KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:45:51 2014 Check: 00 ..
Name: ENSTTRP00000008887/1-1007 Len: 1106 Check: 2484 Weight: 1.00
Name: bmy_10967T0/1-1036 Len: 1106 Check: 505 Weight: 1.00
Name: ENSP00000274938/1-993 Len: 1106 Check: 7505 Weight: 1.00
Name: BACU018059/1-986 Len: 1106 Check: 8582 Weight: 1.00
Name: ENSBTAP00000012158/1-993 Len: 1106 Check: 1210 Weight: 1.00
//
1 50
ENSTTRP00000008887/1-1007 ------MGSG RVPGLCLLVL LVHARAAQHS KAVQ------ ----------
bmy_10967T0/1-1036 MELLSFKDSW RHGGQVEAGL V--SSGIEFR KILKSEGYGR PPASGGVAVY
ENSP00000274938/1-993 ------MGSG RVPGLCLLVL LVHARAAQYS KAAQ------ ----------
BACU018059/1-986 ------MGSG RVPGLCLLVL LVHARAAQHS KAVQGERLEE PGAVRVNEKF
ENSBTAP00000012158/1-993 ------MGSG RVPGLCLLVL LVHARAAQHS KAVQ------ ----------
51 100
ENSTTRP00000008887/1-1007 ---------- ---------- ---------- -DVDECVEGT DNCHIDAICQ
bmy_10967T0/1-1036 ---------- ---------- ---------- -YVDECVEGT DNCHIDAICQ
ENSP00000274938/1-993 ---------- ---------- ---------- -DVDECVEGT DNCHIDAICQ
BACU018059/1-986 GEPWAEVTTH LRILPDFIAT PASSKDFLSS KNVDECVEGT DNCHIDAICQ
ENSBTAP00000012158/1-993 ---------- ---------- ---------- -DVDECVEGT DNCHIDAICQ
101 150
ENSTTRP00000008887/1-1007 NTPRSYKCIC KSGYTGDGKH CKXXXXXXXX XXXXXXXXXX XXXXXXXXXX
bmy_10967T0/1-1036 NTPRSYKCIC KSGYTGDGKH CKDVDECERE DNAGCVHDCV NIPGNYRCTC
ENSP00000274938/1-993 NTPRSYKCIC KSGYTGDGKH CKDVDECERE DNAGCVHDCV NIPGNYRCTC
BACU018059/1-986 NTPRSYKCIC KSGYTGDGKH CKDVDECERE DNAGCVHDCV NIPGNYRCTC
ENSBTAP00000012158/1-993 NTPRSYKCIC KSGYTGDGKH CKDVDECERE DNAGCVHDCV NIPGNYRCTC
151 200
ENSTTRP00000008887/1-1007 XXXXXXXXXX XXXXXVDECA EGNGGCQQSC VNMMGSYECH CREGFFLSDN
bmy_10967T0/1-1036 YDGFHLAHDG HNCLDVDECA EGNGGCQQSC VNMMGSYECH CREGFFLSDN
ENSP00000274938/1-993 YDGFHLAHDG HNCLDVDECA EGNGGCQQSC VNMMGSYECH CREGFFLSDN
BACU018059/1-986 YDGFHLAHDG HNCLDVDECA EGNGGCQQSC VNMMGSYECH CREGFFLSDN
ENSBTAP00000012158/1-993 YDGFHLAHDG HNCLDVDECA EGNGGCQQSC VNMMGSYECH CREGFFLSDN
201 250
ENSTTRP00000008887/1-1007 QHTCIQRPEE GMNCMNKNHG CAHICRETPK GGIACECRPG FELTKNQRDC
bmy_10967T0/1-1036 QHTCIQRPEE GMNCMNKNHG CAHICRETPK GGIACECRPG FELTKNQRDC
ENSP00000274938/1-993 QHTCIQRPEE GMNCMNKNHG CAHICRETPK GGIACECRPG FELTKNQRDC
BACU018059/1-986 QHTCIQRPEE GMNCMNKNHG CAHICRETPK GGIACECRPG FELTKNQRDC
ENSBTAP00000012158/1-993 QHTCIQRPEE GMNCMNKNHG CAHICRETPK GGIACECRPG FELTKNQRDC
251 300
ENSTTRP00000008887/1-1007 KLTCNYGNGG CQHTCDDTEQ GPRCGCHVKF VLHTDGKTCI GERRLEQHIP
bmy_10967T0/1-1036 KLTCNYGNGG CQHTCDDTEQ GPRCGCHVKF VLHTDGKTCI ----------
ENSP00000274938/1-993 KLTCNYGNGG CQHTCDDTEQ GPRCGCHIKF VLHTDGKTCI ----------
BACU018059/1-986 KLTCNYGNGG CQHTCDDTEQ GPRCGCHVKF VLHTDGKTCI ----------
ENSBTAP00000012158/1-993 KLTCNYGNGG CQHTCDDTEQ GPRCGCHVKF VLHTDGKTCI ----------
301 350
ENSTTRP00000008887/1-1007 PQAVSNETCA VNNGGCDSKC HDAATGVHCS CPVGFMLQPD RKTCKDIDEC
bmy_10967T0/1-1036 ------ETCA VNNGGCDSKC HDAATGVHCS CPVGFMLQPD RKTCKDIDEC
ENSP00000274938/1-993 ------ETCA VNNGGCDSKC HDAATGVHCT CPVGFMLQPD RKTCKDIDEC
BACU018059/1-986 ------ETCA VNNGGCDSKC HDAATGVHCS CPVGFMLQPD RKTCKDIDEC
ENSBTAP00000012158/1-993 ------ETCA VNNGGCDSKC HDAATGVHCS CPVGFMLQPD RKTCKDIDEC
351 400
ENSTTRP00000008887/1-1007 RLNNGGCDHI CRNTVGSFEC SCKKGYKLLI NERNCQDIDE CSFDRTCDHI
bmy_10967T0/1-1036 RLNNGGCDHI CRNTVGSFEC SCKKGYKLLI NERNCQDIDE CSFDRTCDHI
ENSP00000274938/1-993 RLNNGGCDHI CRNTVGSFEC SCKKGYKLLI NERNCQDIDE CSFDRTCDHI
BACU018059/1-986 RLNNGGCDHI CRNTVGSFEC SCKKGYKLLI NERNCQDIDE CSFDRTCDHI
ENSBTAP00000012158/1-993 RLNNGGCDHI CRNTVGSFEC SCKKGYKLLI NERNCQDIDE CSFDRTCDHI
401 450
ENSTTRP00000008887/1-1007 CVNTPGSFQC LCHHGYLLYG VTHCGDVDEC SINRGGCRFG CINTPGSYQC
bmy_10967T0/1-1036 CVNTPGSFQC LCHHGYLLYG VTHCGDVDEC SINRGGCRSG CINTPGSYQC
ENSP00000274938/1-993 CVNTPGSFQC LCHRGYLLYG ITHCGDVDEC SINRGGCRFG CINTPGSYQC
BACU018059/1-986 CVNTPGSFQC LCHHGYLLYG VTHCGDVDEC SINRGGCRSG CINTPGSYQC
ENSBTAP00000012158/1-993 CVNTPGSFQC LCRHGYLLYG VTHCGDVDEC SINRGGCRFG CVNTPGSYQC
451 500
ENSTTRP00000008887/1-1007 TCPAGQGRLH WNGKDCT--- ---------- ---------- ---------E
bmy_10967T0/1-1036 TCPAGQGRLH WNGKDCTGGQ RPLLAEAGTA VSGLGVVGVL GNVEFHTEEE
ENSP00000274938/1-993 TCPAGQGRLH WNGKDCT--- ---------- ---------- ---------E
BACU018059/1-986 TCPAGQGRLH WNGKDCT--- ---------- ---------- ---------E
ENSBTAP00000012158/1-993 TCPAGQGRLH WNGKDCT--- ---------- ---------- ---------E
501 550
ENSTTRP00000008887/1-1007 PVKCHSSPGA SKAMISCSRS GKKDTCALSC PSRARFLPES ENGFTVSCGI
bmy_10967T0/1-1036 PVKCHSSPGA SKAMISCSRS GKKDTCALTC PSRARFLPES ENGFTVSCGI
ENSP00000274938/1-993 PLKCQGSPGA SKAMLSCNRS GKKDTCALTC PSRARFLPES ENGFTVSCGT
BACU018059/1-986 PVKCHSSPGA SKAMISCSRS GKKDTCALTC PSRARFLPES ENGFTVSCGV
ENSBTAP00000012158/1-993 PVKCQSSPGA SKAMLSCNRS GKKDTCALTC PSRARFLPES ENGFTVSCGI
551 600
ENSTTRP00000008887/1-1007 PSPRAAPGRA GHTGNSTNSN HCHEAAVLTV KQRASFKIKD AKCRLHLRNK
bmy_10967T0/1-1036 PSPRAAPARA GHTGNSTNSN HCHEAAVLTV KQRASFKIKD AKCRLHLRNK
ENSP00000274938/1-993 PSPRAAPARA GHNGNSTNSN HCHEAAVLSI KQRASFKIKD AKCRLHLRNK
BACU018059/1-986 PSPRAAPARA GHTGNSTNSN HCHEAAVLTV KQRASFKIKD AKCRLHLRNK
ENSBTAP00000012158/1-993 PSPRAAPARA SHAGNSTNSN HCHEAAVLTV KQRASFKIKD AKCHLHLRNK
601 650
ENSTTRP00000008887/1-1007 GKTEEASRIL GP-------- ----GGAPCS DCQVTFIHLK CDSSRKGKGR
bmy_10967T0/1-1036 GKTEEASRIL GPGGAPEVDK ASPPGGAPCS DCQVTFIHLK CDSSRKGKGR
ENSP00000274938/1-993 GKTEEAGRIT GP-------- ----GGAPCS ECQVTFIHLK CDSSRKGKGR
BACU018059/1-986 GKTEEASRIL GP-------- ----GGAPCS DCQVTFIHLK CDSSRKGKGR
ENSBTAP00000012158/1-993 GKTEETSRIT GP-------- ----GGAPCS DCQVTFIHLK CDSSRKGKGR
651 700
ENSTTRP00000008887/1-1007 RARTPPGKEV TRLTLELEAE VRAEETTAGC GLPCLRQRME RRLKGSLKML
bmy_10967T0/1-1036 RARTPPGKEV TRLTLELEAE VRAEETTAGC GLPCLRQRME RRLKGSLKML
ENSP00000274938/1-993 RARTPPGKEV TRLTLELEAE VRAEETTASC GLPCLRQRME RRLKGSLKML
BACU018059/1-986 RARTPPGKEV TRLTLELEAE VRAEETTAGC GLPCLRQRME RRLKGSLKML
ENSBTAP00000012158/1-993 RARTPPGKEV TRLTLELEAE VRAEETTAGC GLPCLRQRME RRLKGSLKML
701 750
ENSTTRP00000008887/1-1007 RKSINQDRFL LRAG--DYEL AHKPGPVAGE RAEPVEACRP GQHRSGAKCV
bmy_10967T0/1-1036 RKSINQDRFL LRLAGLDYEL AHKPGPVAGE RVEPVEXCRP GQHRSGAKCV
ENSP00000274938/1-993 RKSINQDRFL LRLAGLDYEL AHKPGLVAGE RAEPMESCRP GQHRAGTKCV
BACU018059/1-986 RKSINQDRFL LRLAGLDYEL AHKPGPVAGE RAEPVEACRP GQHRSGAKC-
ENSBTAP00000012158/1-993 RKSINQDRFL LRLAGLDYEL AHKPGPVAGE RVEPVEACRP GQHRSGAKCV
751 800
ENSTTRP00000008887/1-1007 SCPQGTYYHG QTEQCVPCPA GTFQEREGQL SCDLCPGSDA HGPLGATNVT
bmy_10967T0/1-1036 SCPQGTYYHG QTEQCVPCPA GTFQEREGQL SCDLCPGSDA HGPLGATNVT
ENSP00000274938/1-993 SCPQGTYYHG QTEQCVPCPA GTFQEREGQL SCDLCPGSDA HGPLGATNVT
BACU018059/1-986 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000012158/1-993 SCPQGTYYHG QTEQCVPCPA GTFQEREGQL SCDLCPGSDA HGPLGATNVT
801 850
ENSTTRP00000008887/1-1007 TCAGQCSPGQ HSVDGFKPCQ PCPRGTYQPE AGRTLCFPCG GSLTTKHEGA
bmy_10967T0/1-1036 TCAGQCSPGQ HSVDGFKPCQ PCPRGTYQPE AGRTLCFPCG GSLTTKHEGA
ENSP00000274938/1-993 TCAGQCPPGQ HSVDGFKPCQ PCPRGTYQPE AGRTLCFPCG GGLTTKHEGA
BACU018059/1-986 ---GQCSPGQ HSVDGFKPCQ PCPRGTYQPE AGRTLCFPCG GSLTTKHEGA
ENSBTAP00000012158/1-993 TCAGQCSPGQ HSADGFKPCQ PCPRGTYQPE AGRTLCFPCG GGLTTKHEGA
851 900
ENSTTRP00000008887/1-1007 ASFQDCDTKV QCSPGHYYNT SIHRCIRCAM GSYQPDFRQN FCTRCPGNTS
bmy_10967T0/1-1036 ASFQDCDTKV QCSPGHYYNT SIHRCIRCAM GSYQPDFRQN FCTRCPGNTS
ENSP00000274938/1-993 ISFQDCDTKV QCSPGHYYNT SIHRCIRCAM GSYQPDFRQN FCSRCPGNTS
BACU018059/1-986 ASFQDCDTKV QCSPGHYYNT SIHRCIRCAM GSYQPDFRQN FCTRCPGNTS
ENSBTAP00000012158/1-993 ISFQDCDTKV QCSPGHYYNT SIHRCIRCAM GSYQPDFRQN FCTRCPGNTS
901 950
ENSTTRP00000008887/1-1007 TDFDGSTSVA QCKNRQCGGE LGEFTGYIES PNYPGNYPAG VECVWNINPP
bmy_10967T0/1-1036 TDFDGSTSVA QCKNRQCGGE LGEFTGYIES PNYPGNYPAG VECVWNINPP
ENSP00000274938/1-993 TDFDGSTSVA QCKNRQCGGE LGEFTGYIES PNYPGNYPAG VECIWNINPP
BACU018059/1-986 TDFDGSTSVA QCKNRQCGGE LGEFTGYIES PNYPGNYPAG VECVWNINPP
ENSBTAP00000012158/1-993 TDFDGSTSVT QCKNRQCGGE LGEFTGYIES PNYPGNYPAG VECVWNINPP
951 1000
ENSTTRP00000008887/1-1007 PKRKILIVVP EIFLPSEDEC GDVLVMRKNS SPSSITTYET CQTYERPIAF
bmy_10967T0/1-1036 PKRKILIVVP EIFLPSEDEC GDVLVMRKNS SPSSITTYET CQTYERPIAF
ENSP00000274938/1-993 PKRKILIVVP EIFLPSEDEC GDVLVMRKNS SPSSITTYET CQTYERPIAF
BACU018059/1-986 PKRKILIVVP EIFLPSEDEC GDVLVMRKNS SPSSITTYET CQTYERPIAF
ENSBTAP00000012158/1-993 PKRKILIVVP EIFLPSEDEC GDVLVMRKNS SPSSITTYET CQTYERPIAF
1001 1050
ENSTTRP00000008887/1-1007 TARSRKLWIN FKTSEANSAR GFQIPYVTYD EDYEQLVEDI VRDGRLYASE
bmy_10967T0/1-1036 TARSRKLWIN FKTSEANSAR GFQIPYVTYD EDYEQL---- ----------
ENSP00000274938/1-993 TARSRKLWIN FKTSEANSAR GFQIPYVTYD EDYEQLVEDI VRDGRLYASE
BACU018059/1-986 TARSRKLWIN FKTSEANSAR GFQIPYVTYD EDYEQLVEDI VRDGRLYASE
ENSBTAP00000012158/1-993 TARSRKLWIN FKTSEANSAR GFQIPYVTYD EDYEQLVEDI VRDGRLYASE
1051 1100
ENSTTRP00000008887/1-1007 NHQEILKDKK LIKAFFEVLA HPQNYFKYTE KHKEMLPKSF IKLLRSKVSS
bmy_10967T0/1-1036 -------DKK LIKAFFEVLA HPQNYFKYTE KHKEMLPKSF IKLLRSKVSS
ENSP00000274938/1-993 NHQEILKDKK LIKAFFEVLA HPQNYFKYTE KHKEMLPKSF IKLLRSKVSS
BACU018059/1-986 NHQEILKDKK LIKAFFEVLA HPQNYFKYTE KHKEMLPKSF IKLLRSKVSS
ENSBTAP00000012158/1-993 NHQEILKDKK LIKAFFEVLA HPQNYFKYTE KHKEMLPKSF IKLLRSKVSS
1101 1150
ENSTTRP00000008887/1-1007 FLRPYK
bmy_10967T0/1-1036 FLRPYK
ENSP00000274938/1-993 FLRPYK
BACU018059/1-986 FLRPYK
ENSBTAP00000012158/1-993 FLRPYK