KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 16:45:43 2014  Check: 00 ..

 Name: ENSTTRP00000002543/1-124  Len:    125  Check:  7785  Weight:  1.00
 Name: ENSP00000315693/1-125     Len:    125  Check:  4242  Weight:  1.00
 Name: bmy_02785T0/1-115         Len:    125  Check:  9430  Weight:  1.00
 Name: ENSBTAP00000012120/1-125  Len:    125  Check:  5198  Weight:  1.00

//


                          1                                                   50
ENSTTRP00000002543/1-124  -AKYLAQIIV MGVQVVGRAF ARALQQEFAX XXXXXXXXXX XXXXXXXXXX 
ENSP00000315693/1-125     MAKYLAQIIV MGVQVVGRAF ARALRQEFAA SRAAADARGR AGHRSAAASN 
bmy_02785T0/1-115         ---------- MGVQVVGRAF ARALQQEFAA SRAAADARGR AGHQSAAASN 
ENSBTAP00000012120/1-125  MAKYLAQIIV MGAQVVGRAF ARALRQEFAA SRAAADARGR AGHQSAATSN 


                          51                                                 100
ENSTTRP00000002543/1-124  XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XFYLQSKVVR 
ENSP00000315693/1-125     LSGLSLQEAQ QILNVSKLSP EEVQKNYEHL FKVNDKSVGG SFYLQSKVVR 
bmy_02785T0/1-115         LSGLSLQEAQ QILNISKLSP EEIQKNYEHL FKVNDKSVGG SFYLQSKVVR 
ENSBTAP00000012120/1-125  LSGLSLQEAQ QILNVSKLSP EEIQKNYEHL FKVNDKSVGG SFYLQSKVVR 


                          101                                                150
ENSTTRP00000002543/1-124  AKERLEEELR IQAQENRERE QPPKT 
ENSP00000315693/1-125     AKERLDEELK IQAQEDREKG QMPHT 
bmy_02785T0/1-115         AKERLEEELR IQAQEDRERE QPPKT 
ENSBTAP00000012120/1-125  AKERLEEELR IQAQEDRERQ QPPKT