KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:58 2014 Check: 00 .. Name: ENSTTRP00000002079/1-468 Len: 517 Check: 1473 Weight: 1.00 Name: ENSP00000403117/1-514 Len: 517 Check: 5970 Weight: 1.00 Name: ENSBTAP00000012206/1-468 Len: 517 Check: 5027 Weight: 1.00 Name: bmy_21982T0/1-376 Len: 517 Check: 4278 Weight: 1.00 Name: BACU000455/1-502 Len: 517 Check: 467 Weight: 1.00 // 1 50 ENSTTRP00000002079/1-468 ---------- ---------- ---------- ---------- ---------M ENSP00000403117/1-514 MGVALRDLPG RHVSSRSHVT AVLTVFHGRC FLPGFGVVTT FPSPSPAGAM ENSBTAP00000012206/1-468 ---------- ---------- ---------- ---------- ---------M bmy_21982T0/1-376 ---------- ---------- ---------- ---------- ---------- BACU000455/1-502 ---------- -----MSNCG HVSTVFAGLG QRLLPGVAVA VVSRSPVGPM 51 100 ENSTTRP00000002079/1-468 EEEEEEVRAL LPGGPDKAGR GAPVTPPAPG ALPALCDPSR LAHRLLVLLL ENSP00000403117/1-514 EEEDEEARAL LAGGPDEADR GA---PAAPG ALPALCDPSR LAHRLLVLLL ENSBTAP00000012206/1-468 EDEEEEARAL LPGGSDEAGR ETRAPPAASG ALQALCDPSH LAHRLVVLLL bmy_21982T0/1-376 ---------- ---------- ---------- ---------- ---------- BACU000455/1-502 EEEEEEARAL LPGGPNEAGR GAPVTPPAPG ALPALCDPSR LAHRLLVLLL 101 150 ENSTTRP00000002079/1-468 MCFLGFGSYF CYDNPAALQT QVKRDMQVNT TKFMLLYAWY SWPNVVLCFF ENSP00000403117/1-514 MCFLGFGSYF CYDNPAALQT QVKRDMQVNT TKFMLLYAWY SWPNVVLCFF ENSBTAP00000012206/1-468 MCFLGFGSYF CYDNPAALQI QVKRDMQVNT TKFMLLYAWY SWPNVVLCFF bmy_21982T0/1-376 ---------- ---------- -----MQVNT TKFMLLYAWY SWPNVVLCFF BACU000455/1-502 MCFLGFGSYF CYDNPAALQT QVKRDMQVNT TKFMLLYAWY SWPNVVLCFF 151 200 ENSTTRP00000002079/1-468 GGFLVDRVFG IRWGTIIFSC FVCVGQVVFA LGGIFNAFWL MEFGRFVFGI ENSP00000403117/1-514 GGFLIDRVFG IRWGTIIFSC FVCIGQVVFA LGGIFNAFWL MEFGRFVFGI ENSBTAP00000012206/1-468 GGFLIDRVFG IRWGTIIFSC FVCIGQVVFA LGGIFNAFWL MELGRFVFGI bmy_21982T0/1-376 GGFLVDRVFG IRWGTIIFSC FVCVGQVVFA XGGIFRAFWL MEFGRFVFGI BACU000455/1-502 GGFLVDRVFG IRWGTIIFSC FVCVGQVVFA LGGIFRAFWL MEFGRFVFGI 201 250 ENSTTRP00000002079/1-468 GGESLAVAQN TYAVSWFKGK ELNLVFGLQL SMARIGSTVN MNLMGWLYSK ENSP00000403117/1-514 GGESLAVAQN TYAVSWFKGK ELNLVFGLQL SMARIGSTVN MNLMGWLYSK ENSBTAP00000012206/1-468 GGESLAVAQN TYAVSWFKGK ELNLVFGLQL SMARIGSTVN MNLMGWLYSK bmy_21982T0/1-376 GGESLAVAQN TYAVSWFKGK ELNLVFGLQL SMARIGSTVN MNLMGWLYSK BACU000455/1-502 GGESLAVAQN TYAVSWFKGK ELNLVFGLQL SMARIGSTVN MNLMGWLYSK 251 300 ENSTTRP00000002079/1-468 VEASLGSAGH TTLGVTLIIG GITCILSLVC ALALAYLDQR AERILHKEQG ENSP00000403117/1-514 IEALLGSAGH TTLGITLMIG GITCILSLIC ALALAYLDQR AERILHKEQG ENSBTAP00000012206/1-468 VEASLGSAGH TTLGVTLMIG GITCILSLVC ALALAYLDQR AERILHKEQG bmy_21982T0/1-376 VEASLGSPGH TTLGVTLMIG GITCILSLVC ALALAYLDQR AERILHKEQG BACU000455/1-502 VEASLGSPGH TTLGVTLMIG GITCILSLVC ALALAYLDQR AERILRKEQG 301 350 ENSTTRP00000002079/1-468 KTGEVIKLTD VKDFSFPLWL IFIICVGYYV AVFPFIGLGK VFFTEKFGFS ENSP00000403117/1-514 KTGEVIKLTD VKDFSLPLWL IFIICVCYYV AVFPFIGLGK VFFTEKFGFS ENSBTAP00000012206/1-468 KTGEVIKLTD VKDFSLPLWL IFIICVCYYV AIFPFIGLVK VFFTEKFGFS bmy_21982T0/1-376 KTGEVIKLTD VKDFSFPLWL IFIICVGYYV AVFPFIGLGK VFFTEKFGFS BACU000455/1-502 KTGEVIKLTD VKDFSFPLWL IFIICVGYYV AVFPFIGLGK VFFTEKFGFS 351 400 ENSTTRP00000002079/1-468 SQAASAINSI VYVISAPMSP IFGLLVDKTG KNIIWVLCAV VTALASHMML ENSP00000403117/1-514 SQAASAINSV VYVISAPMSP VFGLLVDKTG KNIIWVLCAV AATLVSHMML ENSBTAP00000012206/1-468 SQAASAINSV VYVISAPMSP IFGLLVDKTG KNIIWVLCAV VTTLASHIML bmy_21982T0/1-376 SQAASAINSI VYVISAPMSP XFGLLVDKTG KNIIWVLCAV VTTLASHMML BACU000455/1-502 SQAASAINSI VYVISAPMSP VFGLLVDKTG RNIIWVLCAV VTTLASHMML 401 450 ENSTTRP00000002079/1-468 AFTLWNPWIA MCLLGLSYSL LACALWPMVA FVVPEHQLGT AYGFMQSIQN ENSP00000403117/1-514 AFTMWNPWIA MCLLGLSYSL LACALWPMVA FVVPEHQLGT AYGFMQSIQN ENSBTAP00000012206/1-468 AFTLWNPWIA MCLLGLSYSL LACALWPMVA FVVPEHQLGT AYGFMQSIQN bmy_21982T0/1-376 AFTLWNPWIA MCLLGLSYSL LACALWPMVA FVVPEHQLGT AYGFMQSIQN BACU000455/1-502 AFTLWNPWIA MCLLGLSYSL LACALWPMVA FVVPEHQLGT AYGFMQSIQN 451 500 ENSTTRP00000002079/1-468 LGLAVISIIA GMILDTWGYL FLEVFFIACV SFSLLSVLLL YLVNRAQXXX ENSP00000403117/1-514 LGLAIISIIA GMILDSRGYL FLEVFFIACV SLSLLSVVLL YLVNRAQGGN ENSBTAP00000012206/1-468 LGLAVISIIA GMILDTRGYL FLEVFFIACV SLSLLSVVLL YMVNHAQGGN bmy_21982T0/1-376 LGLAVISIIA GMILDTWGYL FLEVFFIACV S--------- -------CGN BACU000455/1-502 LGLAVISIIA GMILDTWGYL FLEVFFIACV SFSLLSVVLL YLVNRAQGGN 501 550 ENSTTRP00000002079/1-468 XXXXXXXXXX XXXXXXX ENSP00000403117/1-514 LNYSARQREE IKFSHTE ENSBTAP00000012206/1-468 LNYSAKKREE MKLSHEE bmy_21982T0/1-376 LNYSARQREE IKLSHAE BACU000455/1-502 LNYSARQREE IKLSHAE