KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:27 2014 Check: 00 .. Name: ENSTTRP00000009273/1-360 Len: 368 Check: 5813 Weight: 1.00 Name: ENSP00000007699/1-364 Len: 368 Check: 8928 Weight: 1.00 Name: BACU001257/1-238 Len: 368 Check: 3645 Weight: 1.00 Name: ENSBTAP00000012026/1-360 Len: 368 Check: 4905 Weight: 1.00 Name: bmy_01760T0/1-312 Len: 368 Check: 8947 Weight: 1.00 // 1 50 ENSTTRP00000009273/1-360 MSEAEAAVVA TAAPAATVPA TAAGVVAVVV PVPAGESQKA GSGA--GGVG ENSP00000007699/1-364 MSEVEAAAGA TAVPAATVPA TAAGVVAVVV PVPAGEPQKG GGAGGGGG-- BACU001257/1-238 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012026/1-360 MSEAEAAVVA TAAPAATVPA TAAGVVAVVV PVPAGEPQKA GGGAGSGGVG bmy_01760T0/1-312 MSEAEAAVVA TAAPAATVPA TAAGVVAVVV PVPAVESQKA GSGAGGGGVG 51 100 ENSTTRP00000009273/1-360 AAASSGPAAG TPSAPGPRTP GNPATAASGT PAPPARSQAD KPVLAIQVLG ENSP00000007699/1-364 --AASGPAAG TPSAPGSRTP GNPATAVSGT PAPPARSQAD KPVLAIQVLG BACU001257/1-238 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012026/1-360 --TASGPAVG TPSAPGPRTP GNPATAASGT PAPLARSQAD KPVLAIQVLG bmy_01760T0/1-312 AAAASGPAAG TPSAPGPRTP GNPATAASGT PAPPARSQAD KP-------- 101 150 ENSTTRP00000009273/1-360 TVKWFNVRNG YGFINRNDTK EDVFVHQTAI KRNNPRKFLR SVGDGETVEF ENSP00000007699/1-364 TVKWFNVRNG YGFINRNDTK EDVFVHQTAI KRNNPRKFLR SVGDGETVEF BACU001257/1-238 ---------- -----RNDTK EDVFVHQTAI KRNNPRKFLR SVGDGETVEF ENSBTAP00000012026/1-360 TVKWFNVRNG YGFINRNDTK EDVFVHQTAI KRNNPRKFLR SVGDGETVEF bmy_01760T0/1-312 ---------- ---------- -------TAI KRNNPRKFLR SVGDGETVEF 151 200 ENSTTRP00000009273/1-360 DVVEGEKXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000007699/1-364 DVVEGEKGAE ATNVTGPGGV PVKGSRYAPN RRKSRRFIPR PPSVAPPPMV BACU001257/1-238 DVVEGEKGAE AANVTGPGGV PVKGSRYAPN RRRFRRFIPR PRPAAPPPMV ENSBTAP00000012026/1-360 DVVEGEKGAE AANVTGPGGV PVKGSRYAPN RRRFRRFIPR PRPAAPPPMV bmy_01760T0/1-312 DVVEGEKGAE AANVTGPGGV PVKGSRYAPN RRRFRRFIPR PRPAAPPPMV 201 250 ENSTTRP00000009273/1-360 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000007699/1-364 AEIPSAGTGP GSKGERAEDS GQRPRRWCPP PFFYRRRFVR GPRPPNQQQP BACU001257/1-238 AEAPSGGTEP GREGERAEDS GQRPRRRRPP PFFYRRRFVR GPRPPNQQQP ENSBTAP00000012026/1-360 AEAPSGGTEP GSEGERAEDS GQRPRRRRPP PFFYRRRFVR GPRPPNQQQP bmy_01760T0/1-312 AEAPSGGTEP GREGERAEDS GQRPRRRRPP PFFYRRRFVR GPRPPNQQQP 251 300 ENSTTRP00000009273/1-360 XXXXXXXXXK ERAPLEGDQQ QGDERGPPPR FRPRYRRPFH PRPPQQPTTE ENSP00000007699/1-364 IEGTDRVEPK ETAPLEGHQQ QGDERVPPPR FRPRYRRPFR PRPRQQPTTE BACU001257/1-238 IEGTDGAEPK ETAPLERDQQ QGDERVPPPR FRPRYRRPFH PRPPQQPTTE ENSBTAP00000012026/1-360 IEGTDGVEPK ETAPLEGDQQ QGDERIPPPR FRPRYRRPFR PRPPQQPTTE bmy_01760T0/1-312 IEGTDGAEPK ETAPLERDQQ QGDERVPPPR FRPRYRRPFH LRPPQQPTTE 301 350 ENSTTRP00000009273/1-360 SGDGETKPSQ GPTDGSRPEP QRSRNRPYFQ RRRQQP---- --PGPGRPTA ENSP00000007699/1-364 GGDGETKPSQ GPADGSRPEP QRPRNRPYFQ RRRQQAPGPQ QAPGPRQPAA BACU001257/1-238 GGDGETKPSQ GPTDGSRPEP QRPRNRPYFQ RRRQQP---- --PGPGQPTA ENSBTAP00000012026/1-360 GGDGETKPSQ GPTDGSRPEP QRPRNRPYFQ RRRQQP---- --PGPRQSTA bmy_01760T0/1-312 GGDGETKPSQ GPTDGSRPEP QRPRNRPYFQ RRRQQP---- --PGPGQPTA 351 400 ENSTTRP00000009273/1-360 PETSAPINSG DPPTGIPE ENSP00000007699/1-364 PETSAPVNSG DPTTTILE BACU001257/1-238 PEVSASFSN- -------- ENSBTAP00000012026/1-360 PETSAPINSG DPPTTILE bmy_01760T0/1-312 PEG------- --------