KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:31 2014 Check: 00 .. Name: bmy_11882T0/1-225 Len: 333 Check: 9281 Weight: 1.00 Name: ENSP00000382507/1-331 Len: 333 Check: 2726 Weight: 1.00 Name: ENSBTAP00000012043/1-331 Len: 333 Check: 9562 Weight: 1.00 Name: BACU002314/1-316 Len: 333 Check: 9301 Weight: 1.00 Name: ENSTTRP00000004671/1-333 Len: 333 Check: 6133 Weight: 1.00 // 1 50 bmy_11882T0/1-225 ---------- ---------- --MPNEREL- LALAELYEDE VKCKASKSDR ENSP00000382507/1-331 MAEGGGPE-- PGEQERRSSG PRPPSARDLQ LALAELYEDE VKCKSSKSNR ENSBTAP00000012043/1-331 MAEGGGGE-- AGEEEPRAAG PRPPSARDLQ LALAELYEDE VKCKASKSDR BACU002314/1-316 -MRGLGSG-- ---------- ----TAIYNR LALAELYEDE VKCKASKSDR ENSTTRP00000004671/1-333 MAEGGGGGGE AGEEGPRAVG PRPPSARDLQ LALAELYEDE VKCKASKSDR 51 100 bmy_11882T0/1-225 PHATAFKSPR TPPQSLLQVE ---------- ---------- ---------- ENSP00000382507/1-331 PKATVFKSPR TPPQRFYSSE HEYSGLNIVR PSTGKIVNEL FKEAREHGAV ENSBTAP00000012043/1-331 PKATAFKSPQ TAPQRFYSSE HECSGLHIVQ PSTGKIVNEL FREARQHGAV BACU002314/1-316 PHATAFKSPR TPPQRFYSSE HECSGLHIVR PSTGKIVNEL FKEAREHGAV ENSTTRP00000004671/1-333 PHATAFKSPR TTPQRFYSSE HECSGLHIVR PSTGKIVNEL FKEAREHGAV 101 150 bmy_11882T0/1-225 ---------G TDWVIPFVSG LNTSMEKLSC KIRFLVFFSY AQKVQILLKL ENSP00000382507/1-331 PLNEATRASG DDKSKSFTGG GYRLGSSFCK RSEYIYGENQ LQDVQILLKL ENSBTAP00000012043/1-331 PLNEATRASG DDKSKSFTGG GYRLGNSFCK QSEYIYGENQ LQDVQILLKL BACU002314/1-316 PLNEATRASG DDKSKSFTGG GYRLGNSFCK RSEYIYGETQ LQDVQILLKL ENSTTRP00000004671/1-333 PLNEATRASS DDKSKSFTGG GYRLGNSFCK RSEYIYGENQ LQDVQILLKL 151 200 bmy_11882T0/1-225 WSNGFSLDDG ELRPYSDPTN AQFLESVKRG ---------- ---------- ENSP00000382507/1-331 WSNGFSLDDG ELRPYNEPTN AQFLESVKRG EIPLELQRLV HGGQVNLDME ENSBTAP00000012043/1-331 WSNGFSLDDG ELRPYSDPTN AQFLESVKRG EIPLELQRLV HGGHLNLDME BACU002314/1-316 WSNGFSLDDG ELRPYSDPTN AQFLESVKRG EIPPELQHLV HRGHVNLDME ENSTTRP00000004671/1-333 WSNGFSLDDG ELRPYSDPTN AQFLESVKRG EIPLELQRLV HRGHVNLDME 201 250 bmy_11882T0/1-225 ---------- ---------- ------LTPE IVSTPSSPEE EEKSLLNAVV ENSP00000382507/1-331 DHQDQEYIKP RLRFKAFSGE GQKLGSLTPE IVSTPSSPEE EDKSILNAVV ENSBTAP00000012043/1-331 DHQDQEYVKP RLRFKAFSGE GQKLGSLTPE IVSTPSSPEE EEKSLFNAVV BACU002314/1-316 DHQDQEYVKP RLRFKAFSGE GQKLGSLTPE IVSTPSSPEE EEKSLLNAVV ENSTTRP00000004671/1-333 DHHDEEYIKP RLRFKAFSGE GQKLGSLTPE IVSTPSSPEE EEKSLLNAVV 251 300 bmy_11882T0/1-225 LIDDSVPTTK IQIRLADGSR LMQRFNSTHR ILDVRDFIVQ SRPEFATLDF ENSP00000382507/1-331 LIDDSVPTTK IQIRLADGSR LIQRFNSTHR ILDVRNFIVQ SRPEFAALDF ENSBTAP00000012043/1-331 LIDDSMPTTK IQIRLADGSR LIQRFNSTHR ILDVRDFIVQ SRPEFATLDF BACU002314/1-316 LIDDSVPTTK IQIRLADGSR LIQRFNSTHR ILDVRDFIVQ SRPEFATLDF ENSTTRP00000004671/1-333 LIDDSVPTTK IQIRLADGSR LIQRFNSTHR ILDVRDFIVQ SRPEFAALDF 301 350 bmy_11882T0/1-225 ILVTSFPNKE LTDESLTLQE ADILNTVILQ QLK ENSP00000382507/1-331 ILVTSFPNKE LTDESLTLLE ADILNTVLLQ QLK ENSBTAP00000012043/1-331 ILVTSFPNKV LTDESLTLQE ADILNTVILQ QLK BACU002314/1-316 ILVTSFRNKE LTDESLTLQE ADILNTVILQ QLK ENSTTRP00000004671/1-333 ILVTSFPNKE LTDESLTLQE ADILNTVILQ QLK