KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:29 2014 Check: 00 .. Name: ENSTTRP00000004866/1-478 Len: 567 Check: 3746 Weight: 1.00 Name: ENSP00000332256/1-512 Len: 567 Check: 5320 Weight: 1.00 Name: bmy_17104T0/1-558 Len: 567 Check: 3376 Weight: 1.00 Name: ENSBTAP00000012030/1-490 Len: 567 Check: 5288 Weight: 1.00 Name: BACU007878/1-489 Len: 567 Check: 5870 Weight: 1.00 // 1 50 ENSTTRP00000004866/1-478 ---------- ---------- ---------- ---------- ---------- ENSP00000332256/1-512 ---------- ---------- ---------- ---------- ---------- bmy_17104T0/1-558 PVLQPIRQPP RAGGVGRSIK RRGAVTPRVG CAPPRPEQAP KTRALRTRER ENSBTAP00000012030/1-490 ---------- ---------- ---------- ---------- ---------- BACU007878/1-489 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000004866/1-478 ---------- ---------- ---------- ------IFIN NEWNESKSGK ENSP00000332256/1-512 ---MATANGA VENGQPDRKP PALPRPIRNL EVKFTKIFIN NEWHESKSGK bmy_17104T0/1-558 GGAMATTNGA VENGQPDRKS PALPRPVRNL EVKFTKIFIN NEWNESKSGK ENSBTAP00000012030/1-490 ---------- ---------P PSHPSSPGN- -----QIFIN NEWNESKSGK BACU007878/1-489 ---MATTNGA VENGQPDRKS PALPRPVRNL EVKFTKIFIN NEWNESKSGK 101 150 ENSTTRP00000004866/1-478 KFATYNPSTL EKICEVEEGD KLDVDKAVEA AQAAFQRGSP WRRLDALSRG ENSP00000332256/1-512 KFATCNPSTR EQICEVEEGD KPDVDKAVEA AQVAFQRGSP WRRLDALSRG bmy_17104T0/1-558 KFATYNPSTL EKICEVEEGD KLDVDKAVEA AQAAFQRGSP WRRLDALSRG ENSBTAP00000012030/1-490 KFATYNPSTL EKICEVEEGD KPDVDKAVEA AQAAFQRGSP WRRLDAPSRG BACU007878/1-489 KFATYNPSTL EKICEVEEGD KLDVDKAVEA AQAAFQRGSP WRRLDALSRG 151 200 ENSTTRP00000004866/1-478 RLLHQLADLM ERDRAVLATL ETMDTGKPFL HAFFIDLEGC IKTLRYFAGW ENSP00000332256/1-512 RLLHQLADLV ERDRATLAAL ETMDTGKPFL HAFFIDLEGC IRTLRYFAGW bmy_17104T0/1-558 RLLHQLADLV ERDRAVLATL ETMDTGKPFL HAFFIDLEGC IKTLRYFAGW ENSBTAP00000012030/1-490 RLLQQLADLV ERDRAVLATL ETMDTGKPFL HAFFIDLEGC IKTLRYFAGW BACU007878/1-489 RLLHQLADLG ERDRAVLATL ETMDTGKPFL HAFFIDLEGC IKTLRYFAGW 201 250 ENSTTRP00000004866/1-478 ADKIQGRTIP TDDNVVCFTR HEPIGVCGAI TPWNFPLLML VWKLAPALCC ENSP00000332256/1-512 ADKIQGKTIP TDDNVVCFTR HEPIGVCGAI TPWNFPLLML VWKLAPALCC bmy_17104T0/1-558 ADKIQGRTIP TDDNVVCFTR HEPIGVCGAI TPWNFPLLML VWKLAPALCC ENSBTAP00000012030/1-490 ADKIQGRTIP TDDNVVCFTR HEPIGVCGAI TPWNFPLLML VWKLAPALCC BACU007878/1-489 ADKIQGRTIP TDDNVVCFTR HEPIGVCGAI TPWNFPLLML VWKLAPALCC 251 300 ENSTTRP00000004866/1-478 GNTVVVKPAE QTPLTALYLG SLIKEVGFPP GVVNIVPGFG PTVGAAISSH ENSP00000332256/1-512 GNTMVLKPAE QTPLTALYLG SLIKEAGFPP GVVNIVPGFG PTVGAAISSH bmy_17104T0/1-558 GNTVVVKPAE QTPLTALYLS SLIKEVGFPP GVVNIVPGFG PTVGAAISSH ENSBTAP00000012030/1-490 GNTVVLKPAE QTPLTALYLG SLIKEVGFPP GVVNIVPGFG PTVGAAISSH BACU007878/1-489 GNTVVVKPAE QTPLTALYLG SLIKEVGFPP GVVNIVPGFG PTVGAAISSH 301 350 ENSTTRP00000004866/1-478 PQINKIAFTG STE--VGKLV KEAASHSNLK RVTLELGGKN PCIVCADADX ENSP00000332256/1-512 PQINKIAFTG STE--VGKLV KEAASRSNLK RVTLELGGKN PCIVCADADL bmy_17104T0/1-558 PQINKIAFTG STESVLPMML SGSRRLDMFL PSVSDLTKQR PVAV------ ENSBTAP00000012030/1-490 PHINKIAFTG STE--VGKLV KEAASHSNLK RVTLELGGKN PCIVCADADL BACU007878/1-489 PQINKIAFTG STE--VGKLV KEAASHSNLK RVTLELGGKN PCIVCADADL 351 400 ENSTTRP00000004866/1-478 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000332256/1-512 DLAVECAHQG VFFNQGQCCT AASRVFVEEQ VYSEFVRRSV EYAKKRPVGD bmy_17104T0/1-558 DLAVECAHQG VFFNQGQCCT AASRVFVEEQ VYDEFVRRSV EFAKKRSIGD ENSBTAP00000012030/1-490 SLAVECAHQG VFFNQGQCCT AASRVFVEEQ VYDEFVRRSV EYAKKRPVGD BACU007878/1-489 DLAVECAHQG VFFNQGQCCT AASRVFVEEQ VYDEFVRRSV EFAKKRSIGD 401 450 ENSTTRP00000004866/1-478 XXXXXXXXXX XIDQKQFNKI LDLIESG-KE GAKLEYGGSA MEDRGLFIKP ENSP00000332256/1-512 PFDVKTEQGP QIDQKQFDKI LELIESGKKE GAKLECGGSA MEDKGLFIKP bmy_17104T0/1-558 PFDVRTEQGP QIDQKQFNKI LDLIESGKKE GAKLEYGGSA MEDRGLFIKP ENSBTAP00000012030/1-490 PFDVRTEQGP QIDQKQFDKI LDLIESGKKE GAKLECGGSA MEDRGLFIKP BACU007878/1-489 PFDVRTEQGP QIDQKQFNKI LDLIESGKKE GAKLEYGGSA MEDRGLFIKP 451 500 ENSTTRP00000004866/1-478 TVFSXXXXXX XXXXXXIFGP VQPILKFKNI EEVIKRANSL EYGLTAAVFT ENSP00000332256/1-512 TVFSEVTDNM RIAKEEIFGP VQPILKFKSI EEVIKRANST DYGLTAAVFT bmy_17104T0/1-558 TVFSEVTDTM RIAKEEIFGP VQPILKFKNI EEVIKRANSL EYGLTAAVFT ENSBTAP00000012030/1-490 TVFSEVTDTM RIAKEEIFGP VQPILKFKNI EEVIKRANSL EYGLTAAVFT BACU007878/1-489 TVFSEVTDTM RIAKEEIFGP VQPILKFKNI EEVIKRANSL EYGLTAAVFT 501 550 ENSTTRP00000004866/1-478 KNLDKALKLA SALESGTVWI NCYNAIYAQA PFGGFKMSGN GRELGEYALA ENSP00000332256/1-512 KNLDKALKLA SALESGTVWI NCYNALYAQA PFGGFKMSGN GRELGEYALA bmy_17104T0/1-558 KNLDKALKLA SALESGTVWI NCYNAIYAQA PFGGFKMSGN GRELGEYALA ENSBTAP00000012030/1-490 KNLDKALKLA SALESGTVWI NCYNAIYAQA PFGGFKMSGN GRELGEYALA BACU007878/1-489 KNLDKALKLA SALESGTVWI NCYNAIYAQA PFGGFKMSGN GREL------ 551 600 ENSTTRP00000004866/1-478 EYTEVKTVTI KLDDKDP ENSP00000332256/1-512 EYTEVKTVTI KLGDKNP bmy_17104T0/1-558 EYTEVKTVTI KLDD--- ENSBTAP00000012030/1-490 EYTEVKTVTI KLDDKDS BACU007878/1-489 ---------- -------