KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:54 2014 Check: 00 .. Name: ENSP00000297056/1-672 Len: 703 Check: 6015 Weight: 1.00 Name: ENSBTAP00000012173/1-669 Len: 703 Check: 6339 Weight: 1.00 Name: ENSTTRP00000004702/1-669 Len: 703 Check: 899 Weight: 1.00 Name: bmy_19186T0/1-642 Len: 703 Check: 5870 Weight: 1.00 Name: BACU012129/1-669 Len: 703 Check: 9228 Weight: 1.00 // 1 50 ENSP00000297056/1-672 ---------- ---------- ---------- -MPGMVLFGR RWAIASDDLV ENSBTAP00000012173/1-669 ---------- ---------- ---------- -MPGMVLFGR RWAIASDDLV ENSTTRP00000004702/1-669 ---------- ---------- ---------- -MPGMVLFGR RWAIASDDLV bmy_19186T0/1-642 AVRRWRPEGA GLREAARSRR AGPSPGGGFF AMPGMVLFGR RWAIASDDLV BACU012129/1-669 ---------- ---------- ---------- -MPGMVLFGR RWAIASDDLV 51 100 ENSP00000297056/1-672 FPGFFELVVR VLWWIGILTL YLMHRGKLDC AGGALLSSYL IVLMILLAVV ENSBTAP00000012173/1-669 FPGVFELLLR VLWWVGILML YLMHRGKLDC PGGVLLSSYL IVLLVLLAII ENSTTRP00000004702/1-669 FPGVFELFVR VLWWIGILTL YLMHRGKLDC PGGVLLSSYL IVLIILLAVI bmy_19186T0/1-642 FPGVFELFVR VLWWIGILTL YLMHRGKLDC PGGVLLSR-- ---------- BACU012129/1-669 FPGVFELFVR VLWWIGILTL YLVHRGKLDC PGGVLLSSYL IVLIILLAVI 101 150 ENSP00000297056/1-672 ICTVSAIMCV SMRGTICNPG PRKSMSKLLY IRLALFFPEM VWASLGAAWV ENSBTAP00000012173/1-669 IGTVSAIVCV SMKGTICNPG PRKSMSKLLY VRLALFLPEM VWASLGAAWI ENSTTRP00000004702/1-669 ICTVSAIVCV SMKGTICNPG PRKSMSKLLY VRLALFLPEM VWASLGAAWI bmy_19186T0/1-642 ---------- ----TICNPG PRKSMSKLLY VRLALFLPEM VWASLGAAWI BACU012129/1-669 IGTVSAIVCV SMKGTICNPG PRKSMSKLLY VRLALFLPEM VWASLGAAWI 151 200 ENSP00000297056/1-672 ADGVQCDRTV VNGIIATVVV SWIIIAATVV SIIIVFDPLG GKMAPYSSAG ENSBTAP00000012173/1-669 ADGIQCDRTV GNGIIATVVV SWLIIASTVL TILIVFDPLG GKAAPGAPLG ENSTTRP00000004702/1-669 EDGVQCDRTV GNGIIATVAV SWIIIASTVV TIVIVFDPLG GKMAPYPPAG bmy_19186T0/1-642 EDGVQCDRTV GNGIIATVAV SWIIIASTVV IIVIVFDPLG GRMAPYPPAG BACU012129/1-669 EDGVQCDRTV GNGIIATVAV SWIIVASTAV IIVIVFDPLG GKMAPYPPAG 201 250 ENSP00000297056/1-672 PSHLDSHDSS QLLNGLKTAA TSVWETRIKL LCCCIGKDDH TRVAFSSTAE ENSBTAP00000012173/1-669 PQPLDSRESS QLLSGLRTAA TGVWETRVRL LCCCIGRDDH TRVAFSSTAE ENSTTRP00000004702/1-669 PHHLDSRESS QLLNGLKTAA TSVWETRIKF LCCCVGKDDR TRVAFSSTAE bmy_19186T0/1-642 PHHLDSHESS QLLNGLKTAA TSVWETRIKF LCCCIGKDDR TRVAFSSTAE BACU012129/1-669 PHHLDSHESS QLLNGLKTAA TSVWETRIKF LCCCIGKDDR TRVAFSSTAE 251 300 ENSP00000297056/1-672 LFSTYFSDTD LVPSDIAAGL ALLHQQQDNI RNNQEPAQVV CHAPGSSQEA ENSBTAP00000012173/1-669 LFSTYFSDTD LVPSDIAAGL ALLHQQQDHA RSPPEPTEVV THSPGPFQEA ENSTTRP00000004702/1-669 LFSTYFSDTD LVPSDIAAGL ALLHQQQDSI RNNQEPDEVV SHSPGPSQEA bmy_19186T0/1-642 LFSTYFSDTD LVPSDIAAGL ALLRQQQDNI RNNQEPDQVV SHSPGPSQEA BACU012129/1-669 LFSTYFSDTD LVPSDIAAGL ALLHQQQDNI RNNQEPDEVV SHSPGSSQEA 301 350 ENSP00000297056/1-672 DLDAELENCH HYMQFAAAAY GWPLYIYRNP LTGLCRIGGD CCRSRTTDYD ENSBTAP00000012173/1-669 DLDAELENCH HYMQFAAAAY GWPLYVYRNP FTGLCRVGGD CCRCRTTDYD ENSTTRP00000004702/1-669 DLDAELENCH HYMQFAAAAY GWPLYIYRNP FTGLCRIGGD CFRSRTTDYD bmy_19186T0/1-642 DLDAELENCH HYMQFAAAAY GWPLYIYRNP FTGLCRIGGD CCRSRTTDYD BACU012129/1-669 DLDAELENCH HYMQFAAAAY GWPLYIYRNP FTGLCRIGGD CCRSRTTDYD 351 400 ENSP00000297056/1-672 LVGGDQLNCH FGSILHTTGL QYRDFIHVSF HDKVYELPFL VALDHRKESV ENSBTAP00000012173/1-669 LVGGDQLNCH FSSILQTTGL QHRDFIHISF HDKVYELPFL VALDHRKESV ENSTTRP00000004702/1-669 LVGGDQLNCH FGSILQTTGL QYRDFIHVSF HDKVYELPFL VALDHRKESV bmy_19186T0/1-642 L--------- ---------- ---------- ---VYELPFL VALDHRKESV BACU012129/1-669 LVGGDQLTCH FGSILQTTGL QYRDFIHVSF HDKVYELPFL VALDHRKESV 401 450 ENSP00000297056/1-672 VVAVRGTMSL QDVLTDLSAE SEVLDVECEV QDRLAHKGIS QAARYVYQRL ENSBTAP00000012173/1-669 VVAIRGTMSL QDILTDLSAE SEPLDIECEA QDCWAHKGIS QAARYVYRRL ENSTTRP00000004702/1-669 VVAVRGTMSL QDILTDLSAE SEPVDLECEV QDCWAHKGIS QAARYVYRRL bmy_19186T0/1-642 VVAVRGTMSL QDILTDLSAE SEPLDLECEV QDSWAHKGIS QAARYVYQRL BACU012129/1-669 VVAVRGTMSL QDILTDLSAE SEPLDLECEV QDCWAHKGIC QAARYVYRRL 451 500 ENSP00000297056/1-672 INDGILSQAF SIAPEYRLVI VGHSLGGGAA ALLATMLRAA YPQVRCYAFS ENSBTAP00000012173/1-669 VNDGILSQAF SIAPEYRLVV VGHSLGAGAA ALLALMLKSP YPQVRCYAFS ENSTTRP00000004702/1-669 INDGILSQAF SIAPEYRLVI VGHSLGAGAA ALLTIMLRSP YPRVRCYAFS bmy_19186T0/1-642 INDGILSQAF SIAPEYRLVI VGHSLGAGAA ALLTIMLRNP YPRVRCYAFS BACU012129/1-669 INDGILSQAF SIAPEYRLVI VGHSLGAGAA ALLTIMLRNP YPQVRCYAFS 501 550 ENSP00000297056/1-672 PPRGLWSKAL QEYSQSFIVS LVLGKDVIPR LSVTNLEDLK RRILRVVAHC ENSBTAP00000012173/1-669 PPRGLLSKSL YEYSKTFIVS LVLGKDVIPR LSVTNLEDLK RRILRVIAHC ENSTTRP00000004702/1-669 PPRGLLSKSL YEYSKTFIVS LVLGKDVIPR LSVTNLEDLK RRILRVIAHC bmy_19186T0/1-642 PPRGLLSKSL CEYSKTFIVS LVLGKDVIPR LSVTNLEDLK RRILRVIAHC BACU012129/1-669 PPRGLLSKSL CEYSKTFIVS LVLGKDVIPR LSLTNLEDLK RRILRVIAHC 551 600 ENSP00000297056/1-672 NKPKYKILLH GLWYELFGGN PNNLPTELDG GDQEVLTQPL LGEQSLLTRW ENSBTAP00000012173/1-669 NKPKYKILLR GCWYELFGGS PEDLPTELDG GD---LTQPL LGEHSLLVHG ENSTTRP00000004702/1-669 NKPKYKILLR ACWYELFGGH PEDLPTELDG GD---LTQPL LGERSLLAHG bmy_19186T0/1-642 NKPKYKILLR GCWYELFGGH PEELPTELDG GD---LTQPL LGERSLLAHG BACU012129/1-669 NKPKYKILLR GCWYELFGGH PEDLPTELDG GD---LTQPL LGERSLLAHG 601 650 ENSP00000297056/1-672 SPAYSFSSDS PLDSSPKYPP LYPPGRIIHL QEEGASGRFG CCSAAHYSAK ENSBTAP00000012173/1-669 SPAYSFSSES PLESPTKYPP LYPPGRIIHL EEEGTSGSCS CSPAARYTVR ENSTTRP00000004702/1-669 SPAYSFSSDS PLESPTKYPP LYPPGRIIHL EEVGTSGRFS CYPAARYSVK bmy_19186T0/1-642 SPAYSFSSDS PLESPSKYPP LYPPGRIIHL EEAGTSGRCS CCPAARYSVK BACU012129/1-669 SPTYSFSSDS PLESPSKYPP LYPPGRIIHL EEVGTSGRFS CYPAARYSVK 651 700 ENSP00000297056/1-672 WSHEAEFSKI LIGPKMLTDH MPDILMRALD SVVSDRAACV SCPAQGVSSV ENSBTAP00000012173/1-669 WAHESEFSRI LIGPKMLTDH MPDILMRVLD HVVSDRAACV SCPAQGGSSV ENSTTRP00000004702/1-669 WSHESEFSKI LIGPKMLTDH MPDILMRALD SVVSDRAACV SCPTQGGSSV bmy_19186T0/1-642 WSHESEFSKI LIGPKMLTDH MPDILMRALD SVVSDRAACV SCPTQGGSSV BACU012129/1-669 WSHESEFSKI LIGPKMLTDH MPDILMRALD SAVSDRAACV SCPTQGGSSV 701 750 ENSP00000297056/1-672 DVA ENSBTAP00000012173/1-669 DQA ENSTTRP00000004702/1-669 EVA bmy_19186T0/1-642 DVA BACU012129/1-669 DVA