KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:45 2014 Check: 00 .. Name: ENSP00000401470/1-587 Len: 1379 Check: 3497 Weight: 1.00 Name: ENSBTAP00000012125/1-585 Len: 1379 Check: 8521 Weight: 1.00 Name: BACU013405/1-1377 Len: 1379 Check: 1362 Weight: 1.00 Name: bmy_00998T0/1-540 Len: 1379 Check: 9961 Weight: 1.00 Name: ENSTTRP00000003150/1-571 Len: 1379 Check: 7271 Weight: 1.00 // 1 50 ENSP00000401470/1-587 ---------- ---------- -------MAS EDIAKLAETL AKTQVAGGQL ENSBTAP00000012125/1-585 ---------- ---------- -------MAS EDIAKLAETL AKTQVAGGQL BACU013405/1-1377 MGAGGGAALE LDEEGCRFPG EPTSVSSMAS EDIAKLAETL AKTQVAGGLL bmy_00998T0/1-540 ---------- ---------- -------MAS EDIAKLAETL AKTQVAGGQL ENSTTRP00000003150/1-571 ---------- ---------- -------MAS EDIAKLAETL AKTQVAGGQL 51 100 ENSP00000401470/1-587 SFKGKSLKLN TAEDAKDVIK EIEDFDSLEA LRLEGNTVGV EAARVIAKAL ENSBTAP00000012125/1-585 SFKGKSLKLN TADDAKDVIK EIEDFDGLEA LRLEGNTVGV EAARVIAKAL BACU013405/1-1377 SFKGKSLKLN TAEDAKDVIK EIEDFDGLEA LRLEGNTVGV EAARVIAKAL bmy_00998T0/1-540 SFKGKSLKLN TAEDAKDVIK EIEDFDGLEA LRLEGNTVGV EAARVIAKAL ENSTTRP00000003150/1-571 SFKGKSLKLN TAEDAKDVIK EIEDFDGLEA LRLEGNTVGV EAARVIAKAL 101 150 ENSP00000401470/1-587 EKKSELKRCH WSDMFTGRLR TEIPPALISL GEGLITAGAQ LVELDLSDNA ENSBTAP00000012125/1-585 EKKPELKRCH WSDMFTGRLR SEIPPALISL GEGLITAGAQ LVELDLSDNA BACU013405/1-1377 EKKSELKRCH WSDMFTGRLR CEIPPALISL GEGLITAGAQ LVELDLSDNA bmy_00998T0/1-540 EKKSELK--- ---------- -------ISL GEGLITAGAQ LVELDLSDNA ENSTTRP00000003150/1-571 EKKSELKRCH WSDMFTGRLR SEIPPALISL GEGLITAGAQ LVELDLSDNA 151 200 ENSP00000401470/1-587 FGPDGVQGFE ALLKSSACFT LQELKLNNCG MGIGGGKILA AALTECHRKS ENSBTAP00000012125/1-585 FGPDGVRGFE ALLKSSACFT LHELKLNNCG MGIGGGKILA AALTECHRKS BACU013405/1-1377 FGPDGVRGFE ALLKSSTCFT LHELKLNNCG MGIGGGKILA AALTECHRKS bmy_00998T0/1-540 FGPDGVRGFE ALLKSSTCFT LHELKLNNCG MGIGGGKILA AALTECHRKS ENSTTRP00000003150/1-571 FGPDGVRGFE ALLKSSTCFT LHELKLNNCG MGVGGGKILA AALTECHRKS 201 250 ENSP00000401470/1-587 SAQGKPLALK VFVAGRNRLE NDGATALAEA FRVIGTLEEV HMPQNGINHP ENSBTAP00000012125/1-585 SAQGKPLALK VFVAGRNRLE NDGATALAEA FGIIGTLEEV HMPQNGINHP BACU013405/1-1377 SAQGKPLALK VFVAGRNRLE NDGATALAEA FGIIGTLEEV HMPQNGINHP bmy_00998T0/1-540 SAQGKPLALK VFVAGRNRLE NDGATALAEA FGIIGTLEEV HMPQNGINHP ENSTTRP00000003150/1-571 SAQGKPLALK VFMAGRNRLE NDGATALAEA FGIIGTLEEV HMPQNGINHP 251 300 ENSP00000401470/1-587 GITALAQAFA VNPLLRVINL NDNTFTEKGA VAMAETLKTL RQVEVINFGD ENSBTAP00000012125/1-585 GVTALAQAFA INPLLRVINL NDNTFTEKGA VAMAKTLKTL RQVEVINFGD BACU013405/1-1377 GVTALAQAFA INPLLRVINL NDNTFTEKGA VAMAKTLKTL RQVEVINFGD bmy_00998T0/1-540 GVTALAQAFA INPLLRVINL NDNTFTEKGA VAMAKTLKTL RQVEVINFGD ENSTTRP00000003150/1-571 GVTALAQAFA INPLLRVINL NDNTFTEKGA VAMAKTLNAL RQVEVINFGD 301 350 ENSP00000401470/1-587 CLVRSKGAVA IADAIRGGLP KLKELNLSFC EIKRDAALAV AEAMADKAEL ENSBTAP00000012125/1-585 CLVRSKGAIA IADAIHGGLP KLKELNLSFG EIKREAALSV AEAVADKTEL BACU013405/1-1377 CLVRSKGAVA IADAVHGGLP KLKELNLSFC EIRRDAALSV AEAVADKVEL bmy_00998T0/1-540 CLVRSKGAVA IADA------ ---ELNLSFC EIKRDAALSV AEAVADKVEL ENSTTRP00000003150/1-571 CLVRSKGAVA IADAVHGGLP KLKELNLSFG EIKRDAALSV AEAVADKVEL 351 400 ENSP00000401470/1-587 EKLDLNGNTL GEEGCEQLQE VLEGFNMAKV LASLSDDEDE EEEEEGEEEE ENSBTAP00000012125/1-585 EKLDLNGNML GEEGCEQLQE VLEGFNMAAV LASLSDDEGE DDED--EDEE BACU013405/1-1377 EKLDLNGNTL GEEGCEQLQE VLDGFNMARV LASLSDDEGE DDED--EDEE bmy_00998T0/1-540 EKLDLNGPG- ---------- -----PVPLL GASPSDDEGE DDED--EDEE ENSTTRP00000003150/1-571 EKLDLNGNNL GEEGCEQLQE VLDGFNMAKV LASLSDDEGE DDED--ED-- 401 450 ENSP00000401470/1-587 EEAEEEEEED EEEEEEEEEE EEEEPQQRGQ GEKSATPSRK ILDPNTGEPA ENSBTAP00000012125/1-585 EEEEEEEEEG EEEEEDEEEE EEEEPQQEEQ GEESSTPSRK GQGPNSGEPA BACU013405/1-1377 EEGEEEEEEG EEEEEEEEEE EEEEPQQGEQ REESTTPPRK ILDPNSGEPA bmy_00998T0/1-540 EEGEEEEEEG EEEEEEEEEE EEEEPQQGEQ REESTTPPRK ILDPNSGEPA ENSTTRP00000003150/1-571 ---------- --EDEDEEEE EEEEPQLGER RERPTAPPRK MLDPDGGEPA 451 500 ENSP00000401470/1-587 PVLSSPPPAD VSTFLAFPSP EKLLRLGPKS SVLIAQQTDT SDPEKVVSAF ENSBTAP00000012125/1-585 PVLSSPPPAD VSTFLAFPSP EKLLRLGPKS SMLIAQQTDT SDPEKVVSAF BACU013405/1-1377 PVLSSPPPAD VSTFLAFPSP EKLLRLGPKS SVLIAQQTDT SDPEKVVSAF bmy_00998T0/1-540 PVLSSPPPAD VSTFLAFPSP EKLLRLGPKS SVLIAQQTDT SDPEKVVSAF ENSTTRP00000003150/1-571 PVLSSPPPAD VSTFLAFPSP EKLLRLGPKS SVLIAQQTDT SDPEKVVSAF 501 550 ENSP00000401470/1-587 LKVSSVFKDE ATVRMAVQDA VDALMQKAFN SSSFNSNTFL TRLLVHMGLL ENSBTAP00000012125/1-585 LKVSSVFKDE ASVRTAVQDA VDALMKKAFS SSAFNSNAFL TRLLIHMGLL BACU013405/1-1377 LKVSSVFKDE ATVRSAVQDA VDTLMKKAFS STSFNSNAFL TRLLIHMGLL bmy_00998T0/1-540 LKVSSVFKDE ATVRSAVQDA VDTLMKKAFS SSSFNSNAFL TRLLIHMGLL ENSTTRP00000003150/1-571 LKVSSVFKDE ATVRSAVQDA VDTLMKKAFS SSSFNSNAFL TRLLIHMGLL 551 600 ENSP00000401470/1-587 KSEDKVKAIA NLYGPLMALN HMVQQDYFPK ALAPLLLAFV TKPN------ ENSBTAP00000012125/1-585 KSEDKIKAVA NLYGPLMALT HVVQQDYFPK ALAPLLLAFM TKPN------ BACU013405/1-1377 KSEDKIKAIA NLYGPLMALN HMVQQEYFPK ALAPLLLAFV TKPQSVSVVL bmy_00998T0/1-540 KSEDKIKAIA NLYGPLMALN HMVQQEYFPK ALAPLLLAFV TKPN------ ENSTTRP00000003150/1-571 KSEDKIKAIA NLYGPLMALN HMVQQEYFPK ALAPLLLAFV TKPN------ 601 650 ENSP00000401470/1-587 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012125/1-585 ---------- ---------- ---------- ---------- ---------- BACU013405/1-1377 LLPLLLPLGP TWHAAAQRCP QTCICDNSRR HVACRHQNLT EVPNAIPELT bmy_00998T0/1-540 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003150/1-571 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000401470/1-587 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012125/1-585 ---------- ---------- ---------- ---------- ---------- BACU013405/1-1377 QRLDLQGNML KLIPPAAFRD LPYLTHLDLR HCQVELVAEG AFRGLGRLLL bmy_00998T0/1-540 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003150/1-571 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000401470/1-587 ---------- ---------- ---------- ---------- ---SALESCS ENSBTAP00000012125/1-585 ---------- ---------- ---------- ---------- ---GALESCS BACU013405/1-1377 LNLASNRLNA LPQEALDGLG SLRRLELEGN LLEELRPGTF GALGALATLN bmy_00998T0/1-540 ---------- ---------- ---------- ---------- ---GALESCS ENSTTRP00000003150/1-571 ---------- ---------- ---------- ---------- ---GALESCS 751 800 ENSP00000401470/1-587 FARHSL---- ---------- ---------- ---------- ---------- ENSBTAP00000012125/1-585 FARHNL---- ---------- ---------- ---------- ---------- BACU013405/1-1377 LAHNALVYLP AMAFQGLVRA RWLQLSYNAL SVLAPDALAG LPALRRLSLH bmy_00998T0/1-540 FARHNL---- ---------- ---------- ---------- ---------- ENSTTRP00000003150/1-571 FARHNL---- ---------- ---------- ---------- ---------- 801 850 ENSP00000401470/1-587 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012125/1-585 ---------- ---------- ---------- ---------- ---------- BACU013405/1-1377 HNELQSLPGA TLSQARGLAR LELGHNPFTY TSEEDGLVLP GLRELRLDHG bmy_00998T0/1-540 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003150/1-571 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000401470/1-587 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012125/1-585 ---------- ---------- ---------- ---------- ---------- BACU013405/1-1377 ALQALDPRAF AHCPRLHTLD LRGNQLDALQ PLQGPGQLRR LRLQGNPLRC bmy_00998T0/1-540 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003150/1-571 ---------- ---------- ---------- ---------- ---------- 901 950 ENSP00000401470/1-587 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012125/1-585 ---------- ---------- ---------- ---------- ---------- BACU013405/1-1377 DCRARPLLQW LARAXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_00998T0/1-540 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003150/1-571 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSP00000401470/1-587 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012125/1-585 ---------- ---------- ---------- ---------- ---------- BACU013405/1-1377 XXXXXXXXXX XXXXXXXXXX XXXXXXXXLR CPRAGAEEEE EEVAAARPRV bmy_00998T0/1-540 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003150/1-571 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000401470/1-587 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012125/1-585 ---------- ---------- ---------- ---------- ---------- BACU013405/1-1377 PAGTSKEKAG EAGPCPRACV CAPESRHSSC EGRGLQVVPR GFPNDTQLLD bmy_00998T0/1-540 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003150/1-571 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000401470/1-587 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012125/1-585 ---------- ---------- ---------- ---------- ---------- BACU013405/1-1377 LRQNHFPLVP REAFPGLGQL VSLHLQHCGI TELEAGALAG LGSLLYLYLS bmy_00998T0/1-540 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003150/1-571 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000401470/1-587 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012125/1-585 ---------- ---------- ---------- ---------- ---------- BACU013405/1-1377 DNMLSSLSAA SLEGAPCLGY LYLERNRFLQ VPGAALRALP SLFSLHLQDN bmy_00998T0/1-540 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003150/1-571 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSP00000401470/1-587 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012125/1-585 ---------- ---------- ---------- ---------- ---------- BACU013405/1-1377 ALDRLALGDL AGVRALRWLY LSGNRITEVS LGALGPAQEL EKLHLDRNEL bmy_00998T0/1-540 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003150/1-571 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000401470/1-587 ---------- ---------- ---------- --------LQ TLY------- ENSBTAP00000012125/1-585 ---------- ---------- ---------- --------LQ TLY------- BACU013405/1-1377 REVPTAALEG LPALLELQLS GNPLRALRDG AFWPVGRSLQ HLFLNSSGLE bmy_00998T0/1-540 ---------- ---------- ---------- --------LQ TLY------- ENSTTRP00000003150/1-571 ---------- ---------- ---------- --------LQ TLY------- 1251 1300 ENSP00000401470/1-587 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012125/1-585 ---------- ---------- ---------- ---------- ---------- BACU013405/1-1377 QISPGAFSGL GPRLQSLHLQ KNQLQALPVL PGLSQLELID LSGNPFHCDC bmy_00998T0/1-540 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003150/1-571 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSP00000401470/1-587 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012125/1-585 ---------- ---------- ---------- ---------- ---------- BACU013405/1-1377 QLLPLHRWLT GLNLRVGATC AAPPSARGQR VKAAAAVFEA CPGWAARKAK bmy_00998T0/1-540 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003150/1-571 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSP00000401470/1-587 ---------- ---------- -------KV ENSBTAP00000012125/1-585 ---------- ---------- -------KV BACU013405/1-1377 RTPAPRPSAR RTPMRGRRQG ANKVGRGQV bmy_00998T0/1-540 ---------- ---------- -------KV ENSTTRP00000003150/1-571 ---------- ---------- -------KV