRALLAA BACU011939/1-843 MQILAFTPSE DG-------- --------PM NEEQEEAGSS GEPPQAPTSD ENSBTAP00000011996/1-374 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_00744T0/1-559 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012464/1-908 QRVSSSSSSL PPPASPWAPP SSGEWPG--- ---------- ---------- ENSP00000348489/1-980 PRGSSSSSSP PPPARPWSSA SSGERPGGPR RRRPRPRPRP PRPRARKRPA BACU011939/1-843 Q--------- ---------- ---------- -------PRP PRPRARKRPA ENSBTAP00000011996/1-374 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_00744T0/1-559 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012464/1-908 ---------- ---------- ---------- EEEEEDLIDG F-IASFAL-- ENSP00000348489/1-980 GSGSRGEEEE EEEEEGGADD GEAEEEPEEE EEEEEDLIDG FAIASFATLE BACU011939/1-843 GSGSRG-EEE EEEEEGGADD GEAEEEPEEE EEEEEDLIDG FAIASFASLE ENSBTAP00000011996/1-374 ---------- ---------- ---------- ---------- ---------- 151 200 bmy_00744T0/1-559 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012464/1-908 ELQKDASLQP PERLEHRLKH SGKRKRGGSS GATGEPGDSS DREPGRPSGD ENSP00000348489/1-980 ALQKDASLQP PERLEHRLKH SGKRKRGGSS GATGEPGDSS DREPGRPPGD BACU011939/1-843 ALQKDASLQP PERLEHRLKH SGKRKRGGSS GATGEPGDSS DREPGRPSGD ENSBTAP00000011996/1-374 ---------- ---------- ---------- ---------- ---------- 201 250 bmy_00744T0/1-559 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012464/1-908 RARKWPNKRR RKEASSRHSP EAGYICDAES DLDERVSDDD LDPSFTVSTS ENSP00000348489/1-980 RARKWPNKRR RKEASSRHSL EAGYICDAES DLDERVSDDD LDPSFTVSTS BACU011939/1-843 RARKWPNKRR RKEASSRHSL EAGYICDAES DLDERVSDDD LDPSFTVSTS ENSBTAP00000011996/1-374 ---------- ---------- ---------- ---------- ---------- 251 300 bmy_00744T0/1-559 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012464/1-908 KASGPHGAFN GNCEAKLSVV PKVSGLERSQ EQPPGPDPLL VPFPPKEPPP ENSP00000348489/1-980 KASGPHGAFN GNCEAKLSVV PKVSGLERSQ EQPPGPDPLL VPFPPKEPPP BACU011939/1-843 KASGPHGAFN GNCEAKLSVV PKVSGLERSQ EQPPGPDPLL VPFPPKEPPP ENSBTAP00000011996/1-374 ---------- ---------- ---------- ---------- ---------- 301 350 bmy_00744T0/1-559 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012464/1-908 PPAPRPPISP PAPLPAAPSL PPPPQPQLQL RVSPFGLRTS PYGSSLDLST ENSP00000348489/1-980 PPVPRPPVSP PAPLPATPSL PPPPQPQLQL RVSPFGLRTS PYGSSLDLST BACU011939/1-843 PPAPRPPVSP PAPLPAAPSL PPPPQPQLQL RVSPFGLRTS PYGSSLDLST ENSBTAP00000011996/1-374 ---------- ---------- -------MHV RV-------- ---------- 351 400 bmy_00744T0/1-559 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012464/1-908 GXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000348489/1-980 GSSSRPPPKA PAPPVAQPPP SSSSSSSSSS SASSSSAQLT HRPPTPSLPL BACU011939/1-843 GSSSRPPPKA PAPPVAQPPP SSSSSSSSSS SASSSSAQLT HRPPTPSLPL ENSBTAP00000011996/1-374 ---------- ---------- ---------- ---------- ---------- 401 450 bmy_00744T0/1-559 ------FPPP GLRPAPPPPH PSLFSPGPAL PPPPPLLQVP GHPGASAANA ENSTTRP00000012464/1-908 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000348489/1-980 PLSTHSFPPP GLRPPPPPHH PSLFSPGPTL PPPPPLLQVP GHPGASAANA BACU011939/1-843 PLSTHSFPPP GLRPXX---- --LFSPGPAL PPPPPLLQVP GHPGASAANA ENSBTAP00000011996/1-374 ---------- ---------- ---------- ---------- ---------- 451 500 bmy_00744T0/1-559 LSEQDLIGQD LNSRYLNAQG GPEVVGAGGS ARPLAFQFHQ HNHQHQHTHQ ENSTTRP00000012464/1-908 XXXQDLIGQD LNSRYLNAQG GPEVVGAGGS ARPLAFQFHQ HNHQHQHTHQ ENSP00000348489/1-980 LSEQDLIGQD LNSRYLNAQG GPEVVGAGGS ARPLAFQFHQ HNHQHQHTHQ BACU011939/1-843 LSEQDLIGQD LNSRYLNAQG GPEVVGAGGS ARPLAFQFHQ HNHQHQHTHQ ENSBTAP00000011996/1-374 ---------- ---------- ---------- ----AYMILR H--------- 501 550 bmy_00744T0/1-559 HTHQHFTPYP PGLLPPHGPH MFEKYPGKME GLFRHNPYTA FPPAVPGLPP ENSTTRP00000012464/1-908 HTHQHFTPYP PGLLPPHGPH MFEKYPGKME GLFRHNPYTA FPPAVPGLPP ENSP00000348489/1-980 HTHQHFTPYP PGLLPPHGPH MFEKYPGKME GLFRHNPYTA FPPAVPGLPP BACU011939/1-843 HTHQHFTPYP PGLLPPHGPH M--------- ------PYTA FPPAVPGLPP ENSBTAP00000011996/1-374 ---------- ---------- ---------- ---------- ---------- 551 600 bmy_00744T0/1-559 GLPPAVSFGS LQGAFQPKST NPELPPRLGP VPSGLPQKGT QIPDHFRPPL ENSTTRP00000012464/1-908 GLPPAVSFGS LQGAFQPKST NPELPPRLGP VPSGLPQKGT QIPDHFRPPL ENSP00000348489/1-980 GLPPAVSFGS LQGAFQPKST NPELPPRLGP VPSGLSQKGT QIPDHFRPPL BACU011939/1-843 GLPPAVSFGS LQGAFQPKST NPELPPRLGP VPSGLPQKGT QIPDHFRPPL ENSBTAP00000011996/1-374 ---------- ---------- ---------- ---------- ---------- 601 650 bmy_00744T0/1-559 RKPGKWCAMH VRVAYMILRH QEKMKGDSHK LDFRNDLLPC LPGPYGALPP ENSTTRP00000012464/1-908 RKPGKWCAMH VRVAYMILRH QEKMKGDSHK LDFRNDLLPC LPGPYGALPP ENSP00000348489/1-980 RKPGKWCAMH VRVAYMILRH QEKMKGDSHK LDFRNDLLPC LPGPYGALPP BACU011939/1-843 R--------- ---------- -----GDSHK LDFRNDLLPC LPGPYGALPP ENSBTAP00000011996/1-374 ---------- ---------- QEKMKGDSHK LDFRNDLLPC LPGPYGALPP 651 700 bmy_00744T0/1-559 GQELSHPAAS LFTATGAVHA AANPFTAAPG AHGPFLSPST HIDPFGRPTS ENSTTRP00000012464/1-908 GQELSHPAAS LFTATGAVHA AANPFTAAPG AHGPFLSPST HIDPFGRPTS ENSP00000348489/1-980 GQELSHP-AS LFTATGAVHA AANPFTAAPG AHGPFLSPST HIDPFGRPTS BACU011939/1-843 GQELSHPAAS LFTATGAVHA AANPFTAAPG AHGPFLSPST HIDPFGRPTS ENSBTAP00000011996/1-374 GQELSHPAAS LFTATGAVHA AANPFTAAPG AHGPFLSPST HIDPFGRPTS 701 750 bmy_00744T0/1-559 FASLAALSNG AFGGLGSPTF NSGAVFAQKE SPGAPPAFAS PPDPWGRLHR ENSTTRP00000012464/1-908 FASLAALSNG AFGGLGSPTF NSGAVFAQKE SPGAPPAFAS PPDPWGRLHR ENSP00000348489/1-980 FASLAALSNG AFGGLGSPTF NSGAVFAQKE SPGAPPAFAS PPDPWGRLHR BACU011939/1-843 FASLAALSNG AFGGLGSPTF NSGAVFAQKE SPGAPPAFAS PPDPWGRLHR ENSBTAP00000011996/1-374 FASLAALSNG AFGGLGSPTF NSGAVFAQKE SPGAPPAFAS PPDPWGRLHR 751 800 bmy_00744T0/1-559 SPLAFPAWVR PPEAARTPGS DKERPVERRE PSLTKEEKDR DLPFSRPQLR ENSTTRP00000012464/1-908 SPLAFPAWVR PPEAARTPGS DKERPVERRE PSLTKEEKDR DLPFSRPQLR ENSP00000348489/1-980 SPLTFPAWVR PPEAARTPGS DKERPVERRE PSITKEEKDR DLPFSRPQLR BACU011939/1-843 SPLAFPAWVR PPEAARTPGS DKERPVERRE PSLTKEEKD- ---------- ENSBTAP00000011996/1-374 SPLAFPAWVR PPEAARTPGS DKERPVERRE PSLTKEEKDR DLPFSRPQLR 801 850 bmy_00744T0/1-559 VSPATPKARA GEEGARPAKE SVRVKEERKE EAAAAAAAAA AAAAAAAAAA ENSTTRP00000012464/1-908 VSPATPKARA GEEGARPAKE -VRVKEERNE AAAAAAAAAA AAARAAAAH- ENSP00000348489/1-980 VSPATPKARA GEEGPRPTKE SVRVKEERKE EAAAAAAAAA AAAAAAAAAA BACU011939/1-843 ---------- ---------- -------RKE EAAAAAAAAA AAAAAAAAA- ENSBTAP00000011996/1-374 VSPATPKARA GEEGARPTKE SVRVKEERKE EAAAAAAAAA AAAAAAAAAA 851 900 bmy_00744T0/1-559 A-GPQGL-HL LFERPRPPPF LGPSPPERCA GFLEPAWLAG PPRLSRPPRF ENSTTRP00000012464/1-908 ----TGLSSL LFE---PPPF -GPSLSERCA GL-----EAA GPCLSR-PRF ENSP00000348489/1-980 T-GPQGL-HL LFERPRPPPF LGPSPPDRCA GFLEPTWLAA PPRLARPPRF BACU011939/1-843 --GPQGL-HL LFERPRPPPF LGPSPPEGCA GFLEPAWLAG PPRLSRPPRF ENSBTAP00000011996/1-374 TTGPQGL-HL LFERPRPPPF LGPSPPERCA GFLEPTWLAG PPRLARPPRF 901 950 bmy_00744T0/1-559 YEAGEELTGP RGRC------ -----PPLRS RACPSPAIQP LGSTAAANCC ENSTTRP00000012464/1-908 YEAGEELTGR AVAAA--LYG LEPAHP-LYS RLAPPP---- -----PPAAA ENSP00000348489/1-980 YEAGEELTGP GAVAAARLYG LEPAHPLLYS RLAPPP---- -----PPAAA BACU011939/1-843 YEAGEELTGP GAVAAARLYG LEPAHPLLYS RLAPPP---- -----PPTAA ENSBTAP00000011996/1-374 YEAGEELTGP GAVAAARLYG LEPAHPLLYS RLAPPP---- -----PPTAA 951 1000 bmy_00744T0/1-559 PGNPSSSQQD PARSPFGGTS S--ACARPSA ---------- -- ENSTTRP00000012464/1-908 PGTPHLLSKT PPGALLGAPP PLVPAPRPSS PPRAPGPTRA DR ENSP00000348489/1-980 PGTPHLLSKT PPGALLGAPP PLVPAPRPSS PPRGPGPARA DR BACU011939/1-843 PGTPHLLSKT PPGALLGAPP PLVPAPRPSS PPRAPGPARA DR ENSBTAP00000011996/1-374 PGTPHLLSKT PPGALLGAPP PLVPAPRPSS PPRAPGPARA DR