KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:34 2014 Check: 00 .. Name: ENSTTRP00000015625/1-845 Len: 972 Check: 8037 Weight: 1.00 Name: ENSP00000320886/1-852 Len: 972 Check: 29 Weight: 1.00 Name: bmy_00368T0/1-894 Len: 972 Check: 933 Weight: 1.00 Name: BACU012024/1-840 Len: 972 Check: 2074 Weight: 1.00 Name: ENSBTAP00000012060/1-854 Len: 972 Check: 3875 Weight: 1.00 // 1 50 ENSTTRP00000015625/1-845 ---------- ---------- ---------- ---------- ---------- ENSP00000320886/1-852 ---------- ---------- ---------- ---------- ---------- bmy_00368T0/1-894 SAGAPGQRSH TWRIDYANLS QPRPLPHATR LRPLERPIXV GGRGYANEPA BACU012024/1-840 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012060/1-854 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000015625/1-845 ---------- ---------- -TAGALAGLV AGLQGPRVVP SPDSDSDTDS ENSP00000320886/1-852 ---------- ---------- -MAGALAGLA AGLQVPRVAP SPDSDSDTDS bmy_00368T0/1-894 WPQGLRGQLH LAPGEAAAAM ATAGALAGLV AGLQGPRVVP SPDSDSDTDS BACU012024/1-840 ---------- ---------M ATAGALAGLV AGLQGPRVVP SPDSDSDTDS ENSBTAP00000012060/1-854 ---------- ---------- -MAGALAGLV AGLQGPRVVP SPDSDSDTDS 101 150 ENSTTRP00000015625/1-845 EDPSTRRSAG GLLRSQVIHS GHFMVSSPHS DSLTRRRDQE GPLGLADFGP ENSP00000320886/1-852 EDPSLRRSAG GLLRSQVIHS GHFMVSSPHS DSLPRRRDQE GSVGPSDFGP bmy_00368T0/1-894 EDPSTRRSAG GLLRSQVIHS GHFMVSSPHS DSLTRRRDPE GPLGLADFGP BACU012024/1-840 EDPSTRRSAG GLLRSQVIHS GHFMVSSPHS DSLTRRRDQE GPLGLADFGP ENSBTAP00000012060/1-854 EDPNTRRSAG GLLRSQVIHS GHFMVSSPHS DSLTRRRDQE GSLGHADFGP 151 200 ENSTTRP00000015625/1-845 RSIDPTLTRL FECMSLAYSG KLVSPKWKNF KGLKLLCRDK IRLNNAIWRA ENSP00000320886/1-852 RSIDPTLTRL FECLSLAYSG KLVSPKWKNF KGLKLLCRDK IRLNNAIWRA bmy_00368T0/1-894 RSIDPTLTRL FECMSLAYSG KLVSPKWKNF KGLKLLCRDK IRLNNAIWRA BACU012024/1-840 RSIDPTLTRL FECMSLAYSG KLVSPKWKNF KGLKLLCRDK IRLNNAIWRA ENSBTAP00000012060/1-854 RSIDPTLTRL FECMSLAYSG KLVSPKWKNF KGLKLLCRDK IRLNNAIWRA 201 250 ENSTTRP00000015625/1-845 WYIQYVERRK SPVCGFVTPL QGPEADEHRK PEAVV-EGNY -KRRIEVVMR ENSP00000320886/1-852 WYIQYVKRRK SPVCGFVTPL QGPEADAHRK PEAVVLEGNY WKRRIEVVMR bmy_00368T0/1-894 WYIQYVERRK SPVCGFVTPL QGPEADEHRK PEAVVLEGNY WKRRIEVVMR BACU012024/1-840 WYIQYVERRK SPVCGFVTPL QGPEADEHRK PEAVVLEGNY WKRRIEVVMR ENSBTAP00000012060/1-854 WYIQYVERRK SPVCGFVTPL QGPEADEHRK PQAVVLEGNY WKRRIEVVMR 251 300 ENSTTRP00000015625/1-845 EYHKWRIYYK KRLRKSSREG DLLAPKQVEG -WQPPERWCE QLFTSVVPVL ENSP00000320886/1-852 EYHKWRIYYK KRLRKPSRED DLLAPKQAEG RWPPPEQWCK QLFSSVVPVL bmy_00368T0/1-894 EYHKWRIYYK KRLRKSSREG DLLAPKQVEG GWQPPERWCE QLFTSVVPVL BACU012024/1-840 EYHKWRIYYK KR-------- -------VEG GWQPPERWCE QLFTSVVPVL ENSBTAP00000012060/1-854 EYHKWRIYYK KRLRKSSREG DLLAPKQAEV GWQPPERWCE QLFTSVVPVL 301 350 ENSTTRP00000015625/1-845 LAGPEEETGG RQLLDLDCFL SDXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000320886/1-852 LGDPEEEPGG RQLLDLNCFL SDISDTLFTM TQSGPSPLQL PPEDAYVGNA bmy_00368T0/1-894 LAGPEEETGG RQLLDLDCFL SDISDTLFTM TQPGPTPLQL PPEDAYVGNA BACU012024/1-840 LAGPEEETGG RQLLDLDCFL SDISDTLFTM TQPGPTPLQL PPEDAYVGNA ENSBTAP00000012060/1-854 LGGPEEEPSG RQLLDLNCFL SDISDTLFTM TQPTPTPLQL PPEDAYVGNA 351 400 ENSTTRP00000015625/1-845 XXXXXXXXXX XXXXXXXXXX XXFFTNYRPP QT-TPSSFLE PPSFGPMADP ENSP00000320886/1-852 DMIQPDLTPL QPSLDDFMDI SDFFTNSRLP QPPMPSNFPE PPSFSPVVDS bmy_00368T0/1-894 DMIQPDLTPL QPSLDDFMEI SG-------- ---------- --GAGP--SP BACU012024/1-840 DMIQPDLTPL QPSLDDFMEI SDFFTNYRPP QTPTTSSFLE PPSFGPMADP ENSBTAP00000012060/1-854 DMIQPDLTPL QPSLDDFMEI SDFFTNYRPP QTPTPSNFPE PHGFGPMADP 401 450 ENSTTRP00000015625/1-845 GLSSGTLGSE VPSACSGMTH LSGHNRLQXX XXXXXXXXXX XXXXXXXXXX ENSP00000320886/1-852 LFSSGTLGPE VPPASSAMTH LSGHSRLQAR NSCPGPLDSS AFLSSDFLLP bmy_00368T0/1-894 W--------- ---------- --------AR SSCPGPLDSS AFLSSDFLLP BACU012024/1-840 VLSSGILGSE VPSACSGMTH LSGHNRLQAR SSCPGPLDSS AFLSSDFLLP ENSBTAP00000012060/1-854 ILGSGILGSE VPPACSGMTH LSGHNRLQAR SSCPGSLDSS TYLNSDFLLP 451 500 ENSTTRP00000015625/1-845 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000320886/1-852 EDPKPRLPPP PVPPPLLHYP PPAKVPGLEP CPPPPFPPMA PPTALLQEEP bmy_00368T0/1-894 EDPKPKLPPT PAGPPLLQYP SSAKGLGLEP CAPPPFPPVA PLPAMLQEEP BACU012024/1-840 EDPKPKLPPT PARPPQLQYP SPAKGLGLEP CAPPPFPPVA PLPAMLQEEP ENSBTAP00000012060/1-854 EDPKPKLPPT PAPPPLLQYP SPAKGLGLEP CPPPPFPPMA PPPALLQEEP 501 550 ENSTTRP00000015625/1-845 XXXXXXXXX- ---XXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000320886/1-852 LFSPRFPFP- --TVPPAPGV SPLPAPAAFP PTPQSVPSPA PTPFPIELLP bmy_00368T0/1-894 LFSPRFSFP- --PVPPAPGV SPPSAPMAFA PTPPLGPGPA PAPFPIDLLP BACU012024/1-840 LFSPRFSFPX XXPVPPAPGV SPPSAPTAFA PTPLLGPGPA PAPFPIDLLP ENSBTAP00000012060/1-854 LFSPRFAFP- --AIPPAPGV SGLSAPTAFP PTPQ--PGPG PAPFPIDLLP 551 600 ENSTTRP00000015625/1-845 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX X------XXX ENSP00000320886/1-852 LGYSEPAFGP CFSM-----P RGKPPAPSPR GQKASPPTLA PATASPPTTA bmy_00368T0/1-894 SGYSEPLFGP HFTVPQGTRP RGKPPTQSPR GRRPSPPTLA P------ATA BACU012024/1-840 SGYSEPPFGP HFTVPQGTRP RGKPPTQSPR GRRPSPPTLA P------ATA ENSBTAP00000012060/1-854 SGYSETPFGP HFLVPQGTRP RGKPPAPTPR GRKPGAPAVA PATASPTATA 601 650 ENSTTRP00000015625/1-845 XXXXXXXXXX XXXXXXXXXX XXXX------ ------XXXX XXXXXXXXXX ENSP00000320886/1-852 GSNNPCLTQL LTAAKPEQAL EPPL------ ------VSST LLRSPG--SP bmy_00368T0/1-894 GGNNPCLAQL LTAGELGRGL GDQMRERGAC GIRGWRLRGR LSRRAGWQGM BACU012024/1-840 GGNNPCLAQL LTAAKPEQAL EPAL------ ------VSSA LLRSPG--SP ENSBTAP00000012060/1-854 GSNNPCLTQL LTAAKPEQAL EPPL------ ------VSSA LLRPPG--SP 651 700 ENSTTRP00000015625/1-845 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000320886/1-852 QETVPEFPCT FLPPTPAPTP PRPPPGPATL APSRPLLVPK AERLSPPAPS bmy_00368T0/1-894 RGLGPE-PKS GVGCEEGRDG VLGDDGMGAP AALTP----- -EQALEPA-- BACU012024/1-840 QEIVPEFPCT FFPPTPAPTP PRPPPGPATL APPRPLIVPK AERLSPPAPS ENSBTAP00000012060/1-854 QETLPEFPCT FFPPTPAPTP PRLPPGSATP APPRPLIVPK VERLSPPAPS 701 750 ENSTTRP00000015625/1-845 XGERRLSGEL NSLPGQGTLS TCISSPQRIL SRGH-PDNKT ENRRITHISA ENSP00000320886/1-852 GSERRLSGDL SSMPGPGTLS VRVSPPQPIL SRGRPDSNKT ENRRITHISA bmy_00368T0/1-894 ----HVSSAL LRSPGSPAL- -----PRPLL GSPHFLPPQT ETRRITHISA BACU012024/1-840 GGERRLSGEL NSLPGPGTLS VCISSPQRVL SRGH-PDNKT ETRRITHISA ENSBTAP00000012060/1-854 GGERRLSAEL TSLPGPGALS ICISPPQPML SRGR-PDSKT ENRRITHISA 751 800 ENSTTRP00000015625/1-845 EQKRRFNIKL GFDTLHGLVS TLSTQPNLKM SKATTLQKTA EYIAMLQQER ENSP00000320886/1-852 EQKRRFNIKL GFDTLHGLVS TLSAQPSLKV SKATTLQKTA EYILMLQQER bmy_00368T0/1-894 EQKRRFNIKL GFDTLHGLVS TLSTQPSLKM SKATTLQKTA EYIAMLQQER BACU012024/1-840 EQKRRFNIKL GFDTLHGLVS TLSTQPNLKM SKATTLQKTA EYIAMLQQER ENSBTAP00000012060/1-854 EQKRRFNIKL GFDTLHGLVS TLSTQPNLKM SKATTLQKTA EYIAMLQQER 801 850 ENSTTRP00000015625/1-845 AAKQEEAQQL RDQIEALNAA I--------- ---------- --------NL ENSP00000320886/1-852 AGLQEEAQQL RDEIEELNAA I--------- ---------- --------NL bmy_00368T0/1-894 AAKQEEAQQL RDQIEELNAA IKWVGGALQA LGQGACGLTP RPDLPRAPSL BACU012024/1-840 AAKQEEAQQL RDQIEELNAA I--------- ---------- --------NL ENSBTAP00000012060/1-854 AAKQEEAQQL RDQIEELNAA I--------- ---------- --------NL 851 900 ENSTTRP00000015625/1-845 CQQQLPATGV PITHQRFDQM RDMFDDYVRT RTLHNWKFWV FSILIRPLFE ENSP00000320886/1-852 CQQQLPATGV PITHQRFDQM RDMFDDYVRT RTLHNWKFWV FSILIRPLFE bmy_00368T0/1-894 CQQQLPATGV PITHQRFDQM RDMFDDYVRT RTLHNWKFW- FSILIRPLFE BACU012024/1-840 CQQQLPATGV PITHQRFDQM RDMFDDYVRT RTLHNWKFWV FSILIRPLFE ENSBTAP00000012060/1-854 CQQQLPATGV PITHQRFDQM RDMFDDYVRT RTLHNWKFWV FSILIRPLFE 901 950 ENSTTRP00000015625/1-845 SFNGMVSTAS LQSLRQTSLA -LD-YCSLPA LRPTVLNSLR QLSTSTSILT ENSP00000320886/1-852 SFNGMVSTAS VHTLRQTSLA WLDQYCSLPA LRPTVLNSLR QLGTSTSILT bmy_00368T0/1-894 SFNGMVSTAS LQSLRQTSLA WLDQYCSLPA LRPTVLNSLR QLSTSTSILT BACU012024/1-840 SFNGMVSTAS LQSLRQTSLA WLDQYCSLPA LRPTVLNSLR QLSTSTSILT ENSBTAP00000012060/1-854 SFNGMVSTAS LQSLRQTSLA WLDQYCSLPA LRPTVLNSLR QLSTSTSILT 951 1000 ENSTTRP00000015625/1-845 DPDCIPEQAT RAVTEGTLGK SV ENSP00000320886/1-852 DPGRIPEQAT RAVTEGTLGK PL bmy_00368T0/1-894 DPDCIPEQAT RAVTEGTLGK SL BACU012024/1-840 DPDCIPEQAT RAVTEGTLGK SL ENSBTAP00000012060/1-854 DPDCIPEQAT RAVTEGTLGK SL