KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:26 2014 Check: 00 .. Name: ENSP00000297273/1-797 Len: 854 Check: 2912 Weight: 1.00 Name: ENSBTAP00000012005/1-797 Len: 854 Check: 4815 Weight: 1.00 Name: bmy_06977T0/1-641 Len: 854 Check: 2156 Weight: 1.00 Name: ENSTTRP00000003494/1-758 Len: 854 Check: 2671 Weight: 1.00 Name: BACU016842/1-587 Len: 854 Check: 3619 Weight: 1.00 // 1 50 ENSP00000297273/1-797 MAALAYNLGK REINHYFSVR SAKVLALVAV LLLAACHLAS RRYR-GNDSC ENSBTAP00000012005/1-797 MAALAYNLGK REINHYFSVR SAKVLALVAV LLLAVCHLAS RRYR-GNDSC bmy_06977T0/1-641 MGNVETDIEQ SS-------- --------SS FLYFLC-LHT RPYRTGNDSC ENSTTRP00000003494/1-758 MAALAYNLGK REIKHYFSVR SAKVLTLVAV LLLALCHLAS RRYR-GNDSC BACU016842/1-587 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000297273/1-797 EYLLSSGRFL GEKVWQPHSC MMHKYKISEA KNCLVDKHIA FIGDSRIRQL ENSBTAP00000012005/1-797 EYLLSSGRFL GEKVWQPHSC MMHKYKISEA KNCLVDKHIA FIGDSRIRQL bmy_06977T0/1-641 EYLLSSGRFL GEKVWQPHSC MMHKYKISEA KNCLVDKHIA FIGDSRIRQL ENSTTRP00000003494/1-758 EYLLSSGRFL GEKVWQPHSC MMHKYKISEA KNCLVDKHIA FIGDSRIRQL BACU016842/1-587 ---------- ---------- MMHKYKISEA KNCLVDKHIA FIGDSRIRQL 101 150 ENSP00000297273/1-797 FYSFVKIINP QFKEEGNKHE NIPFEDKTAS VKVDFLWHPE VNGSMKQCIK ENSBTAP00000012005/1-797 FYSFVKIINP QFKEEGNKHE NIPFEDKIAS VKVDFLWHPE VNGSMKQCIK bmy_06977T0/1-641 FYSFVKIINP QFKEEGNKHE NIPFEDKTAS VKVDFLWHPE VNGSMKQCIK ENSTTRP00000003494/1-758 FYSFVKIINP QFKEEGNKHE NIPFEDKTAS VKV-FLWHPE VNGSMKQCIK BACU016842/1-587 FYSFVKIINP QFKEEGNKHE NIPFEDKTAS VKVDFLWHPE VNGSMKQCIK 151 200 ENSP00000297273/1-797 VWTEDSIAKP HVIVAGAATW SIKIHNGSSE ALSQYKMNIT SIAPLLEKLA ENSBTAP00000012005/1-797 VWTEDSVAKP HVIVAGAATW SIKIHNGSNE ALSQYKMNIT SIAPLLEKLA bmy_06977T0/1-641 VWTEDSVAKP HVVVAGAATW SIKIHNGSNE ALSQYKMNIT SIAPLLEKLA ENSTTRP00000003494/1-758 VWTEDSVAKP HVVVAGAATW SIKIHNGSNE ALSQYKMNIT SIAPLLEKLA BACU016842/1-587 VWTEDSVAKP HVVVAGAATW SIKIHNGSNE ALSQYKMNIT SIAPLLEKLA 201 250 ENSP00000297273/1-797 KTSDVYWVLQ DPVYEDLLSE NRKMITNEKI DAYNEAAVSI LNSSTRNSKS ENSBTAP00000012005/1-797 KTSDVYWVLQ DPVYEDLLSE NRKMITNEKI DAYNEAAVSI LNSSTRNSKS bmy_06977T0/1-641 KTSDVYWVLQ DPVYEDLLSE NRKMITNEKI DAYNEAAISI LNSSTRNSKS ENSTTRP00000003494/1-758 KTSDVYWVLQ DPVYEDLLSE NRKMITNEKI DAYNEAAISI LNSSTRNSKS BACU016842/1-587 KTSDVYWVLQ DPVYEDLLSE NRKMITNEKI DAYNEAAISI LNSSTRNSKS 251 300 ENSP00000297273/1-797 NVKMFSVSKL IAQETIMESL DGLHLPESSR ETTAMILMNV YCNKILKPVD ENSBTAP00000012005/1-797 HVKVFSVSKL IAQETIMESL DGLHLPESSR ETSAMILMNV YCNKILKPVD bmy_06977T0/1-641 NVKMFSVSKL IAQETIMESL DGLHLPESSR ETSAMILMNV YCNKILKPVD ENSTTRP00000003494/1-758 NVKMFSVSKL IAQETIMESL DGLHLPESSR ETSAMILMNV YCNRILKPVD BACU016842/1-587 NVKMFSVSKL IAQETIMESL DGLHLPESSR ETSAMILMNV YCNKILKPVD 301 350 ENSP00000297273/1-797 GSCCQPRPPV TLIQKLAACF FTLSIIGYLI FYIIHRNAHR KNKPCTDLES ENSBTAP00000012005/1-797 GSCCQPRPPL TLIQKLAACF FTLSIVGYLI FYIIHRNAHR KNKPCTDLES bmy_06977T0/1-641 GSCCQPRPPL TLLQKLAACF FTLSIIGYLI FYIIHRNAHR KNKPCTDLES ENSTTRP00000003494/1-758 GSCCQPRPPL TLLQKLAACF FTLSIIGYLI FYIIHHNAHR KNKPCTDLES BACU016842/1-587 GSCCQPRPPL TLLQKLAACF FTLSIIGYLI FYIIHRNAHR KNKPCTDLES 351 400 ENSP00000297273/1-797 GEEKKNIINT PVSSLEILLQ SFCKLGLIMA YFYMCDRANL FMKENKFYTH ENSBTAP00000012005/1-797 GEEKKNIINP PVSPLEIFLQ SFCKLGLIMA YFYMCDRANL FMKENKFYTH bmy_06977T0/1-641 GEEKKNIINP PVSPLGILLQ SFCKLGLIMA YFYICDRANL FMKENKFYTH ENSTTRP00000003494/1-758 GEEKKNIINP PVSPLGILLQ SFCKLGLIMA YFYMCDRANL FMKENKFYTH BACU016842/1-587 GEEKKNIINP PVSPLGILLQ SFCKLGLIMA YFYICDRANL FMKENKFYTH 401 450 ENSP00000297273/1-797 SSFFIPIIYI LVLGVFYNEN TKE------- ---------- ---------- ENSBTAP00000012005/1-797 STFFIPIIYI LVLGVFYNEN TKE------- ---------- ---------- bmy_06977T0/1-641 STFFIPIIYI LVLGVFYNEN TKE------- ---------- ---------- ENSTTRP00000003494/1-758 STFFIPIIYI LVLGVFYNEN TKE------- ---------- ---------- BACU016842/1-587 STFFIPIIYI LVLGVFYNEN TKEGSFERSI SFISYEKNVN IFNVYCPNNS 451 500 ENSP00000297273/1-797 ---------- ----TKVLNR EQTDEWKGWM QLVILIYHIS GASTFLPVYM ENSBTAP00000012005/1-797 ---------- ----TKVLNR EQTDEWKGWM QLVILIYHIS GASTFLPVYM bmy_06977T0/1-641 ---------- ----TKVLNR EQTDEWKGWM QLVILIYHIS GASTFLPVYM ENSTTRP00000003494/1-758 ---------- ----TKVLNR EQTDEWKGWM QLVILIYHIS GASTFLPVYM BACU016842/1-587 FMMNFKTDFD SFTQTKVLNR EQTDEWKGWM QLVILIYHIS GASTFLPVYM 501 550 ENSP00000297273/1-797 HIRVLVAAYL FQTGYGHFSY FWIKGDFGIY RVCQVLFRLN FLVVVLCIVM ENSBTAP00000012005/1-797 HIRVLVAAYL FQTGYGHFSY FWVKGDFGIH RVCQVLFRLN FLVVVLCIVM bmy_06977T0/1-641 HIRVLVAAYL FQTGYGHFSY FWIKGDFGIH RVCQ------ ---------- ENSTTRP00000003494/1-758 HIRVLVAAYL FQTGYGHFSY FWIKGDFGIH RVCQVLFRLN FLVVVLCIVM BACU016842/1-587 HIRVLVAAYL FQTGYGHFSY FWIKGDFGIH RVCQ------ ---------- 551 600 ENSP00000297273/1-797 DRPYQFYYFV PLVTVWFMVI YVTLALWPQI IQKKANGNCF WHFGLLLKLG ENSBTAP00000012005/1-797 DRPYQFYYFV PLVTVWFMVI YVTLALWPQI TQKKANGNCL WHFGLLLKLA bmy_06977T0/1-641 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003494/1-758 DRPYQFYYFV PLVTVWFMVI YVTLALWPQI IQKKANGNCF WHFGLLLKLA BACU016842/1-587 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000297273/1-797 FLLLFICFLA YSQGAFEKIF SLWPLSKCFE LKGNVYEWWF RWRLDRYVVF ENSBTAP00000012005/1-797 FLLLCICFLA YSQGAFEKIF SLWPLSKCFE LKGNVYEWWF RWRLDRYVVF bmy_06977T0/1-641 ---------- ---GAFEKIF SLWPLSKCFE LKGNVYEWWF RWRLDRYVVF ENSTTRP00000003494/1-758 FLLLCICFLA YSQXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXVVF BACU016842/1-587 ---------- ---------- ---------- ---------- -------VVF 651 700 ENSP00000297273/1-797 HGMLFAFIYL ALQKRQILSE GKGEPLFSNK ISNFLLFISV VSFLTYSIWA ENSBTAP00000012005/1-797 HGMLFAFIYL ALQKRQILSE GKGEPLFSSK ISNFLLFISV VSFLTYSIWA bmy_06977T0/1-641 HGMLFAFIYL ALQKRQVLSE GKGEPLFSNK VSNFLLFISV VSFLTYSIWA ENSTTRP00000003494/1-758 HGMLFAFIYL ALQKRQVLSE GKGEPLFSNK VSNFLLFISV VSFLTYSIWA BACU016842/1-587 HGMLFAFIYL ALQKRQVLSE GKGEPLFSNK VSNFLLFISV VSFLTYSIWA 701 750 ENSP00000297273/1-797 SSCKNKAECN ELHPSVSVVQ IL-------- ------AFIL IRNIPGYARS ENSBTAP00000012005/1-797 SSCKNKAQCN ELHPSVSVVQ IL-------- ------AFIL IRNIPGYARS bmy_06977T0/1-641 SSCKNKAECN ELHPSVSVVQ IL-------- ------AFIL IRNIPGYARS ENSTTRP00000003494/1-758 SSCKNKAECN ELHPSVSVVQ LFICQYHIWL AADTRGILVL IPGNP-MLNI BACU016842/1-587 SSCKNKAECN ELHPSVSVVQ IL-------- ------AFIL IRNIPGYARS 751 800 ENSP00000297273/1-797 VYSSFFAWFG KISLELFICQ YHIWLAADTR GILVLIPGNP MLNIIVSTFI ENSBTAP00000012005/1-797 VYSSFFAWFG KISLELFICQ YHIWLAADTR GILVLIPGNP MLNIIVSTFI bmy_06977T0/1-641 VYSSFFAWFG ---------- ---------- ---------- ---------- ENSTTRP00000003494/1-758 IVSTFI--FV ---------- ---------- ---------- ---------- BACU016842/1-587 VYSSFFAWFG ---------- ---------- ---------- ---------- 801 850 ENSP00000297273/1-797 FVCVAHEISQ ITNDLAQIII PKDNSSLLKR LACIAAFFCG LL-ILSSIQD ENSBTAP00000012005/1-797 FVCVAHEISQ ITNDLAQIII PKDNSSLLKR LACIAAFFCG LL-ILSSIQD bmy_06977T0/1-641 --KISLEVGT L--------- ------IFWS VLHNQVLYAG VY-VNEYIGV ENSTTRP00000003494/1-758 --CVAHEISQ ITNDLAQIII PKDNSSLLKR LACIAAFFCG LL-ILSS--- BACU016842/1-587 --KISLELYQ ---------- ---------- --CNTSYPVD PLNMLSPI-- 851 900 ENSP00000297273/1-797 KSKH ENSBTAP00000012005/1-797 KSRH bmy_06977T0/1-641 ---- ENSTTRP00000003494/1-758 ---- BACU016842/1-587 ----