KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:35 2014 Check: 00 .. Name: bmy_12481T0/1-1063 Len: 1510 Check: 2469 Weight: 1.00 Name: BACU012773/1-1389 Len: 1510 Check: 5839 Weight: 1.00 Name: ENSTTRP00000016274/1-1028 Len: 1510 Check: 5441 Weight: 1.00 Name: ENSP00000418563/1-1029 Len: 1510 Check: 7047 Weight: 1.00 Name: ENSBTAP00000012063/1-1035 Len: 1510 Check: 9923 Weight: 1.00 // 1 50 bmy_12481T0/1-1063 MTNTGSHVGK LLLNFAKSAV DYSVLHAPQA GSAEIQSFGA RLARAAAAAE BACU012773/1-1389 MTNTGSHVAK LLLNFAKSAV DYSDLHAPQA GSAEIQSFGA RLARAAAAAE ENSTTRP00000016274/1-1028 ---------- ---------- ---------- ---------- ---------- ENSP00000418563/1-1029 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012063/1-1035 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_12481T0/1-1063 GGAKLKMADK TPGGSQKASS KTRSSDVHSS GSSDAHMDAS GPSDSDMPSR BACU012773/1-1389 GGAKLKMADK TPGGSQKASS KTRSSDVHSS GSSDAHMDAS GPSDSDMPSR ENSTTRP00000016274/1-1028 ------MADK TPGGSQKASS KTRSSDVHSS GSSDAHMDAS GPSDSDMPSR ENSP00000418563/1-1029 ------MADK TPGGSQKASS KTRSSDVHSS GSSDAHMDAS GPSDSDMPSR ENSBTAP00000012063/1-1035 ------MADK TPGGSQKASS KTRSSDVHSS GSSDAHMDAS GPSDSDMPSR 101 150 bmy_12481T0/1-1063 TRPKSPRKHN YRNESARENV CDSPHQNLSR PLLENKLKAF SIGKMSTAKR BACU012773/1-1389 TRPKSPRKHN YRNESARENV CDSPHQNLSR PLLENKLKAF SIGKMSTAKR ENSTTRP00000016274/1-1028 TRPKSPRKHN YRNESTRENV CDSPHQNLSR PLLENKLKAF SIGKMSTAKR ENSP00000418563/1-1029 TRPKSPRKHN YRNESARESL CDSPHQNLSR PLLENKLKAF SIGKMSTAKR ENSBTAP00000012063/1-1035 TRPKSPRKHN YRNESARENV SDSPHQNLSR PLLENKLKAF SIGKMSTAKR 151 200 bmy_12481T0/1-1063 TLSKKEQEEL KKKEDEKAAA EIYEEFLAAF EGSDGNKVKT FVRGGVVNAA BACU012773/1-1389 TLSKKEQEEL KKKEDEKAAA EIYEEFLAAF EGSDGNKVKT FVRGGVVNAA ENSTTRP00000016274/1-1028 TLSKKEQEEL KKKEDEKAAA EIYEEFLAAF EGSDGNKVKT FVRGGVVNAA ENSP00000418563/1-1029 TLSKKEQEEL KKKEDEKAAA EIYEEFLAAF EGSDGNKVKT FVRGGVVNAA ENSBTAP00000012063/1-1035 TLSKKEQEEL KKKEDEKAAA EIYEEFLAAF EGSDGNKVKT FVRGGVVNAA 201 250 bmy_12481T0/1-1063 KEEHETDEKR GKIYKPSSRF ADQKNPPNQS SNERPPSLLV IETKKPPLKK BACU012773/1-1389 KEEHETDEKR GKIYKPSSRF ADQKNPPNQS SNERPPSLLV IETKKPPLKK ENSTTRP00000016274/1-1028 KEEHETDEKR GKIYKPSSRF ADQKNPPNQS SNERPPSLLV IETKKPP-EE ENSP00000418563/1-1029 KEEHETDEKR GKIYKPSSRF ADQKNPPNQS SNERPPSLLV IETKKPPLKK ENSBTAP00000012063/1-1035 KEEHETDEKR GKIYKPSSRF ADQKNPPNQS SNERPPSLLV IETKKPPLKK 251 300 bmy_12481T0/1-1063 GEKEKKKSNL ELFKEELKQI QEERDERHKT KGRLSRFEPP QSDSDGQRRS BACU012773/1-1389 GEKEKKKSNL ELFKEELKQI QEERDERHKT KGRLSRFEPP QSDSDGQRRS ENSTTRP00000016274/1-1028 GEKEKKKSNL ELFKEELKQI QEERDERHKT KGRLSRFEPP QSDSDGQRRS ENSP00000418563/1-1029 GEKEKKKSNL ELFKEELKQI QEERDERHKT KGRLSRFEPP QSDSDGQRRS ENSBTAP00000012063/1-1035 GEKEKKKSNL ELFKEELKQI QEERDERHKT KGRLSRFEPP QSDSDGQRRS 301 350 bmy_12481T0/1-1063 MDAPSRRNRS SGVLDDYAPG SHDVGDPSTT NLYLGNINPQ MNEEMLCQEF BACU012773/1-1389 ---------- --ILDDYAPG SHDVGDPSTT NLYLGNINPQ MNEEMLCQEF ENSTTRP00000016274/1-1028 MDAPSRRNRS SGVLDDYAPG SHDVGDPSTT NLYLGNINPQ MNEEMLCQEF ENSP00000418563/1-1029 MDAPSRRNRS SGVLDDYAPG SHDVGDPSTT NLYLGNINPQ MNEEMLCQEF ENSBTAP00000012063/1-1035 MDAPSRRNRS SGVLDDYAPG SHDVGDPSTT NLYLGNINPQ MNEEMLCQEF 351 400 bmy_12481T0/1-1063 GRFGPLASVK IMWPRTDEER ARERNCGFVA FMNRRDAERA LKNLNGKMIM BACU012773/1-1389 GRFGPLASVK IMWPRTDEER ARERNCGFVA FMNRRDAERA LKNLNGKMIM ENSTTRP00000016274/1-1028 GRFGPLASVK IMWPRTDEER ARERNCGFVA FMNRRDAERA LKNLNGKMIM ENSP00000418563/1-1029 GRFGPLASVK IMWPRTDEER ARERNCGFVA FMNRRDAERA LKNLNGKMIM ENSBTAP00000012063/1-1035 GRFGPLASVK IMWPRTDEER ARERNCGFVA FMNRRDAERA LKNLNGKMIM 401 450 bmy_12481T0/1-1063 SFEMKLGWGK AVPIPPHPIY IPPSMMEHTL PPPPSGLPFN AQPRERLKNP BACU012773/1-1389 SFEMKLGWGK AVPIPPHPIY IPPSMMEHTL PPPPSGLPFN AQPRERLKNP ENSTTRP00000016274/1-1028 SFEMKLGWGK AVPIPPHPIY IPPSMMEHTL PPPPSGLPFN AQPRERLKNP ENSP00000418563/1-1029 SFEMKLGWGK AVPIPPHPIY IPPSMMEHTL PPPPSGLPFN AQPRERLKNP ENSBTAP00000012063/1-1035 SFEMKLGWGK AVPIPPHPIY IPPSMMEHTL PPPPSGLPFN AQPRERLKNP 451 500 bmy_12481T0/1-1063 NAPMLPPPKN KEDFEKVFGI LLFSFLPFFL FQHNVKAEER IHAVDISVTS BACU012773/1-1389 NAPMLPPPKN KEDFEKTLSQ AIVKVV---- ----IPTERN LLAL---IHR ENSTTRP00000016274/1-1028 NAPMLPPPKN KEDFENTLSQ AIVKVV---- ----IPTERN LLAL---IHR ENSP00000418563/1-1029 NAPMLPPPKN KEDFEKTLSQ AIVKVV---- ----IPTERN LLAL---IHR ENSBTAP00000012063/1-1035 NAPMLPPPKN KEDFEKTLSQ AIVKVV---- ----IPTERN LLAL---IHR 501 550 bmy_12481T0/1-1063 LFKTVV--GF FFPLEFARPN TSNDRVCCTF LFENQTPAHV YYRWKLYSIL BACU012773/1-1389 MIEFVVREGP MFEAMIMNRE INNPMF--R- ---------- ---------- ENSTTRP00000016274/1-1028 MIEFVVREGP MFEAMIMNRE INNPMF--RF LFENQTPAHV YYRWKLYSIL ENSP00000418563/1-1029 MIEFVVREGP MFEAMIMNRE INNPMF--RF LFENQTPAHV YYRWKLYSIL ENSBTAP00000012063/1-1035 MIEFVVREGP MFEAMIMNRE INNPMF--RF LFENQTPAHV YYRWKLYSIL 551 600 bmy_12481T0/1-1063 QASIINYFVN FDSEGDSPTK WRTEDFRMFK NGSFWRPPPL NPYLHGMSEE BACU012773/1-1389 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016274/1-1028 Q--------- ----ANSPTK WRTEDFRMFK NGSFWRPPPL NPYLHGMSEE ENSP00000418563/1-1029 Q--------- ----GDSPTK WRTEDFRMFK NGSFWRPPPL NPYLHGMSEE ENSBTAP00000012063/1-1035 Q--------- ----GDSPTK WRTEDFRMFK NGSFWRPPPL NPYLHGMSEE 601 650 bmy_12481T0/1-1063 QETEAFVEEP SKKGALKEEQ RDKLEEILRG LTPRKNDIGD AMVFCLNNAE BACU012773/1-1389 ---------- ---------Q RDKLEEILRG LTPRKNDIGD AMVFCLNNAE ENSTTRP00000016274/1-1028 QETEAFVEEP SKKGALKEEQ RDKLEEILRG LTPRKNDIGD AMVFCLNNAE ENSP00000418563/1-1029 QETEAFVEEP SKKGALKEEQ RDKLEEILRG LTPRKNDIGD AMVFCLNNAE ENSBTAP00000012063/1-1035 QETEAFVEEP SKKGALKEEQ RDKLEEILRG LTPRKNDIGD AMVFCLNNAE 651 700 bmy_12481T0/1-1063 AAEEIVDCIT ESLSILKTPL PKKIARLYLV SDVLYNSSAK VANASYYRKF BACU012773/1-1389 AAEEIVDCIT ESLSILKTPL PKKIARLYLV SDVLYNSSAK VANASYYRKF ENSTTRP00000016274/1-1028 AAEEIVDCIT ESLSILKTPL PKKIARLYLV SDVLYNSSAK VANASYYRKF ENSP00000418563/1-1029 AAEEIVDCIT ESLSILKTPL PKKIARLYLV SDVLYNSSAK VANASYYRKF ENSBTAP00000012063/1-1035 AAEEIVDCIT ESLSILKTPL PKKIARLYLV SDVLYNSSAK VANASYYRKF 701 750 bmy_12481T0/1-1063 FETKLCQIFS DLNATYRTIQ GHLQSENFKQ RVMTCFRAWE DWAIYPEPFL BACU012773/1-1389 FETKLCQIFS DLNATYRTIQ GHLQSENFKQ RVMTCFRAWE DWAIYPEPFL ENSTTRP00000016274/1-1028 FETKLCQIFS DLNATYRTIQ GHLQSENFKQ RVMTCFRAWE DWAIYPEPFL ENSP00000418563/1-1029 FETKLCQIFS DLNATYRTIQ GHLQSENFKQ RVMTCFRAWE DWAIYPEPFL ENSBTAP00000012063/1-1035 FETKLCQIFS DLNATYRTIQ GHLQSENFKQ RVMTCFRAWE DWAIYPEPFL 751 800 bmy_12481T0/1-1063 IKLQNIFLGL VNIIEEKETE DVPDDLDGAP IEEELDGAPL EDVDGIPIDA BACU012773/1-1389 IKLQNIFLGL VNIIEEKETE DVPDDLDGAP IEEELDGAPL EDVDGIPIDA ENSTTRP00000016274/1-1028 IKLQNIFLGL VNIIEEKETE DVPDDLDGAP IEEELDGAPL EDVDGIPIDA ENSP00000418563/1-1029 IKLQNIFLGL VNIIEEKETE DVPDDLDGAP IEEELDGAPL EDVDGIPIDA ENSBTAP00000012063/1-1035 IKLQNIFLGL VNIIEEKEAE DVPDDLDGAP IEEELDGAPL EDVDGIPIDA 801 850 bmy_12481T0/1-1063 TPIDDLDGVP IKSLDDDLDG VP-------- ---------- ---------- BACU012773/1-1389 TPIDDLDGVP IKSLDDDLDG VPLDATEDAK KNEPIFKVAP SKWEAVDESE ENSTTRP00000016274/1-1028 TPIDDLDGVP IKSLDDDLDG VPLDATEDSK KNEPIFKVAP SKWEAVDESE ENSP00000418563/1-1029 TPIDDLDGVP IKSLDDDLDG VPLDATEDSK KNEPIFKVAP SKWEAVDESE ENSBTAP00000012063/1-1035 TPIDDLDGVP IKSLDDDLDG VPLDATEDSK KNEPIFKVAP SKWEAVDESE 851 900 bmy_12481T0/1-1063 ----SVTTSK WELFDQHEES EEEENQNQEE ESEDEEDTQS SKSEEHHLYS BACU012773/1-1389 LEAQAVTTSK WELFDQHEES EEEENQNQEE ESEDEEDTQS SKSEEHHLYS ENSTTRP00000016274/1-1028 LEAQAVTTSK WELFDQHEES EEEENQNQEE ESEDEEDTQS SKSEEHHLYS ENSP00000418563/1-1029 LEAQAVTTSK WELFDQHEES EEEENQNQEE ESEDEEDTQS SKSEEHHLYS ENSBTAP00000012063/1-1035 LEAQAVTTSK WELFDQHEES EEEENQNQEE ESEDEEDTQS SKSEEHHLYS 901 950 bmy_12481T0/1-1063 NPIKEEMTES KFSKYSEM-- ---------- --IMKFQDEL ESGKRPKKPG BACU012773/1-1389 NPIKEEMTES KFSKYSEMSE EKRAKLREIE LKVMKFQDEL ESGKRPKKPG ENSTTRP00000016274/1-1028 NPIKEEMTES KFSKYSEMSE EKRAKLREIE LKVMKFQDEL ESGKRPKKPG ENSP00000418563/1-1029 NPIKEEMTES KFSKYSEMSE EKRAKLREIE LKVMKFQDEL ESGKRPKKPG ENSBTAP00000012063/1-1035 NPIKEEMTES KFSKYSEMSE EKRAKLREIE LKVMKFQDEL ESGKRPKKAG 951 1000 bmy_12481T0/1-1063 QSFQEQVEHY RDKLLQR--- ---EKEKELE RERERDKKDK EKLESRSKDK BACU012773/1-1389 QSFQEQVEHY RDKLLQR--- ---EKEKELE RERERDKKDK EKLESRSKDK ENSTTRP00000016274/1-1028 QSFQEQVEHY RDKLLQR--- ---EKEKELE RERERDKKDK EKLESRSKDK ENSP00000418563/1-1029 QSFQEQVEHY RDKLLQR--- ---EKEKELE RERERDKKDK EKLESRSKDK ENSBTAP00000012063/1-1035 QSFQEQVEHY RDKLLQRKKK KKQEKEKELE RERERDKKDK EKLESRSKDK 1001 1050 bmy_12481T0/1-1063 KEKDECTPTR KERKRRHSTS PSPSRSSSGR RVKSPSPKSE RSERSERSHK BACU012773/1-1389 KEKDECTPTR KERKRRHSTS PSPSRSSSGR RVKSPSPKSE RSERSERSHK ENSTTRP00000016274/1-1028 KEKDECTPTR KERKRRHSTS PSPSRSSSGR RVKSPSPKSE RSERSERSHK ENSP00000418563/1-1029 KEKDECTPTR KERKRRHSTS PSPSRSSSGR RVKSPSPKSE RSERSERSHK ENSBTAP00000012063/1-1035 KEKDECTPTR KERKRRHSTS PSPSRSSSGR RVKSPSPKSE RSERSERSHK 1051 1100 bmy_12481T0/1-1063 ESSRSRSSHK DSPRDVSKKA KR-------- ---------- ---------- BACU012773/1-1389 ESSRSRSSHK DSPRDVSKKA KRIPLTKVPE RKLIKQNPNV NSLNKRQFSV ENSTTRP00000016274/1-1028 ESSRSRSSHK DSPRDVSKKA KR-------- ---------- ---------- ENSP00000418563/1-1029 ESSRSRSSHK DSPRDVSKKA KR-------- ---------- ---------- ENSBTAP00000012063/1-1035 ESSRSRSSHK DSPRDVSKKA KR-------- ---------- ---------- 1101 1150 bmy_12481T0/1-1063 ---------- ---------- ---------- ---------- ---------- BACU012773/1-1389 KKETRVDGGC FDGAAPILSL HLNQLLRAPP GNGTRGTGDG GDKRQLVYVF ENSTTRP00000016274/1-1028 ---------- ---------- ---------- ---------- ---------- ENSP00000418563/1-1029 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012063/1-1035 ---------- ---------- ---------- ---------- ---------- 1151 1200 bmy_12481T0/1-1063 ---------- ---------- ---------- ---------- ---------- BACU012773/1-1389 TTWRSGSSFF GELFNQNPEV FFLYEPVWHV WQKLYPGDAV SLQGAARDML ENSTTRP00000016274/1-1028 ---------- ---------- ---------- ---------- ---------- ENSP00000418563/1-1029 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012063/1-1035 ---------- ---------- ---------- ---------- ---------- 1201 1250 bmy_12481T0/1-1063 ---------- ----SPSGS- ---------- ---------- ---------- BACU012773/1-1389 SALYRCDLSV FQLYSPAGSG GRNLTTLGIF GAATNKVVCS SPLCPAYRKE ENSTTRP00000016274/1-1028 ---------- ----SPSGS- ---------- ---------- ---------- ENSP00000418563/1-1029 ---------- ----SPSGS- ---------- ---------- ---------- ENSBTAP00000012063/1-1035 ---------- ----SPSGS- ---------- ---------- ---------- 1251 1300 bmy_12481T0/1-1063 ---------- ---------- ---------- ---------- ---------- BACU012773/1-1389 VVGLVDDRVC KKCPPQRLAR FEEECRKYRT LVIKGVRVFD VAVLAPLLRD ENSTTRP00000016274/1-1028 ---------- ---------- ---------- ---------- ---------- ENSP00000418563/1-1029 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012063/1-1035 ---------- ---------- ---------- ---------- ---------- 1301 1350 bmy_12481T0/1-1063 ---------- -RTPK----- --RSRRS--- ------RSRS PKK------- BACU012773/1-1389 PALDLKVIHL VRDPRAVASS RIRSRHGLIR ESLQVVRSRD PRAHRMPFLE ENSTTRP00000016274/1-1028 ---------- -RTPK----- --RSRRS--- ------RSRS PKK------- ENSP00000418563/1-1029 ---------- -RTPK----- --RSRRS--- ------RSRS PKK------- ENSBTAP00000012063/1-1035 ---------- -RTPK----- --RSRRS--- ------RSRS PKK------- 1351 1400 bmy_12481T0/1-1063 ---------- ---------- ---------- ---------- ---------- BACU012773/1-1389 AAGHKLGAKK ESMGGPADYH ALGAMEVICH SMAKTLQTAL QPPDWLQGHY ENSTTRP00000016274/1-1028 ---------- ---------- ---------- ---------- ---------- ENSP00000418563/1-1029 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012063/1-1035 ---------- ---------- ---------- ---------- ---------- 1401 1450 bmy_12481T0/1-1063 ---------- ---------- ---------- ---------- -SGKKSR--- BACU012773/1-1389 LVVRYEDLVG DPVKTLRRVY DFVGLLVSPE MEQFALNMTS GSGSSSKPFV ENSTTRP00000016274/1-1028 ---------- ---------- ---------- ---------- -SGKKSR--- ENSP00000418563/1-1029 ---------- ---------- ---------- ---------- -SGKKSR--- ENSBTAP00000012063/1-1035 ---------- ---------- ---------- ---------- -SGKKSR--- 1451 1500 bmy_12481T0/1-1063 ------SQSR SPHRSHKKSK KNKH------ ---------- ---------- BACU012773/1-1389 VSARNATQAA NAWRTALTFQ QIKQVEEFCY QPMAVLGYER VNSPEEVRDL ENSTTRP00000016274/1-1028 ------SQSR SPHRSHKKSK KNKH------ ---------- ---------- ENSP00000418563/1-1029 ------SQSR SPHRSHKKSK KNKH------ ---------- ---------- ENSBTAP00000012063/1-1035 ------SQSR SPHRSHKKSK KNKH------ ---------- ---------- 1501 1550 bmy_12481T0/1-1063 ---------- BACU012773/1-1389 SKTLLRKPRL ENSTTRP00000016274/1-1028 ---------- ENSP00000418563/1-1029 ---------- ENSBTAP00000012063/1-1035 ----------