KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:36 2014 Check: 00 .. Name: ENSP00000368981/1-401 Len: 543 Check: 3542 Weight: 1.00 Name: ENSBTAP00000012065/1-430 Len: 543 Check: 2653 Weight: 1.00 Name: ENSTTRP00000012778/1-400 Len: 543 Check: 2382 Weight: 1.00 Name: bmy_00854T0/1-455 Len: 543 Check: 1621 Weight: 1.00 Name: BACU005136/1-383 Len: 543 Check: 1334 Weight: 1.00 // 1 50 ENSP00000368981/1-401 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012065/1-430 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012778/1-400 ---------- ---------- ---------- ---------- ---------- bmy_00854T0/1-455 MRTFYPTGAH RPDAAFSARP GTTGPPRRLL SRAPELKAAA RDVTAPPPSE BACU005136/1-383 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000368981/1-401 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012065/1-430 ---------- ---------- ---------- ---------- --------MR ENSTTRP00000012778/1-400 ---------- ---------- ---------- ---------- ---------- bmy_00854T0/1-455 AGGRRGGGAA RLRTRRRTHR RKWCAGAGDT STWRGLGGRR GTCRSGRGGE BACU005136/1-383 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000368981/1-401 ---------- ---------- -------MDL TQQAKDIQNI TVQETNKNNS ENSBTAP00000012065/1-430 APGEEAAAAA AAEAEVASAG VGEEETQEDL AQQAEGGLN- KGEETNKDNF ENSTTRP00000012778/1-400 ---------- ---------- -------MGL AQQAKERLN- KGEETNKDNF bmy_00854T0/1-455 AGGDGDGPGE GETLRLAEAP PGLGSPFQGL AQQAKERLN- KGEETNKDNF BACU005136/1-383 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000368981/1-401 ESIECSKI-T MDLKFNNSRK YISITVPSKT QTMSPHIKSV DDVVVLGMNL ENSBTAP00000012065/1-430 GSTECGKTRT MDLKFNSSRK YISITVPSKT QAMSPHIKSI DDIVVLGINL ENSTTRP00000012778/1-400 GSTECCKIRK MDLKFNSSRK YISITVPSKT QAMSPHIKSI DDIVVLGINL bmy_00854T0/1-455 GSTECSKIRT MDLKFNSSRK YISITVPSKT QAMSPHIKSI DDIVVLGINL BACU005136/1-383 ---------- MDLKFNSSRK YISITVPSKT QAMSPHIKSI DDIVVLGINL 201 250 ENSP00000368981/1-401 SKFNKLTQFF ICVAGVFVFY LIYGYLQELI FSVEGFKSCG WYLTLVQFAF ENSBTAP00000012065/1-430 SRFNKLTQFF ICVAGVFVFY LIYGYLQELI FSVEGFKPYG WYLTLVQFAF ENSTTRP00000012778/1-400 SRFNKLTQFF ICVAGVLVFY LIYGYIQELI FSVEGFKPYG WYLTLVQFAF bmy_00854T0/1-455 SRFNKLTQFF ICVAGVLVFY LIYGYLQELI FSVEGFKPYG WYLTLVQFAF BACU005136/1-383 SRFNKLTQFF ICVAGVLVFY LIYGYLQELI FSVEGFKPYG WYLTLVQFAF 251 300 ENSP00000368981/1-401 YSIFGLIELQ LIQDKRRRIP GKTYMIIAFL TVGTMGLSNT SLGYLNYPTQ ENSBTAP00000012065/1-430 YSIFGLIELQ LIQDKRRRIP GKTYMIIAFL TVGTMGLSNT SLGYLNYPTQ ENSTTRP00000012778/1-400 YSIFGLIELQ LIQDKRRRIP GKTYMIIAFL TVGTMGLSNT SLGYLNYPTQ bmy_00854T0/1-455 YSIFGLIELQ LIQDKRRRIP GKTYMIIAFL TVGTMGLSNT SLGYLNYPTQ BACU005136/1-383 YSIFGLIELQ LIQDKRRRIP GKTYIIIAFL TVGTMGLSNT SLGYLNYPTQ 301 350 ENSP00000368981/1-401 VIFKCCKLIP VMLGGVFIQG KRYNVADVSA AICMSLGLIW FTLADSTTAP ENSBTAP00000012065/1-430 VIFKCCKLIP VMLGGVFIQG KRYNVADVSA ALCMSLGLIW FTLADSTVAP ENSTTRP00000012778/1-400 VIFKCCKLIP VMLGG-LIQG KHYNVADVSA ALCMSLGLIW FTLADSTVAP bmy_00854T0/1-455 VIFKCCKLIP VMLGGVFIQG KRYNVADVSA ALCMSLGLIW FTLADSTVAP BACU005136/1-383 VIFKCCKLIP VMLGGVFIQG KRYNVADVSA ALCMSLGLIW FTLADSTVAP 351 400 ENSP00000368981/1-401 NFNLT----- ---------G VVLISLALCA DAVIGNVQEK AMKLHNASNS ENSBTAP00000012065/1-430 NFNLT----- ---------G VVLISLALCA DAVIGNVQEK AMKLHNASNS ENSTTRP00000012778/1-400 NFNLT----- ---------G VILISLALCA DAVIGNVQEK AMKLHNASNS bmy_00854T0/1-455 NFNLT----- ---------G VILISLALCA DAVIGNVQEK AMKLHNASNS BACU005136/1-383 NFNLTVKHHD WWPASYILAG VILISLALCA DAVIGNVQEK AMKLHNASNS 401 450 ENSP00000368981/1-401 EMVLYSYSIG FVYILLGLTC TSGLGPAVTF CAKNPVRTYG YAFLFSLTGY ENSBTAP00000012065/1-430 EMVLYSYSIG FVYILLGLTC TSGLGPAVTF CSKDPIRTYG YAFLFSLTGY ENSTTRP00000012778/1-400 EMVLYSYSIG FVYILLGLTC TSGLGPAVTF CSKDPVRTYG YAFLFSLTGY bmy_00854T0/1-455 EMVLYSYSIG FVYILLGLTC TSGLGPAVTF CSKDPVRTYG YAFLFSLTGY BACU005136/1-383 EMVLYSYSIG FVYILLGLTC TSGLGPAVTF CSKDPVRTYG YAFLFSLTGY 451 500 ENSP00000368981/1-401 FGISFVLALI KIFGALIAVT VTTGRKAMTI VLSFIFFAKP FTFQYVWSGL ENSBTAP00000012065/1-430 FGISFVLALI KIFGALLAVT VTTGRKAMTI VLSFIFFAKP FTFQYVWSGF ENSTTRP00000012778/1-400 FGISFVLALI KIFGALFAVT VTTGRKGMTI VLSFIFFAKP FTFQYVWSGL bmy_00854T0/1-455 FGISFVLALI KIFGALFAVT ---------- ---------- ---------- BACU005136/1-383 FGISFVLALI KIFGALFAVT VTTGRKGMTI VLSFIFFAKP FTFQYVWSGL 501 550 ENSP00000368981/1-401 LVVLGIFLNV YSKNMDKIRL PSLYDLINKS VEARKSRTLA QTV ENSBTAP00000012065/1-430 LVVLGIFLNV YSKNMDKMRL PSAYDLINRV MDLRKSRTLA QTV ENSTTRP00000012778/1-400 LVVLGIFLNV YSKNMDKIRL PSLYDVINKT VEVRRSGTLA QTV bmy_00854T0/1-455 ---------- ---------- ---------- ---------- --- BACU005136/1-383 LVILGIFLNV YSKNMDKIRL PSLYDVINKT AEVRRSGTLA QTV