KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:58 2014 Check: 00 .. Name: ENSP00000341159/1-558 Len: 735 Check: 2574 Weight: 1.00 Name: ENSBTAP00000012196/1-484 Len: 735 Check: 6338 Weight: 1.00 Name: ENSTTRP00000015884/1-485 Len: 735 Check: 9152 Weight: 1.00 Name: bmy_04296T0/1-549 Len: 735 Check: 1078 Weight: 1.00 Name: BACU020480/1-480 Len: 735 Check: 618 Weight: 1.00 // 1 50 ENSP00000341159/1-558 MPWRRRRNRV SALEGGREEE APPEAAAVPP ALLTSPQQTE AAAERILLRG ENSBTAP00000012196/1-484 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015884/1-485 ---------- ---------- ---------- ---------- ---------- bmy_04296T0/1-549 ---------- ---------- ---------- ---------- ---------- BACU020480/1-480 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000341159/1-558 IFEIGRDSCD VVLSERALRW RPIQPERPAG DSKYDLLCKE EFIELKDIFS ENSBTAP00000012196/1-484 ---------- ---------- --------SG DSKYDFLHKE EFVELKDIFS ENSTTRP00000015884/1-485 ---------- ---------- ---QPERP-G DSKYNFLHKE EFIELKDIFS bmy_04296T0/1-549 ---------- ---------- ---------- -------MSE DMVE------ BACU020480/1-480 ---------- ---------- ---------G DSKYNFLHKE EFIELKDIFS 101 150 ENSP00000341159/1-558 VKLKRRCSVK QQRSGTLLGI TLFICLKKEQ NKLKNSTLDL INLSEDHCDI ENSBTAP00000012196/1-484 VKLKRRYSIK QQGSGTLLGI TLFICLKTEK NKLKDSTLDL INLSEDHCDI ENSTTRP00000015884/1-485 VKLKRRYSVK QQRSGTLLGI TLFICLKKEQ NKLKDSTLDL INLSEDHCDV bmy_04296T0/1-549 ---------- ----GGLQGT REW------- ---------- ---------S BACU020480/1-480 VKLKRRYSVK QQRSGTLLGI TLFICLKKEQ NKLKDSTLDL INLSEDHCDV 151 200 ENSP00000341159/1-558 WFRQFKKILA GFPNRPKSLK ILLNPQSHKK EATQVYYEKV EPLLKLAGIK ENSBTAP00000012196/1-484 WFRQFKKILA GFSNRPKSLK ILLNPQSHKK EATQVYYEKV EPLLKIAGIK ENSTTRP00000015884/1-485 WFRQFKKILA GFSDRPKSLK IVLNPQSHKK EATQVYYEKV EPLLKIAGIK bmy_04296T0/1-549 WRTPSQS--- -FSDRPKSLK IVLNPQSHKK EATQVYYEKV EPLLKIAGIK BACU020480/1-480 WFRQFKKILA GFSDRPKSLK IVLNPQSHKK EATQVYYEKV EPLLKIAGIK 201 250 ENSP00000341159/1-558 TDVTIMEYEG HALSLLKECE LQGFDGG-HR KPLFAIH-WS VQRLFTGMQT ENSBTAP00000012196/1-484 TDVTITEYEG HALSLLKECE LQGFDGTVHR NPEGGIIYWS YGKFFTGMQT ENSTTRP00000015884/1-485 TDVTVTEYEG HAVSLLKECE LQGFDGR-H- KLLFAIHCWC V-KLFTGMQT bmy_04296T0/1-549 TDVTVTEYEG HAVSLLKECE LQGFDG---- ---------- ---------- BACU020480/1-480 TDVTVTEYEG HAVSLLKECE LQGFDGQ-FK KSNWGNHAYQ LPTLICCIVL 251 300 ENSP00000341159/1-558 LEPSVVCVGG DGSASEVAHA LLLRAQKNAG METDRILTPV RAQLPLGLIP ENSBTAP00000012196/1-484 LETSVVCVGG DGSASEVAHA LLLRAQKNAG LETDSILTPV GAQLPLGVIP ENSTTRP00000015884/1-485 LETSVVCVGG DGSASEVAHA LLLSAQKNAG VETDSILTPV RAQLPLGVIP bmy_04296T0/1-549 ----VVCVGG DGSASEVAHA LLLSAQKNAG VETDSILTPV RAQLPLG--- BACU020480/1-480 KHSFVVCVGG DGSASEVAHA LLLSAQKNTG VETDSILTPV RAQLPLGVIP 301 350 ENSP00000341159/1-558 AG-STNVLAH SLHGVPHVIT ATLHIIMGHV QLVDVCTFST AGKLLRFGFS ENSBTAP00000012196/1-484 AG-STNVLAH SLHGVSHVVT ATLHIIMGHI QPVDVCTFST IGKFLRFGFS ENSTTRP00000015884/1-485 AG-STNVLAH SLHGISHVVT ATLHIIMGHI QPVDVCTFST TGKFLRFGFS bmy_04296T0/1-549 ---STNVLAH SLHGISHVVT ATLHIIMGHI QPVDVCTFST TGKFLRFGFS BACU020480/1-480 AGRSTNVLAH SLHGISHVVT ATLHIIMGHI QPVDVCTFST TGKFLRFGFS 351 400 ENSP00000341159/1-558 AMFGFGGRTL ALAEKYRWMS PNQRRDFAVV KALAKLKAED CEISFLPFNS ENSBTAP00000012196/1-484 AMFGFGGRAL AVAENHRWMS PNQRMDFAIM KALAKLKPEE CEISFLPFNS ENSTTRP00000015884/1-485 AMFGFGGRAL ALAEKHRWMS PNQRMDFAVI KALAKLKPEE CEISFLPVND bmy_04296T0/1-549 AMFGFGGRAL ALAEKHRWMS PNQRMDFAVI KALAKLRPEE CEISFLPFND BACU020480/1-480 AMFGFGGRAL ALAEKHRWMS PNQRMDFAVI KALAKLRPEE CEISFLPFND 401 450 ENSP00000341159/1-558 SDDVQERRAQ GSPKSDCNDQ WQMIQGQFLN VSIMAIPCLC SVAPRGLAPN ENSBTAP00000012196/1-484 SQDLEERRAQ GYPKSDCNNQ WQMIQGQFLN VSIMAIPCQC SVAPRGLAPN ENSTTRP00000015884/1-485 PQDLGERRAQ GSLKPDCNDQ WQMIQGQFLN VSIMAIPCLC SVAPRGLAPN bmy_04296T0/1-549 PQDLEERRAQ GSPKSDCNDQ WQMIQGQFLN VSIMAIP--- ---------- BACU020480/1-480 PQDLEERRAQ GSPKSDCNDQ WQMIQGQFLN VSIMAIPCLC SVAPRGLAPN 451 500 ENSP00000341159/1-558 TRLNNGSMAL IIARNTSRPE FIKHLKRYAS VKNQFNFPFV ETYTVEEVKV ENSBTAP00000012196/1-484 TRLNNGSMAL ITARNTSRPE FIKHLKRYAS IKNQFNFPFV DTYTVEEVKV ENSTTRP00000015884/1-485 TRLNNGSMAL IISRNTSRPE FIKHLKRYAS VKNQFNFPFV ETYTVEEVKV bmy_04296T0/1-549 --LNNGSMAL IIARNTSRPE FIKHLKRYAS VKNQFNFPFV ETYTVEEVKV BACU020480/1-480 TRLNNGSMAL IIARNTSRPE FIKHLKRYAS VKNQFNFPFV ETYTVEEVKV 501 550 ENSP00000341159/1-558 HPRNNTGGYN PEEEE--DET ASENCFPWNV DGDLMEVASE VHIRLHPRLI ENSBTAP00000012196/1-484 CPKSNSSGHH PEEDHGPHET ASGNCFPWNV DGDLMQVASE VHVRVHPRLI ENSTTRP00000015884/1-485 HPRSNSSGHN PEEEDVPHET ATGSSFPWNV DGDLMEVASE VHVRVHPRLI bmy_04296T0/1-549 HPRSNSSGHN PEEEDGPHET ATGSSFPWNV DGDLMEVASE VHVRVHPRLI BACU020480/1-480 HPRSNSSGHN PEEEDGPHET ATGSSFPWNV DGDLMEVASE VHVRVHPRLI 551 600 ENSP00000341159/1-558 SLYGGSMEEM IPK------- ---------- ---------- ---------- ENSBTAP00000012196/1-484 NLYGRSMEEM NDS------- ---------- ---------- ---------- ENSTTRP00000015884/1-485 NLYGKSMEEM IPK------- ---------- ---------- ---------- bmy_04296T0/1-549 NLYGNSMEEM NDSKPPICEQ ITYLQELSSL RKTESCWQGP RMKKSFSIVL BACU020480/1-480 NLYGKSMEEM ---------- ---------- ---------- ---------- 601 650 ENSP00000341159/1-558 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012196/1-484 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015884/1-485 ---------- ---------- ---------- ---------- ---------- bmy_04296T0/1-549 NLLLYFHEEE NALIVLVKTH FILTFEEKGI TSKQEFVYLL NLIRENIFQT BACU020480/1-480 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000341159/1-558 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012196/1-484 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015884/1-485 ---------- ---------- ---------- ---------- ---------- bmy_04296T0/1-549 SLKDLLEMSH YLFGGINFTK ASTYVTWESQ VGFERIKNGI LSGLTMKFKQ BACU020480/1-480 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000341159/1-558 ---------- ---------- ---------- ----- ENSBTAP00000012196/1-484 ---------- ---------- ---------- ----- ENSTTRP00000015884/1-485 ---------- ---------- ---------- ----- bmy_04296T0/1-549 CGSAFMQYLK RIQKSYVKIS TFFKKMAKIF RWLNI BACU020480/1-480 ---------- ---------- ---------- -----