KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:51 2014 Check: 00 .. Name: ENSTTRP00000008887/1-1007 Len: 1106 Check: 2484 Weight: 1.00 Name: bmy_10967T0/1-1036 Len: 1106 Check: 505 Weight: 1.00 Name: ENSP00000274938/1-993 Len: 1106 Check: 7505 Weight: 1.00 Name: BACU018059/1-986 Len: 1106 Check: 8582 Weight: 1.00 Name: ENSBTAP00000012158/1-993 Len: 1106 Check: 1210 Weight: 1.00 // 1 50 ENSTTRP00000008887/1-1007 ------MGSG RVPGLCLLVL LVHARAAQHS KAVQ------ ---------- bmy_10967T0/1-1036 MELLSFKDSW RHGGQVEAGL V--SSGIEFR KILKSEGYGR PPASGGVAVY ENSP00000274938/1-993 ------MGSG RVPGLCLLVL LVHARAAQYS KAAQ------ ---------- BACU018059/1-986 ------MGSG RVPGLCLLVL LVHARAAQHS KAVQGERLEE PGAVRVNEKF ENSBTAP00000012158/1-993 ------MGSG RVPGLCLLVL LVHARAAQHS KAVQ------ ---------- 51 100 ENSTTRP00000008887/1-1007 ---------- ---------- ---------- -DVDECVEGT DNCHIDAICQ bmy_10967T0/1-1036 ---------- ---------- ---------- -YVDECVEGT DNCHIDAICQ ENSP00000274938/1-993 ---------- ---------- ---------- -DVDECVEGT DNCHIDAICQ BACU018059/1-986 GEPWAEVTTH LRILPDFIAT PASSKDFLSS KNVDECVEGT DNCHIDAICQ ENSBTAP00000012158/1-993 ---------- ---------- ---------- -DVDECVEGT DNCHIDAICQ 101 150 ENSTTRP00000008887/1-1007 NTPRSYKCIC KSGYTGDGKH CKXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_10967T0/1-1036 NTPRSYKCIC KSGYTGDGKH CKDVDECERE DNAGCVHDCV NIPGNYRCTC ENSP00000274938/1-993 NTPRSYKCIC KSGYTGDGKH CKDVDECERE DNAGCVHDCV NIPGNYRCTC BACU018059/1-986 NTPRSYKCIC KSGYTGDGKH CKDVDECERE DNAGCVHDCV NIPGNYRCTC ENSBTAP00000012158/1-993 NTPRSYKCIC KSGYTGDGKH CKDVDECERE DNAGCVHDCV NIPGNYRCTC 151 200 ENSTTRP00000008887/1-1007 XXXXXXXXXX XXXXXVDECA EGNGGCQQSC VNMMGSYECH CREGFFLSDN bmy_10967T0/1-1036 YDGFHLAHDG HNCLDVDECA EGNGGCQQSC VNMMGSYECH CREGFFLSDN ENSP00000274938/1-993 YDGFHLAHDG HNCLDVDECA EGNGGCQQSC VNMMGSYECH CREGFFLSDN BACU018059/1-986 YDGFHLAHDG HNCLDVDECA EGNGGCQQSC VNMMGSYECH CREGFFLSDN ENSBTAP00000012158/1-993 YDGFHLAHDG HNCLDVDECA EGNGGCQQSC VNMMGSYECH CREGFFLSDN 201 250 ENSTTRP00000008887/1-1007 QHTCIQRPEE GMNCMNKNHG CAHICRETPK GGIACECRPG FELTKNQRDC bmy_10967T0/1-1036 QHTCIQRPEE GMNCMNKNHG CAHICRETPK GGIACECRPG FELTKNQRDC ENSP00000274938/1-993 QHTCIQRPEE GMNCMNKNHG CAHICRETPK GGIACECRPG FELTKNQRDC BACU018059/1-986 QHTCIQRPEE GMNCMNKNHG CAHICRETPK GGIACECRPG FELTKNQRDC ENSBTAP00000012158/1-993 QHTCIQRPEE GMNCMNKNHG CAHICRETPK GGIACECRPG FELTKNQRDC 251 300 ENSTTRP00000008887/1-1007 KLTCNYGNGG CQHTCDDTEQ GPRCGCHVKF VLHTDGKTCI GERRLEQHIP bmy_10967T0/1-1036 KLTCNYGNGG CQHTCDDTEQ GPRCGCHVKF VLHTDGKTCI ---------- ENSP00000274938/1-993 KLTCNYGNGG CQHTCDDTEQ GPRCGCHIKF VLHTDGKTCI ---------- BACU018059/1-986 KLTCNYGNGG CQHTCDDTEQ GPRCGCHVKF VLHTDGKTCI ---------- ENSBTAP00000012158/1-993 KLTCNYGNGG CQHTCDDTEQ GPRCGCHVKF VLHTDGKTCI ---------- 301 350 ENSTTRP00000008887/1-1007 PQAVSNETCA VNNGGCDSKC HDAATGVHCS CPVGFMLQPD RKTCKDIDEC bmy_10967T0/1-1036 ------ETCA VNNGGCDSKC HDAATGVHCS CPVGFMLQPD RKTCKDIDEC ENSP00000274938/1-993 ------ETCA VNNGGCDSKC HDAATGVHCT CPVGFMLQPD RKTCKDIDEC BACU018059/1-986 ------ETCA VNNGGCDSKC HDAATGVHCS CPVGFMLQPD RKTCKDIDEC ENSBTAP00000012158/1-993 ------ETCA VNNGGCDSKC HDAATGVHCS CPVGFMLQPD RKTCKDIDEC 351 400 ENSTTRP00000008887/1-1007 RLNNGGCDHI CRNTVGSFEC SCKKGYKLLI NERNCQDIDE CSFDRTCDHI bmy_10967T0/1-1036 RLNNGGCDHI CRNTVGSFEC SCKKGYKLLI NERNCQDIDE CSFDRTCDHI ENSP00000274938/1-993 RLNNGGCDHI CRNTVGSFEC SCKKGYKLLI NERNCQDIDE CSFDRTCDHI BACU018059/1-986 RLNNGGCDHI CRNTVGSFEC SCKKGYKLLI NERNCQDIDE CSFDRTCDHI ENSBTAP00000012158/1-993 RLNNGGCDHI CRNTVGSFEC SCKKGYKLLI NERNCQDIDE CSFDRTCDHI 401 450 ENSTTRP00000008887/1-1007 CVNTPGSFQC LCHHGYLLYG VTHCGDVDEC SINRGGCRFG CINTPGSYQC bmy_10967T0/1-1036 CVNTPGSFQC LCHHGYLLYG VTHCGDVDEC SINRGGCRSG CINTPGSYQC ENSP00000274938/1-993 CVNTPGSFQC LCHRGYLLYG ITHCGDVDEC SINRGGCRFG CINTPGSYQC BACU018059/1-986 CVNTPGSFQC LCHHGYLLYG VTHCGDVDEC SINRGGCRSG CINTPGSYQC ENSBTAP00000012158/1-993 CVNTPGSFQC LCRHGYLLYG VTHCGDVDEC SINRGGCRFG CVNTPGSYQC 451 500 ENSTTRP00000008887/1-1007 TCPAGQGRLH WNGKDCT--- ---------- ---------- ---------E bmy_10967T0/1-1036 TCPAGQGRLH WNGKDCTGGQ RPLLAEAGTA VSGLGVVGVL GNVEFHTEEE ENSP00000274938/1-993 TCPAGQGRLH WNGKDCT--- ---------- ---------- ---------E BACU018059/1-986 TCPAGQGRLH WNGKDCT--- ---------- ---------- ---------E ENSBTAP00000012158/1-993 TCPAGQGRLH WNGKDCT--- ---------- ---------- ---------E 501 550 ENSTTRP00000008887/1-1007 PVKCHSSPGA SKAMISCSRS GKKDTCALSC PSRARFLPES ENGFTVSCGI bmy_10967T0/1-1036 PVKCHSSPGA SKAMISCSRS GKKDTCALTC PSRARFLPES ENGFTVSCGI ENSP00000274938/1-993 PLKCQGSPGA SKAMLSCNRS GKKDTCALTC PSRARFLPES ENGFTVSCGT BACU018059/1-986 PVKCHSSPGA SKAMISCSRS GKKDTCALTC PSRARFLPES ENGFTVSCGV ENSBTAP00000012158/1-993 PVKCQSSPGA SKAMLSCNRS GKKDTCALTC PSRARFLPES ENGFTVSCGI 551 600 ENSTTRP00000008887/1-1007 PSPRAAPGRA GHTGNSTNSN HCHEAAVLTV KQRASFKIKD AKCRLHLRNK bmy_10967T0/1-1036 PSPRAAPARA GHTGNSTNSN HCHEAAVLTV KQRASFKIKD AKCRLHLRNK ENSP00000274938/1-993 PSPRAAPARA GHNGNSTNSN HCHEAAVLSI KQRASFKIKD AKCRLHLRNK BACU018059/1-986 PSPRAAPARA GHTGNSTNSN HCHEAAVLTV KQRASFKIKD AKCRLHLRNK ENSBTAP00000012158/1-993 PSPRAAPARA SHAGNSTNSN HCHEAAVLTV KQRASFKIKD AKCHLHLRNK 601 650 ENSTTRP00000008887/1-1007 GKTEEASRIL GP-------- ----GGAPCS DCQVTFIHLK CDSSRKGKGR bmy_10967T0/1-1036 GKTEEASRIL GPGGAPEVDK ASPPGGAPCS DCQVTFIHLK CDSSRKGKGR ENSP00000274938/1-993 GKTEEAGRIT GP-------- ----GGAPCS ECQVTFIHLK CDSSRKGKGR BACU018059/1-986 GKTEEASRIL GP-------- ----GGAPCS DCQVTFIHLK CDSSRKGKGR ENSBTAP00000012158/1-993 GKTEETSRIT GP-------- ----GGAPCS DCQVTFIHLK CDSSRKGKGR 651 700 ENSTTRP00000008887/1-1007 RARTPPGKEV TRLTLELEAE VRAEETTAGC GLPCLRQRME RRLKGSLKML bmy_10967T0/1-1036 RARTPPGKEV TRLTLELEAE VRAEETTAGC GLPCLRQRME RRLKGSLKML ENSP00000274938/1-993 RARTPPGKEV TRLTLELEAE VRAEETTASC GLPCLRQRME RRLKGSLKML BACU018059/1-986 RARTPPGKEV TRLTLELEAE VRAEETTAGC GLPCLRQRME RRLKGSLKML ENSBTAP00000012158/1-993 RARTPPGKEV TRLTLELEAE VRAEETTAGC GLPCLRQRME RRLKGSLKML 701 750 ENSTTRP00000008887/1-1007 RKSINQDRFL LRAG--DYEL AHKPGPVAGE RAEPVEACRP GQHRSGAKCV bmy_10967T0/1-1036 RKSINQDRFL LRLAGLDYEL AHKPGPVAGE RVEPVEXCRP GQHRSGAKCV ENSP00000274938/1-993 RKSINQDRFL LRLAGLDYEL AHKPGLVAGE RAEPMESCRP GQHRAGTKCV BACU018059/1-986 RKSINQDRFL LRLAGLDYEL AHKPGPVAGE RAEPVEACRP GQHRSGAKC- ENSBTAP00000012158/1-993 RKSINQDRFL LRLAGLDYEL AHKPGPVAGE RVEPVEACRP GQHRSGAKCV 751 800 ENSTTRP00000008887/1-1007 SCPQGTYYHG QTEQCVPCPA GTFQEREGQL SCDLCPGSDA HGPLGATNVT bmy_10967T0/1-1036 SCPQGTYYHG QTEQCVPCPA GTFQEREGQL SCDLCPGSDA HGPLGATNVT ENSP00000274938/1-993 SCPQGTYYHG QTEQCVPCPA GTFQEREGQL SCDLCPGSDA HGPLGATNVT BACU018059/1-986 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012158/1-993 SCPQGTYYHG QTEQCVPCPA GTFQEREGQL SCDLCPGSDA HGPLGATNVT 801 850 ENSTTRP00000008887/1-1007 TCAGQCSPGQ HSVDGFKPCQ PCPRGTYQPE AGRTLCFPCG GSLTTKHEGA bmy_10967T0/1-1036 TCAGQCSPGQ HSVDGFKPCQ PCPRGTYQPE AGRTLCFPCG GSLTTKHEGA ENSP00000274938/1-993 TCAGQCPPGQ HSVDGFKPCQ PCPRGTYQPE AGRTLCFPCG GGLTTKHEGA BACU018059/1-986 ---GQCSPGQ HSVDGFKPCQ PCPRGTYQPE AGRTLCFPCG GSLTTKHEGA ENSBTAP00000012158/1-993 TCAGQCSPGQ HSADGFKPCQ PCPRGTYQPE AGRTLCFPCG GGLTTKHEGA 851 900 ENSTTRP00000008887/1-1007 ASFQDCDTKV QCSPGHYYNT SIHRCIRCAM GSYQPDFRQN FCTRCPGNTS bmy_10967T0/1-1036 ASFQDCDTKV QCSPGHYYNT SIHRCIRCAM GSYQPDFRQN FCTRCPGNTS ENSP00000274938/1-993 ISFQDCDTKV QCSPGHYYNT SIHRCIRCAM GSYQPDFRQN FCSRCPGNTS BACU018059/1-986 ASFQDCDTKV QCSPGHYYNT SIHRCIRCAM GSYQPDFRQN FCTRCPGNTS ENSBTAP00000012158/1-993 ISFQDCDTKV QCSPGHYYNT SIHRCIRCAM GSYQPDFRQN FCTRCPGNTS 901 950 ENSTTRP00000008887/1-1007 TDFDGSTSVA QCKNRQCGGE LGEFTGYIES PNYPGNYPAG VECVWNINPP bmy_10967T0/1-1036 TDFDGSTSVA QCKNRQCGGE LGEFTGYIES PNYPGNYPAG VECVWNINPP ENSP00000274938/1-993 TDFDGSTSVA QCKNRQCGGE LGEFTGYIES PNYPGNYPAG VECIWNINPP BACU018059/1-986 TDFDGSTSVA QCKNRQCGGE LGEFTGYIES PNYPGNYPAG VECVWNINPP ENSBTAP00000012158/1-993 TDFDGSTSVT QCKNRQCGGE LGEFTGYIES PNYPGNYPAG VECVWNINPP 951 1000 ENSTTRP00000008887/1-1007 PKRKILIVVP EIFLPSEDEC GDVLVMRKNS SPSSITTYET CQTYERPIAF bmy_10967T0/1-1036 PKRKILIVVP EIFLPSEDEC GDVLVMRKNS SPSSITTYET CQTYERPIAF ENSP00000274938/1-993 PKRKILIVVP EIFLPSEDEC GDVLVMRKNS SPSSITTYET CQTYERPIAF BACU018059/1-986 PKRKILIVVP EIFLPSEDEC GDVLVMRKNS SPSSITTYET CQTYERPIAF ENSBTAP00000012158/1-993 PKRKILIVVP EIFLPSEDEC GDVLVMRKNS SPSSITTYET CQTYERPIAF 1001 1050 ENSTTRP00000008887/1-1007 TARSRKLWIN FKTSEANSAR GFQIPYVTYD EDYEQLVEDI VRDGRLYASE bmy_10967T0/1-1036 TARSRKLWIN FKTSEANSAR GFQIPYVTYD EDYEQL---- ---------- ENSP00000274938/1-993 TARSRKLWIN FKTSEANSAR GFQIPYVTYD EDYEQLVEDI VRDGRLYASE BACU018059/1-986 TARSRKLWIN FKTSEANSAR GFQIPYVTYD EDYEQLVEDI VRDGRLYASE ENSBTAP00000012158/1-993 TARSRKLWIN FKTSEANSAR GFQIPYVTYD EDYEQLVEDI VRDGRLYASE 1051 1100 ENSTTRP00000008887/1-1007 NHQEILKDKK LIKAFFEVLA HPQNYFKYTE KHKEMLPKSF IKLLRSKVSS bmy_10967T0/1-1036 -------DKK LIKAFFEVLA HPQNYFKYTE KHKEMLPKSF IKLLRSKVSS ENSP00000274938/1-993 NHQEILKDKK LIKAFFEVLA HPQNYFKYTE KHKEMLPKSF IKLLRSKVSS BACU018059/1-986 NHQEILKDKK LIKAFFEVLA HPQNYFKYTE KHKEMLPKSF IKLLRSKVSS ENSBTAP00000012158/1-993 NHQEILKDKK LIKAFFEVLA HPQNYFKYTE KHKEMLPKSF IKLLRSKVSS 1101 1150 ENSTTRP00000008887/1-1007 FLRPYK bmy_10967T0/1-1036 FLRPYK ENSP00000274938/1-993 FLRPYK BACU018059/1-986 FLRPYK ENSBTAP00000012158/1-993 FLRPYK