KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:49 2014 Check: 00 .. Name: ENSP00000349181/1-273 Len: 275 Check: 7116 Weight: 1.00 Name: ENSBTAP00000012146/1-266 Len: 275 Check: 9432 Weight: 1.00 Name: ENSTTRP00000014317/1-257 Len: 275 Check: 282 Weight: 1.00 Name: bmy_07015T0/1-250 Len: 275 Check: 9324 Weight: 1.00 Name: BACU020287/1-245 Len: 275 Check: 2554 Weight: 1.00 // 1 50 ENSP00000349181/1-273 MATWDEKAVT RRAKVAPAER MSKFLRHFTV VGDDYHAWNI NYKKWENEEE ENSBTAP00000012146/1-266 ------QAVT RRARVAPAER MSKFLKHFTV VGDDYHAWNI NYKKWEN-EE ENSTTRP00000014317/1-257 MATWDEKAVT RRAKVAPADR MSKFLKHFTV VGDDCHAWNI NYKKWEN-EE bmy_07015T0/1-250 ---------- ---------- MSKFLKHFTV VGDDYHAWNI NYKKWEN-EE BACU020287/1-245 ------QAVT RRAKVAPAER MSKFLKHFTV VGDDYHAWNI NYKKWEN-EE 51 100 ENSP00000349181/1-273 EEEEEQPPPT --PVSGEEGR AAAPDVAPAP GPAPRAPLDF RGMLRKLFSS ENSBTAP00000012146/1-266 EEEEEQPPPT EASASAEEGR ATDPTP--AP APVPRPRLDF RTTLRKLFSA ENSTTRP00000014317/1-257 EEEEE-PPPT --PASGAEGR DADPTA--AP APVPRPRLDF RTTLRKLFSA bmy_07015T0/1-250 EEEEEQPPPT --PASGEEGR AADPTT--AP APVPRPRLDF RTTLRKLFSA BACU020287/1-245 EDEEEQPPPT --PASGEEGR AADPTTAPAP APVPRPRLDF RTTLRKLFSA 101 150 ENSP00000349181/1-273 HRFQVIIICL VVLDALLVLA ELILDLKIIQ PDKNNYAAMV FHYMSITILV ENSBTAP00000012146/1-266 HRFQVIIICL VVLDALLVLA ELVLDLKIIE PDKNNYAPKV FHYMSLAILT ENSTTRP00000014317/1-257 HRFQVIIICL VVLDALLVLA ELVLDLKIIQ PDKNNYAARV FHYMSIAILT bmy_07015T0/1-250 HRFQVIIICL VVLDALLVLA ELVLDLKIIQ PDKNNYAARV FHYMSIAILT BACU020287/1-245 HRFQVIIICL VVLDALLVLA ELVLDLKIIQ PDKNNYAARV FHYMSIAILT 151 200 ENSP00000349181/1-273 FFMMEIIFKL FVFRLEFFHH KFEILDAVVV VVSFILDIVL LFQEHQFEAL ENSBTAP00000012146/1-266 FFMMEIFFKI FVFRLEFFHH KFEILDTIVV VISFILDLVL LFREHQFEAL ENSTTRP00000014317/1-257 FFMMEIFFKI FVFRLEFFHH KFEILDAIVV VVSFILDVVL LFREHEFEAL bmy_07015T0/1-250 FFMMEIFFKI FVFRLEFFHH KFEILDAIVV VVSFILDVVL LFREHEFEAL BACU020287/1-245 FFMMEIFFKI FVFRLEFFHH KFEILDAIVV VVSFVLDVVL LFREHEFEAL 201 250 ENSP00000349181/1-273 GLLILLRLWR VARIINGIII SVKTRSERQL LRLKQMNVQL AAKIQHLEFS ENSBTAP00000012146/1-266 GLLILLRLWR VARIINGIII SVKTRSERQL LRLKQINIQL ATKIQHLEFS ENSTTRP00000014317/1-257 GLLILLRLWR VARIINGIII SVKTRSERQL LRLKQINIQL ATKIQHLEFS bmy_07015T0/1-250 GLLILLRLWR VARIINGIII SVKTRSERQL LRLKQINIQL ATKIQHLEFS BACU020287/1-245 GLLILLRLWR VARIINGIII SVKTRSERQL LRLKQINIQL ATKIQHLEFS 251 300 ENSP00000349181/1-273 CSEKEQEIER LNKLLRQHGL LGEVN ENSBTAP00000012146/1-266 CSEKEQEIER LNKLLRQHGL LGEVN ENSTTRP00000014317/1-257 CSEKEQEIER -NKL------ ----- bmy_07015T0/1-250 CSEKEQEIER LNKLLRQHGL LGEGN BACU020287/1-245 CSEK------ ---------- -----