KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:54 2014 Check: 00 .. Name: ENSTTRP00000004698/1-199 Len: 360 Check: 9164 Weight: 1.00 Name: BACU018963/1-197 Len: 360 Check: 7581 Weight: 1.00 Name: bmy_05042T0/1-227 Len: 360 Check: 5249 Weight: 1.00 Name: ENSP00000348461/1-211 Len: 360 Check: 267 Weight: 1.00 Name: ENSBTAP00000012170/1-180 Len: 360 Check: 2990 Weight: 1.00 // 1 50 ENSTTRP00000004698/1-199 ---------- --AVGKTCLL ISYTTNAFPG EYIPTVFDNY SANVMVDGKP BACU018963/1-197 ---------- --AVGKTCLL ISYTTNAFPG EYIPTVFDNY SANVMVDGKP bmy_05042T0/1-227 ---------- ---------- ---------- ---------- ---------- ENSP00000348461/1-211 MQAIKCVVVG DGAVGKTCLL ISYTTNAFPG EYIPTVFDNY SANVMVDGKP ENSBTAP00000012170/1-180 ---------- --AVGKTCLL ISYTTNAFPG EYIPTVFDNY SANVMVDGKP 51 100 ENSTTRP00000004698/1-199 VNLGLWDTAG QEDYDRLRPL SYPQTVGETY GKDIPSRGKD KPIADVFLIC BACU018963/1-197 VNLGLWDTAG QEDYDRLRPL SYPQTVGETY GKDIPSRGKD KPIADVFLIC bmy_05042T0/1-227 ---------- ---------- ---------- ---------- ---------- ENSP00000348461/1-211 VNLGLWDTAG QEDYDRLRPL SYPQTVGETY GKDITSRGKD KPIADVFLIC ENSBTAP00000012170/1-180 VNLGLWDTAG QEDYDRLRPL SYPQT----- ---------- ----DVFLIC 101 150 ENSTTRP00000004698/1-199 FSLVSPASFE NVRAKXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU018963/1-197 FSLVSPASFE NVRAKVKPGL FCQKQSSLRG AGGWGSSLLS PLSQTSRAVS bmy_05042T0/1-227 ---------- ---------- ---------- ---MKLDRRD DKDTIEKLKE ENSP00000348461/1-211 FSLVSPASFE NVRAKWYPEV RHHCPNTPII LVGTKLDLRD DKDTIEKLKE ENSBTAP00000012170/1-180 FSLVSPASFE NVRAKWYPEV RHHCPNTPII LVGTKLDLRD DKDTIEKLKE 151 200 ENSTTRP00000004698/1-199 XXXXXXXXXX XXXXXXXXGA VKYLECSALT QRGLKTVFDE AIRAVLCPPP BACU018963/1-197 RGVSP-RLQA GWA-HPAAGA VKYLECSALT QRGLKTVFDE AIRAVLCPPP bmy_05042T0/1-227 KTLIPITYPQ GLAMAKEIRA VGYLECSALT QQGHKTVFDE AIGVVLCSPP ENSP00000348461/1-211 KKLTPITYPQ GLAMAKEIGA VKYLECSALT QRGLKTVFDE AIRAVLCPPP ENSBTAP00000012170/1-180 KKLTPITYPQ GLAMAKEIGA VKYLECSALT QRGLKTVFDE AIRAVLCPPP 201 250 ENSTTRP00000004698/1-199 VKKRKRKCLL L--------- ---------- ---------- ---------- BACU018963/1-197 VKKRKRKCLL L--------- ---------- ---------- ---------- bmy_05042T0/1-227 VKKRKRKCLL FCSAHLDPSL FCALFSSKLA LLTSSSGILL CLQLATAPSQ ENSP00000348461/1-211 VKKRKRKCLL L--------- ---------- ---------- ---------- ENSBTAP00000012170/1-180 VKKRKRKCLL L--------- ---------- ---------- ---------- 251 300 ENSTTRP00000004698/1-199 ---------- ---------- ---------- ---------- ---------- BACU018963/1-197 ---------- ---------- ---------- ---------- ---------- bmy_05042T0/1-227 GSKTTEALAL GPAGPLSRKA AKQKFTSLRP ECQASLLQFL VVTEPPVEEK ENSP00000348461/1-211 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012170/1-180 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000004698/1-199 ---------- ---------- ---------- ---------- ---------- BACU018963/1-197 ---------- ---------- ---------- ---------- ---------- bmy_05042T0/1-227 HTENFISCPW ASQACDPTLV KKDPHPLSSR QLLQSPNWTS YLQTHLPLCC ENSP00000348461/1-211 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012170/1-180 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000004698/1-199 ---------- BACU018963/1-197 ---------- bmy_05042T0/1-227 PKSILPMVPK ENSP00000348461/1-211 ---------- ENSBTAP00000012170/1-180 ----------