KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:39 2014 Check: 00 .. Name: bmy_11787T0/1-602 Len: 640 Check: 9703 Weight: 1.00 Name: ENSP00000221283/1-593 Len: 640 Check: 5525 Weight: 1.00 Name: ENSBTAP00000012094/1-593 Len: 640 Check: 4756 Weight: 1.00 Name: BACU002546/1-593 Len: 640 Check: 3788 Weight: 1.00 Name: ENSTTRP00000003680/1-593 Len: 640 Check: 2314 Weight: 1.00 // 1 50 bmy_11787T0/1-602 MAPSGLKAVV GEKILSGVIR SVKKDGEWKV LIMDHPSMRI LSSCCKMSDI ENSP00000221283/1-593 MAPSGLKAVV GEKILSGVIR SVKKDGEWKV LIMDHPSMRI LSSCCKMSDI ENSBTAP00000012094/1-593 MAPSGLKAVV GEKILSGVIR SVKKDGEWKV LIMDHPSMRI LSSCCKMSDI BACU002546/1-593 MAPSGLKAVV WEKILSGVIR SVKKDGEWKV LIMDHPSMRI LSSCCKMSDI ENSTTRP00000003680/1-593 MAPSGLKAVV GEKILSGVIR SVKKDGEWKV LIMDHPSMRI LSSCCKMSDI 51 100 bmy_11787T0/1-602 LAEGITIVED INKRREPIPS LEAIYLLSPT EKSVQALIAD FQGTPTFTYK ENSP00000221283/1-593 LAEGITIVED INKRREPIPS LEAIYLLSPT EKSVQALIKD FQGTPTFTYK ENSBTAP00000012094/1-593 LAEGITIVED INKRREPIPS LEAIYLLSPT EKSVQALIAD FRGTPTFTYK BACU002546/1-593 LAEGITIVED INKRREPIPS LEAIYLLSPT EKSVQALIAD FQGTPTFTYK ENSTTRP00000003680/1-593 LAEGITIVED INKRREPIPS LEAIYLLSPT EKSVQALIAD FQGTPTFTYK 101 150 bmy_11787T0/1-602 AAHVFFTDTC PEPLFCELGR SRLAKVVKTL KEIHLAFLPY EAQ------- ENSP00000221283/1-593 AAHIFFTDTC PEPLFSELGR SRLAKVVKTL KEIHLAFLPY EAQVFSLDAP ENSBTAP00000012094/1-593 AAHVFFTDTC PEPLFSELGR SRLAKVVKTL KEIHLAFLPY EAQVFSLDAP BACU002546/1-593 AAHVFFTDTC PEPLFCELSR SRLAKVVKTL KEIHLAFLPY EAQVFSLDAP ENSTTRP00000003680/1-593 AAHIFFTDTC PEPLFCELGR SRLAKVVKTL KEIHLAFLPY EAQVFSLDAP 151 200 bmy_11787T0/1-602 ---------- ----RARQLE TLAQQIATLC ATLQEYPAIR YHKGPEDTAQ ENSP00000221283/1-593 HSTYNLYCPF RAEERTRQLE VLAQQIATLC ATLQEYPAIR YRKGPEDTAQ ENSBTAP00000012094/1-593 HSTYNLYCPF RAGERARQLE ALAQQIATLC ATLQEYPAIR YRKGPEDTAQ BACU002546/1-593 HSTYNLYCPF RAGERARQLE ALAQQIATLC ATLQEYPAIR YHKGPEDTAQ ENSTTRP00000003680/1-593 HSTYNLYCPF RASERARQLE ALAQQIATLC ATLQEYPAIR YHKGPEDTAQ 201 250 bmy_11787T0/1-602 LAHAVLAKLN AFKADTPSLG EGPEKSRSQL LIMDRAADPV SPLLHELTFQ ENSP00000221283/1-593 LAHAVLAKLN AFKADTPSLG EGPEKTRSQL LIMDRAADPV SPLLHELTFQ ENSBTAP00000012094/1-593 LAHAVLAKLN AFKADTPNLG EGPEKTRSQL LIMDRAADPV SPLLHELTFQ BACU002546/1-593 LAHAVLAKLN AFKADTPSLG EGPEKSRSQL LIMDRAADPV SPLLHELTFQ ENSTTRP00000003680/1-593 LAHAVLAKLN AFKADTPSLG EGPEKSRSQL LIMDRAADPV SPLLHELTFQ 251 300 bmy_11787T0/1-602 AMAYDLLDIE QDTYRYETTG LSEAREKAVL LDEDDDLWVD LRHMHIADVS ENSP00000221283/1-593 AMAYDLLDIE QDTYRYETTG LSEAREKAVL LDEDDDLWVE LRHMHIADVS ENSBTAP00000012094/1-593 AMAYDLLDID QDTYRYETTG LSEAREKAVL LDEDDDLWVE LRHMHIADVS BACU002546/1-593 AMAYDLLDIE QDTYRYETTG LSEAREKAVL LDEDDDLWVD LRHMHIADVS ENSTTRP00000003680/1-593 AMAYDLLDIE QDTYRYETTG LSEAREKAVL LDEDDDLWVD LRHMHIADVS 301 350 bmy_11787T0/1-602 KKVTELLKTF CESKRLTTDK ANIKDLSHIL KKMPQYQKEL NKYSTHLHLA ENSP00000221283/1-593 KKVTELLRTF CESKRLTTDK ANIKDLSQIL KKMPQYQKEL NKYSTHLHLA ENSBTAP00000012094/1-593 KKVTELLKNF CESKRLTTDK ANIKDLSHIL KKMPQYQKEL NKYSTHLHLA BACU002546/1-593 KKVTELLKTF CESKRLTTDK ANIKDLSHIL KKMPQYQKEL NKYSTHLHLA ENSTTRP00000003680/1-593 KKVTELLKTF CESKRLTTDK ANIKDLSHIL KKMPQYQKEL NKYSTHLHLA 351 400 bmy_11787T0/1-602 DDCMKHFKGC VEKLCSVEQG SGTASRLERR ERSEPTYQLS RWTPIIKDVM ENSP00000221283/1-593 DDCMKHFKGS VEKLCSVEQD LAMGSDAEGE KIKDS---MK LIVPVLLDAA ENSBTAP00000012094/1-593 DDCMKHFKGC VEKLCSVEQD LAMGSDAEGE KIKDP---MK LIVPVLLDAA BACU002546/1-593 DDCMKHFKGS VEKLCSVEQD LAMGSDAEGE KIKDA---MK LIVPVLLDAA ENSTTRP00000003680/1-593 DDCMKHFKGS VEKLCSVEQD LAMGSDAEGE KIKDA---MK LIVPVLLDAA 401 450 bmy_11787T0/1-602 ETPGY--LRG RELRILGSHG -------SVG PHSWVPEELS GSRVLKKLG- ENSP00000221283/1-593 V-PAYDKIRV LLLYILLRNG VSEENLAKLI QHANVQAHSS LIRNLEQLGG ENSBTAP00000012094/1-593 V-PAYDKIRV LLLYILLRNG VSEENLAKLI QHANVQAHSN LIRNLEQLGG BACU002546/1-593 V-PAYDKIRV LLLYILLRNG VSEENLAKLI QHANVQAHSS LIRNLEQLGG ENSTTRP00000003680/1-593 V-PAYDKIRV LLLYILLRNG VSEENLAKLI QHANVQAHSS LIQNLEQLGG 451 500 bmy_11787T0/1-602 ----PQGPGS PRGWRYRWWL LSARTLAHEH TLWRGLQTLS PVARAPLFTL ENSP00000221283/1-593 TVTNPGGSGT SSRLEPR--- -ERMEPTYQL SRW------T PVIKDVM--- ENSBTAP00000012094/1-593 TVTNPGSSGT TSRLERR--- -ERSEPTYQL SRW------T PVIKDVM--- BACU002546/1-593 TVTNPGGSGT TSRLERR--- -ERLEPTYQL SRW------T PIIKDVM--- ENSTTRP00000003680/1-593 TVTNPGGCGT TSRLERR--- -ERSEPTYQL SRW------T PIIKDVM--- 501 550 bmy_11787T0/1-602 LLWPQDAVED RLDRKVWPFV SDPAPMPSSQ AAVSARFGHW HKNKTGVEAR ENSP00000221283/1-593 ----EDAVED RLDRNLWPFV SDPAPTASSQ AAVSARFGHW HKNKAGIEAR ENSBTAP00000012094/1-593 ----EDAVED RLDRKLWPFV SDPAPTSSSQ AAVSARFGHW HKNKAGVEAR BACU002546/1-593 ----EDAVED RLDRKVWPFV SDPAPTPSSQ AAVSARFGHW HKNKTGVEAR ENSTTRP00000003680/1-593 ----EDAVED RLDRKLWPFV SDPAPTPSSQ AAVSARFGHW HKNKAGVEAR 551 600 bmy_11787T0/1-602 AGPRLIVYIM GGVAMSEMRA AYEVTRATDG KWEVLIGEWP GLGPLGWGGA ENSP00000221283/1-593 AGPRLIVYVM GGVAMSEMRA AYEVTRATEG KWEVLIG--- ---------- ENSBTAP00000012094/1-593 AGPRLIVYIV GGVAMSEMRA AYEVTRATDG KWEVLIG--- ---------- BACU002546/1-593 AGPRLIVYIM GGVAMSEMRA AYEVTRATDG KWEVLIG--- ---------- ENSTTRP00000003680/1-593 AGPRLIVYIV GGVAMSEMRA AYEVTRATDG KWEVLIG--- ---------- 601 650 bmy_11787T0/1-602 GNVPLCVWVP GGLTAACLLG PQSLEPPQGL GERIPDT--- ENSP00000221283/1-593 ---------- ---SSHILTP TRFLDDLKAL DKKLEDIALP ENSBTAP00000012094/1-593 ---------- ---SSHILTP TRFLDDLKTL DQKLEGVSLP BACU002546/1-593 ---------- ---SSHILTP TRFLDDLKTL DQKLEDISLP ENSTTRP00000003680/1-593 ---------- ---SSHILTP TRFLDDLKTL DQKLEDISLP