KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:31 2014 Check: 00 .. Name: ENSP00000381588/1-529 Len: 532 Check: 4691 Weight: 1.00 Name: ENSBTAP00000012036/1-490 Len: 532 Check: 1359 Weight: 1.00 Name: ENSTTRP00000000643/1-486 Len: 532 Check: 7320 Weight: 1.00 Name: bmy_13633T0/1-424 Len: 532 Check: 7579 Weight: 1.00 Name: BACU004405/1-488 Len: 532 Check: 3746 Weight: 1.00 // 1 50 ENSP00000381588/1-529 MPPAPPGGES GCEERGAAGH IEHSRYLSLL DAVDNSKMAL NSGSPPAIGP ENSBTAP00000012036/1-490 ---------- ---------- ---------- -------MAL NSGSSPGVGP ENSTTRP00000000643/1-486 ---------- ---------- ---------- ---------- --GSPPDVGP bmy_13633T0/1-424 ---------- ---------- ---------- -------MAL NSGSPPGVGP BACU004405/1-488 ---------- ---------- ---------- ---------- --GSPPGVGP 51 100 ENSP00000381588/1-529 YYENHGYQPE NPYPAQPTVV PTVYEVHPAQ YYPSPVPQYA PRVLTQASNP ENSBTAP00000012036/1-490 YYENHGYQPE SLYPQQPPTA PPAFEVYPAQ YYPPVVPQYT PRVQTHASTP ENSTTRP00000000643/1-486 YYENHGFQPE SLYPPQPPMA HRAYAGYPAQ YYPPAVPQYA PRVQTHTSTP bmy_13633T0/1-424 YYENHGFQPE SLYPPQPPMA HRAYTGYPAR YYPPAVPQYT PRVQTHTSTP BACU004405/1-488 YYENHGFQPE SLYPPQPPMA HRAYAGYPAR YYPPAVPQYT PRVQTHTSTP 101 150 ENSP00000381588/1-529 VVCTQPKSPS GTVCTSKTKK ALCITLTLGT FLVGAALAAG LLWKFMGSKC ENSBTAP00000012036/1-490 VIYRQPKPPS RTACTSKTKK ALCITFTLVV LLAGAILAAV LLWKYMEDEC ENSTTRP00000000643/1-486 VILMQPKPPS GPACTSRTKK VLCVTFSLGA LLAGAVLAAM LLWKLMEDEC bmy_13633T0/1-424 VILMQPKPPS GIACTSRTKK VLCVTFTLGA LLAGAVLAAV LLWKLLEDQC BACU004405/1-488 VILMQPKPPS GTACTSRTKK VLCVTFTLGA LLAGAVLAAV LLWELLEDQC 151 200 ENSP00000381588/1-529 SNSGIECDSS GTCINPSNWC DGVSHCPGGE DENRCVRLYG PNFILQVYSS ENSBTAP00000012036/1-490 --SGMECSSS GTCVSPSLWC DGILHCPSGE DENRCVRLYG PNFILQVYSA ENSTTRP00000000643/1-486 --LGMECSSS GTCVSPSHWC DGILHCPSGE DESRCVRLYG PNFILQVYSA bmy_13633T0/1-424 --LGMECSSL GTCVSPSHWC DGILHCPGGE DENRCVRLYG PNFILQVYSA BACU004405/1-488 --LGMECSSS GTCVSPSHWC DGILHCPGGE DENRCVRLYG PNFILQVYSA 201 250 ENSP00000381588/1-529 QRKSWHPVCQ DDWNENYGRA ACRDMGYKNN FYSSQGIVDD SGSTSFMKLN ENSBTAP00000012036/1-490 QRKSWHPVCQ DDWSESYGRA ACQDMGYRNS FYSSQGIADD SGATSFMKLN ENSTTRP00000000643/1-486 QRKSWHPVCQ DDWSDNYGRA ACQDMGYPNS FFSSQGIVDD SGATSFMKLN bmy_13633T0/1-424 QRKSWHPVCQ DDWSDNYGRA ACQDMGYP-- ---------- ---------- BACU004405/1-488 QRKSWHPVCQ DDWSDSYGRA ACQDMGYPNS FFSSQGIVDD SGATSFMKLN 251 300 ENSP00000381588/1-529 TSAGNVDIYK KLYHSDACSS KAVVSLRCIA CGVNLNSSRQ SRIVGGESAL ENSBTAP00000012036/1-490 ISANDIDLYK KLYHSDVCSS KTVVSLRCIE CGVSVKTSRQ SRIVGGSNAY ENSTTRP00000000643/1-486 VSANNIDLYK KLYHSDVCSS KTVVSLRCIE CGVSGKTRRQ SRIVGGSSAA bmy_13633T0/1-424 ---------- -----DVCSS KTVVSLRCIE CGVXGKTRRQ SRIVGGSSAA BACU004405/1-488 VSANNIDLYK KLYHSDVCSS KTVVSLRCIE CGVSGKTGRQ SRIVGGSSAA 301 350 ENSP00000381588/1-529 PGAWPWQVSL HVQNVHVCGG SIITPEWIVT AAHCVEKPLN NPWHWTAFAG ENSBTAP00000012036/1-490 SGEWPWQVSL HVQGIHVCGG SIITPEWIVT AAHCVEEPLN NPKIWVAFAG ENSTTRP00000000643/1-486 PGDWPWQVSL HVQGTHVCGG SIITPEWIVT AAHCVEEPLN NPKIWTAFAG bmy_13633T0/1-424 PGDWPWQVSL HVQGTHVCGG SIITPEWIVT AAHCVEQPLN NPKIWTAFAG BACU004405/1-488 PGDWPWQVSL HVQGTHVCGA SIITPEWIVT AAHCAEEPLN NPKIWTAFAG 351 400 ENSP00000381588/1-529 ILRQSFMFYG AGYQVEKVIS HPNYDSKTKN NDIALMKLQK PLTFNDLVKP ENSBTAP00000012036/1-490 ILKQSYMFYG SGYRVAKVIS HPNYDSKTKN NDIALMKLQT PLTFNDKVKP ENSTTRP00000000643/1-486 ILRQSFMFYG NGYRVAKVIS HPNYDSKTKN NDIALMKLQT PLTFNDRVKP bmy_13633T0/1-424 ILRQSFMFYG NGYRVAKVIS HPNYDSKTKN NDIALLKLQT PLTFN----- BACU004405/1-488 ILRQSFMFYG NGYRVAKVIS HPNYDSKTKN NDIALMKLQT PLTFNDRVKP 401 450 ENSP00000381588/1-529 VCLPNPGMML QPEQLCWISG WGATEEKGKT SEVLNAAKVL LIETQRCNSR ENSBTAP00000012036/1-490 VCLPNPGMML EPTQSCWISG WGATYEKGKT SDDLNAAKVH LIEPRKCNSK ENSTTRP00000000643/1-486 VCLPNPGMML EPTQACWISG WGSTYEKGKT SDRLNAAMVQ LIEPWRCDSK bmy_13633T0/1-424 ---------- ---------- -------GKT SDGLNAAMVQ LIEPWRCDSK BACU004405/1-488 VCLPNPGMML EPTQSCWISG WGSTYEKGKT SDGLNAAMVQ LIEPWRCDSK 451 500 ENSP00000381588/1-529 YVYDNLITPA MICAGFLQGN VDSCQGDSGG PLVTSKNNIW WLIGDTSWGS ENSBTAP00000012036/1-490 YMYDNLITPA MICAGYLRGT VDSCQGDSGG PLVTLKSSVW WLIGDTSWGS ENSTTRP00000000643/1-486 QVYSDLITPA MICAGYLQGT VDSCQGDSGG PLVTLKSSVW WLIGDTSWGS bmy_13633T0/1-424 HVYGDLIMPA MICAGYLQGT VDSCQGDSGG PLVTLKSSIW WLIGDTSWGS BACU004405/1-488 QVYGDLITPA MICAGYLQGT VDSCQGDSGG PLVTLKSSIW WLIGDTSWGS 501 550 ENSP00000381588/1-529 GCAKAYRPGV YGNVMVFTDW IYRQMRADG- -- ENSBTAP00000012036/1-490 GCAKAYRPGV YGNVTVFTDW IYQQMRANS- -- ENSTTRP00000000643/1-486 GCAKAYRPGV YGNVTVFTDW IYRQMRAGGL -- bmy_13633T0/1-424 GCAKAYRPGV YGNVTVFTDW IYQQMRVTFP SS BACU004405/1-488 GCAKAYRPGV YGNVTVFTDW IYQQMRVTFP SS