KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:37 2014 Check: 00 .. Name: ENSP00000362354/1-851 Len: 942 Check: 7382 Weight: 1.00 Name: ENSBTAP00000012081/1-850 Len: 942 Check: 721 Weight: 1.00 Name: ENSTTRP00000002520/1-763 Len: 942 Check: 1367 Weight: 1.00 Name: bmy_07290T0/1-686 Len: 942 Check: 7962 Weight: 1.00 Name: BACU015491/1-843 Len: 942 Check: 3506 Weight: 1.00 // 1 50 ENSP00000362354/1-851 MNYVGQLAET VFGTVKELYR GLNPATLSGG IDVLVVKQVD GSFRCSPFHV ENSBTAP00000012081/1-850 MNYMGQLAET VFGTVKGLYR GLNPATLSGG IDVLVVRQVD GSFRCSPFHV ENSTTRP00000002520/1-763 ---------- ---------- ---------- ---------- ---------- bmy_07290T0/1-686 ---------- ---------- ---------- ---------- -----SPFHV BACU015491/1-843 MNYVGQLAET VFGTVKGLYQ GLNPATLTGG IDVLVVRQAD GSFRCSPFHV 51 100 ENSP00000362354/1-851 RFGKLGVLRS REKVVDIELN GEPVDLHMKL GDSGEAFFVQ ELESDDEHVP ENSBTAP00000012081/1-850 RFGKLGVLRS REKVVDIEIN GEPVDLHMKL GDSGEAFFVQ ELESDEEDVP ENSTTRP00000002520/1-763 -------LCS REKVVDIEIN GEPVDLHMKL GDSGEAFFIQ ELESDVEDMP bmy_07290T0/1-686 RFGKLGVLRS REKVVDIEIN GEPVDLHMKL GDSGEAFFIQ ELESDVEDMP BACU015491/1-843 RFGKLGVLRS REKVVDIEIN GEPVDLHMKL GDSGEAFFIQ ELESDVEDMP 101 150 ENSP00000362354/1-851 PGLCTSPIPW GGLSGFPSDS QLGTASEPEG LVMAGTASTG RRKRRRRRKP ENSBTAP00000012081/1-850 PRLCTSPIPW GGLAGFPSDS QLGTTSEPDA SI-AGMASSG RKKKRRRRKT ENSTTRP00000002520/1-763 PHLCTSPIPW GGLSGFPSDS HLGTAREPEA SI-AGTASTG WKKKRRRRKP bmy_07290T0/1-686 PHLCTSPIPW GGLSGFPSDS QLGTASEPEA SI-AGTASTG WKKKRRRRKP BACU015491/1-843 PHLCTSPIPW GGLSGFPSDS QLGTASEPEA SI-AGTTSTG WKKKRRRRKP 151 200 ENSP00000362354/1-851 KQKEDAVATD SSPEELEAGA ESELSLPEKL RPEPPG-VQL EEKSSLQPKD ENSBTAP00000012081/1-850 KRKEGTVAAD SSSEELEAGA ESEPSLLEKP RPEPPG-IQP EGESPPEPKD ENSTTRP00000002520/1-763 RRKEDAVAAD SSSEELEAGT GSELSLLEKP RPEPPG-VQP EGEASPQPKD bmy_07290T0/1-686 RRKEDTVAAD SSSEELEAGT GSELSLLEKP RPEPPGSVQP EGESSPQPKD BACU015491/1-843 RRKEDTVAAD SSSEELEAGT GSELSLLEKP RPEPPGSVQP EGESSPQPKD 201 250 ENSP00000362354/1-851 IYPYSDGEWP PQASLSAGEL TSPKSDSELE VRTPEPSPLR AESHMQWAWG ENSBTAP00000012081/1-850 IYPYSDGEWH PQASLSPGEL TSPKSDSELE LRTPEPSPLR AESHMQWAWG ENSTTRP00000002520/1-763 IYPYSDGERP PQASLSTGGL TSPKSDSELE LRTPEPIPLR AESHMQWAWG bmy_07290T0/1-686 TYPYSDGEWP PQASLSTGGL TSPKSDSELE LRTPEPIPLR AESHMQWAWG BACU015491/1-843 TYPYSDGEWP PQASLSTGGL TSPKSDSELE LRTPEPIPLR AESHMQWAWG 251 300 ENSP00000362354/1-851 RLPKVARAER PESSVVLEGR AGATSPPRGG PSTPSTSVAG GVDPLGLPIQ ENSBTAP00000012081/1-850 RLPKVGKAEW PESSVVADAS SRTASPPQGA PSTPSTSVI- GVDPPGLPTL ENSTTRP00000002520/1-763 RLPKVGNAEW PASSVVPDGS SKTASPPQGA PSTPSASVV- GVDPSGIPVL bmy_07290T0/1-686 RLPKVGKAEW PESSVVPDGS SKTASPPQGA PSTPSASVV- GVDPLGIPIL BACU015491/1-843 RLPKVGKAEW PESSVVPDGS SKTASPPQGV PSTPSASVV- GVNPSGIPIL 301 350 ENSP00000362354/1-851 QTEAGAD-LQ PDTEDPTLVG PPLHTPETEE SKTQSSGDMG LPPASKSWSW ENSBTAP00000012081/1-850 QRGAGTDLLQ PDTEAPALAG PPLSAPEREE TKTQSSGDAG PRPPSKSWSW ENSTTRP00000002520/1-763 QTGPGTHLLH PDTEVPALVG PPLQPPETEE TKTQSSGDVG LPPPSESWSW bmy_07290T0/1-686 QTGPGTDLLH PDTEVPALVG PPLQPPEREE TKTQSSGDAG LPPPSESWSW BACU015491/1-843 QTGPGTDLLH PDTEVPALVG PPLQPPEREE TKTQSSGDVG LPPPSESWSW 351 400 ENSP00000362354/1-851 ATLEVPVPTG QPERVSRGKG SPKRSQHLGP SDIYLDDLPS LDSENAALYF ENSBTAP00000012081/1-850 AALEDPAHTR KPEGVSQRKG SLKRSQHLGP SDIYLDDLPS LDSENAALYF ENSTTRP00000002520/1-763 AALEAPACTG QPEGISRRKG SLKRSQHLGP SEIYLDDLPS LDSENAALYF bmy_07290T0/1-686 AALEAPACTG QPEGISRRKG SLKRSQHLGP SEIYLDDLPS LDSENAALYF BACU015491/1-843 AALEAPACTG QPEGISRRKG SLKRSQHLGP SEIYLDDLPS LDSENAALYF 401 450 ENSP00000362354/1-851 PQSDSGLGAR RWSEPSSQKS LRDPNPEHEP EPTLDTVDTI ALSLCGGLAD ENSBTAP00000012081/1-850 PQSNSGLGAG KWSAPDSLKP LGDCNPEQEP EPIADTADAV ALSLCGGLAD ENSTTRP00000002520/1-763 PQSDCGLGAR KWSEAGSQKS LGDCN----P EPTRDTVDTV VLSLSGGLAD bmy_07290T0/1-686 PQSDCGRGAR KWSEAGSQKS LGGCXPEREP EPALGTADTV VLSLSGGLAD BACU015491/1-843 PQSDCGRGAR KWSEAGSQKS LGGCNPEREP EPAPDTADTV VLSLSGGLAD 451 500 ENSP00000362354/1-851 SRDISLEKFN QHSVSYQDLT KNPGLLDDPN LVVKINGKHY NWAVAAPMIL ENSBTAP00000012081/1-850 SRDVSVEKFS QHLVSYEDLA QNPGLLDDPN LVVKINKQHY NWAVAAPMIL ENSTTRP00000002520/1-763 SGDISVEKFN QHIVSYQDLA QNPGLLDDPN LVVKINEKHY NWAVAASMIL bmy_07290T0/1-686 SGDISVEKFN QHIVSYQDLA QNPXLLDDPN LVVKINEKHY NWAVAASMIL BACU015491/1-843 SGDISVEKFN QHIVSYQDLA QNPGLLDDPN LVVKINEKHY NWAVAASMIL 501 550 ENSP00000362354/1-851 SLQAFQKNLP KSTMDKLERE KMPRKGGRWW FSWRRRDFLA EERSAQKEKT ENSBTAP00000012081/1-850 SLQAFQKNLP KSTVDKLEKE KMPRKGGRWW FSWRRRDFPA KECSAQREKT ENSTTRP00000002520/1-763 SLQAFQKNLP KSTVDKLEKE KMPRKGGRWW FSWRCRDFPA KECRVRREKT bmy_07290T0/1-686 SLQAFQRNLP KSTVDKLEKE KMPRKGGRWW FSWRCRDFPA KECSAQREKT BACU015491/1-843 SLQAFQRNLP KSTVDKLEKE KMPRKGGRWW FSWRCRDFPA KECSARREKT 551 600 ENSP00000362354/1-851 AAKEQQ-GEK TEVLSSDDDA PDSPVILEIP SLPPSTPPST PTYKKSLRLS ENSBTAP00000012081/1-850 AVREQR-GEK TEALSSEDDT LDSPVILEAP SPPPSPPAHA RAYKKSLRLS ENSTTRP00000002520/1-763 AARQQQLGEK TEAPSSEDDA PDSPILLEAP SPPLSPPAHT PTYKKSLRLS bmy_07290T0/1-686 TAQQQQLGEK TEAPSSEDDA ---------P SPPLSPPAHT PAYKKSLRLS BACU015491/1-843 TVQQQQLGEK TEAPSSEDNA ---------P SPPLSPPAHA PAYKKSLRLS 601 650 ENSP00000362354/1-851 SDQI------ ---------- ---------- ---------- ---------- ENSBTAP00000012081/1-850 SSQI------ ---------- ---------- ---------- ---------- ENSTTRP00000002520/1-763 SNQI------ ---------- ---------- ---------- ---------- bmy_07290T0/1-686 SNQIMGQAWS VSPISKLLCL ELCRPHQHPS LPPCSHLLPT WLSLMNSGRF BACU015491/1-843 SNQI------ ---------- ---------- ---------- ---------- 651 700 ENSP00000362354/1-851 ---------- ---------- ---------- ---------- --RRLNLQEG ENSBTAP00000012081/1-850 ---------- ---------- ---------- ---------- --RRLNLQEG ENSTTRP00000002520/1-763 ---------- ---------- ---------- ---------- --RRLNLQEG bmy_07290T0/1-686 LSWEEQEKER PVEMEGHSSG GEAVGGQRPA AAAHSSPLAW PQRRLNLQEG BACU015491/1-843 ---------- ---------- ---------- ---------- --RRLNLQEG 701 750 ENSP00000362354/1-851 ANDVVFSVTT QYQGTCRCKA TIYLWKWDDK VVISDIDGTI TKSDALGHIL ENSBTAP00000012081/1-850 ANDVVFSVTT QYQGTCRCRA TIYLWKWDDK VVISDIDGTI TKSDALGHIL ENSTTRP00000002520/1-763 ANEVVFSVTT QYQGTCRCRA TIYLWKWDDR VIISDIDGTI TK-------- bmy_07290T0/1-686 ANDVVFSVTT QYQGTCRCRA TIYLWKWDDR VIISDIDGTI TK-------- BACU015491/1-843 ANSVVFSVTT QYQGTCRCRA TVYLWKWDDR VIISDIDGTI TKSDALGHIL 751 800 ENSP00000362354/1-851 PQLGKDWTHQ GITSLYHKIQ LNGYKFLYCS ARAIGMADLT KGYLQWVSEG ENSBTAP00000012081/1-850 PQLGKDWTHQ GITSLYHKIH LNGYKFLYCS ARAIGMANLT KGYLQWVSER ENSTTRP00000002520/1-763 ---------- ---------S YNGYKFLYCS ARAIGMADLT KGYLQWVSER bmy_07290T0/1-686 ---------- ---------- ---------- ---------- ---------- BACU015491/1-843 PQLGKDWTHQ GITRLYHKIH LNGYKFLYCS ARAIGMADLT KGYLQWVNER 801 850 ENSP00000362354/1-851 GCSLPKGPIL LSPSSLFSAL HREVIEKKPE VFKVACLSDI QQLFLPHGQP ENSBTAP00000012081/1-850 GCGLPKGPIL LSPSSLFSAL HREVIERKPE VFKIACLSDV QQLFLPQEQP ENSTTRP00000002520/1-763 GCGLPEGPIL LSPSSLFSAL HREVIEKKPE VFKIACLSDI QQLFLPQKQP bmy_07290T0/1-686 ---------- ---------- ---------- ---------- ---------- BACU015491/1-843 GCGLPEGPIL LSPSSLFSAL HREVIEKKPE VFKIACLSDI QQLFLPQEQP 851 900 ENSP00000362354/1-851 FYAAFGNRPN DVFAYRQVGL PESRIFTVNP RGELIQELIK NHKSTYERLG ENSBTAP00000012081/1-850 FYAAFGNRPN DVTAYRQVGL PACRIFTVNP RGELSQELIK NHKSTYERLS ENSTTRP00000002520/1-763 FYAAFGNRPN DVTAYRQVGL PTSRIFTVNP RGELSQEFMK NHKSTYERLG bmy_07290T0/1-686 ---------- ---------- ---------- ---------- ---------- BACU015491/1-843 FYAAFGNRPN DVTAYRQVGL PTSRIFTVNP RGELSQELMR NHKSTYERLG 901 950 ENSP00000362354/1-851 EVVELLFPPV ARGPSTDLAN PEYSNFCYWR EPLPAVDLDT LD ENSBTAP00000012081/1-850 EVVELLFPPV ARGPSTDLAH PEYSNFCYWR EPLAPVDLDA LA ENSTTRP00000002520/1-763 EVAELFFPPV ARGPSTDLAS PEYSNFCYWR EPLAPVDLDT LA bmy_07290T0/1-686 ---------- ---------- ---------- ---------- -- BACU015491/1-843 EVVELLFPPV ARGPSTDLAN PEYSNFCYWR EPLAPVDLDA LA