KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:46:00 2014 Check: 00 .. Name: ENSBTAP00000012210/1-1431 Len: 1504 Check: 7813 Weight: 1.00 Name: ENSP00000192788/1-1440 Len: 1504 Check: 2150 Weight: 1.00 Name: ENSTTRP00000007416/1-1443 Len: 1504 Check: 3106 Weight: 1.00 Name: bmy_10962T0/1-1404 Len: 1504 Check: 5684 Weight: 1.00 Name: BACU018063/1-1348 Len: 1504 Check: 7621 Weight: 1.00 // 1 50 ENSBTAP00000012210/1-1431 ---------- ---------- ---------- ---------- ---------- ENSP00000192788/1-1440 ---------- ----MAGIIK K--------- ---------- ---------- ENSTTRP00000007416/1-1443 ---------- ----MAGLIN K--------- ---------- ---------- bmy_10962T0/1-1404 MDKKLQPYSR ALLHSIGLAK QFIRVFHNTL LKNPNELFGQ PNTICYLVLV BACU018063/1-1348 ---------- ----MAGLIK K--------- ---------- ---------- 51 100 ENSBTAP00000012210/1-1431 ---------- ---------- -LFRFTKNLS PDKINLSTLK GEGQLTNLEL ENSP00000192788/1-1440 ---------- ------QILK HLSRFTKNLS PDKINLSTLK GEGQLTNLEL ENSTTRP00000007416/1-1443 ---------- ------QILK HLSRFTKNLS PDKINLSTLK GEGQLTNLEL bmy_10962T0/1-1404 LYGDSDISKG SIATAIAISP EFPSFTKNLS PDKINLSTLK GEGQLTNLEL BACU018063/1-1348 ---------- ------QILK HLSRFTKNLS PDKINLSTLK GEGQLTNLEL 101 150 ENSBTAP00000012210/1-1431 DEEVLQNVLE LPTWLAITRV YCNRASIRIQ WTKLKTHPIC LCLDKVEVEM ENSP00000192788/1-1440 DEEVLQNVLE LPTWLAITRV YCNRASIRIQ WTKLKTHPIC LCLDKVEVEM ENSTTRP00000007416/1-1443 DEEVLQNVLE LPTWLAITRV YCNRASIRIQ WTKLKTHPIC LXXXXXXXXX bmy_10962T0/1-1404 DEEVLQNVLE LPTWLAITRV YCNRASIRIQ WTKLKTHPIC LVVE------ BACU018063/1-1348 DEEVLQNVLE LPTWLAITRV YCNRASIR-- ---------- -CLDKVEVEM 151 200 ENSBTAP00000012210/1-1431 KTCEEPRPPN GQSPIALASG QSEYGFAEKV VEGMFIMVNS ITIKIHSKAF ENSP00000192788/1-1440 KTCEDPRPPN GQSPIALASG QSEYGFAEKV VEGMFIIVNS ITIKIHSKAF ENSTTRP00000007416/1-1443 XXXXXPRSPN GQSPIALASG QSEYGFAEKV VEGMFIVVNS ITIKIHSKAF bmy_10962T0/1-1404 ---------- ---------- ---------- --GMFIIVSS ITIKIHSKAF BACU018063/1-1348 KTCEEPRPPN GQSPIALASG QSEYGFAEKV VEGMFIIVSS ITIKIHSKAF 201 250 ENSBTAP00000012210/1-1431 HASFELWQLQ GYSVNPNWQQ SDLRFTRITD PHRGEVLTFK EITWQTLRIE ENSP00000192788/1-1440 HASFELWQLQ GYSVNPNWQQ SDLRLTRITD PCRGEVLTFK EITWQTLRIE ENSTTRP00000007416/1-1443 HASFELWQLQ GYSVNPNWQQ SDLRLTRITD PRRGEVLTFK EITWQTLRIE bmy_10962T0/1-1404 HASFELWQLQ GYSVNPNWQQ SDLRLTRITD PRRGEVLTFK EITWQTLRIE BACU018063/1-1348 HASFELWQLQ GYSVNPNWQQ SDLRLTRITD PRRGEVLTFK EITWQTLRIE 251 300 ENSBTAP00000012210/1-1431 ADATDNGDQD PVSTPLRLIT NQGRIQIALK RRTKDCNVIA SKLMFLLDDL ENSP00000192788/1-1440 ADATDNGDQD PVTTPLRLIT NQGRIQIALK RRTKDCNVIS SKLMFLLDDL ENSTTRP00000007416/1-1443 ADATDNGDQD PVTTPLRLIT NQGRIQIALK RRTKDCNVIA SKLMFLLDDL bmy_10962T0/1-1404 ADATDNGDQD PVTTPLRLIT NQGRIQIALK RRTKDCNVIA SKLMFLLDDL BACU018063/1-1348 ADATDNGDQD PVTTPLRLIT NQGRIQIALK RRTKDCNVIA SKLMFLLDDL 301 350 ENSBTAP00000012210/1-1431 LWVLTDSQLK AMMKYAESLS EAMEKAAQQR KTLAPEPIQI TPPAPSAQQS ENSP00000192788/1-1440 LWVLTDSQLK AMMKYAESLS EAMEKSAHQR KSLAPEPVQI TPPAPSAQQS ENSTTRP00000007416/1-1443 LWVLTDSQLK AMMKYAESLS EAMEKSAQQR KSLAPEPVQI TPPAPSAQQS bmy_10962T0/1-1404 LWVLTDSQLK AMMKYAESLS EAMEKSAQQR KSLAPEPVQI TPPAPSAQQS BACU018063/1-1348 LWVLTDSQLK AMMKYAESLS EAMEKSAQQR KSLAPEPVQI TPPAPSAQQS 351 400 ENSBTAP00000012210/1-1431 WAQAFGGSQG S--SSSSRLG QYFEKFDVKE SSYHLLISRL DLHVVCDDSQ ENSP00000192788/1-1440 WAQAFGGSQG NSNSSSSRLS QYFEKFDVKE SSYHLLISRL DLH-ICDDSQ ENSTTRP00000007416/1-1443 WAQAFGGSQG SSNSSSSRLS QYFEKFDVKE SSYHLLISRL DLH-ICDDSQ bmy_10962T0/1-1404 WAQAFGGSQG SSNSSSSRLS QYFEKFDVKE SSYHLLISRL DLH-ICDDSQ BACU018063/1-1348 WAQAFGGSQG SSNSSSSRLS QYFEKFDVKE SSYHLLISRL DLH-ICDDSQ 401 450 ENSBTAP00000012210/1-1431 SREPGVSANR LMGGAMQLTF RKMAFDYYPF HWAGDSCKHW VRHCEAMETR ENSP00000192788/1-1440 SREPGVSANR LMGGAMQLTF RKMAFDYYPF HWAGDSCKHW VRHCEAMETR ENSTTRP00000007416/1-1443 SREPGVSANR LMGGAMQLTF RKMAFDYYPF HWAGDSCKHW VRHCEAMDTR bmy_10962T0/1-1404 SREPGVSANR LMGGAMQLTF RKMAFDYYPF HWAGDSCKHW VRHCEAMETR BACU018063/1-1348 SREPGVSANR LMGGAMQLTF RKMAFDYYPF HWAGDSCKHW VRHCEAMETR 451 500 ENSBTAP00000012210/1-1431 GQWAQRLVTE FQSKMEKWHQ ETDLKPPWHL GADSSFRRKA DSFSSPRKSP ENSP00000192788/1-1440 GQWAQKLVME FQSKMEKWHE ETGLKPPWHL GVDSLFRRKA DSLSSPRKNP ENSTTRP00000007416/1-1443 GQWAQKLVME FQSKMEKWHE ETGLKPPWHL GVDSPFRRKA DSLSSPQKNP bmy_10962T0/1-1404 GQWAQKLVME FQSKMEKWHE ETGLKQPWHL GVGSPFXRKA DSLSSPRKNP BACU018063/1-1348 GQWAQKLVME FQSKMEKWHE ETGLKQPWHL GVGSPFRRKA DSLSSSRKNP 501 550 ENSBTAP00000012210/1-1431 LERSPSQGRQ TVFRPPAWNR LRSSCLVIRV DDLDIHQVST AGQPSKKPST ENSP00000192788/1-1440 LERSPSQGRQ PAFQPPAWNR LRSSCMVVRV DDLDIHQVST AGQPSKKPST ENSTTRP00000007416/1-1443 LERSPSQGRQ AVFRPPAWNR LRSSCLVIRV DDLDVHQVST AGQPSKKPSA bmy_10962T0/1-1404 LERSPSQGRQ AVFRPPAWNR LRSSCLVIRV DDLDVHQVST AGQPSKKPST BACU018063/1-1348 LERSPSQGRQ AVFRPPAWNR LRSSCLVIRV DDLDVHQVST AGQPSKKPST 551 600 ENSBTAP00000012210/1-1431 LLSCSRNLHN LPTQVSAIHI EFTEYYFPDN QELPVPCPNL YIQVNGLTFT ENSP00000192788/1-1440 LLSCSRKLHN LPTQVSAIHI EFTEYYFPDN QELPVPCPNL YIQLNGLTFT ENSTTRP00000007416/1-1443 LLSCSRKLHN LPTQVSAIHI EFTEYYFPDN QELPVPCPNL YIQLNGLTFT bmy_10962T0/1-1404 LLSCSRKLHN LPTQVSAIHI EFTEYYFPDN QELPVPCPNL YIQLNGLTFA BACU018063/1-1348 LLSCSRKLHN LPTQVSAIHI EFTEYYFPDN QELPVPCPNL YIQLNGLTFT 601 650 ENSBTAP00000012210/1-1431 MDPASLLWGN LFCLDLYRSL EQFKAIYKLE GSSQKDEHLD IRLDAFWLKK ENSP00000192788/1-1440 MDPVSLLWGN LFCLDLYRSL EQFKAIYKLE DSSQKDEHLD IRLDAFWLK- ENSTTRP00000007416/1-1443 MDPVSLLWGN LFCLDLYRSL EQFKAIYKLE DSSQKDEHLD IRLDAFWLK- bmy_10962T0/1-1404 MDPVSLLWGN LFCLDLYRSL EQFKAIYKLE DSSQKDEHLD IRLDAFWLK- BACU018063/1-1348 MDPVSLLWGN LFCLDLYRSL EQFKAIYKLE DSSQKDEHLD IRLDAFWLK- 651 700 ENSBTAP00000012210/1-1431 VSFPLEKRER AVLHRPQSLV LCASGMTATN TRHAPYCSCP DLQSLFRGFA ENSP00000192788/1-1440 VSFPLEKRER AELHRPQALV FSASGMIATN TRHAPHCSCS DLQSLFRGFA ENSTTRP00000007416/1-1443 VSFPLEKRER AGLHRPQALV FSASGVTATN TRHAPHCSCP DLQSLFRGFA bmy_10962T0/1-1404 ---------- ---------- ---------- ---------- ---SLFRGFA BACU018063/1-1348 ---------- ---------- ---------- ---------- ---------- 701 750 ENSBTAP00000012210/1-1431 ATEFFHSSYV QFPKVPGGFS FLHMFFMDHA FQMDSCLPQS SVLPPQRLKA ENSP00000192788/1-1440 AAEFFHSNYD HFPKVPGGFS LLHMLFLHHA FQMDSCLPQP NTLPPQRPKA ENSTTRP00000007416/1-1443 AAEFFHSNYV QFPKVPGGFS LLHMLFLHHA FQVDSRFPQS SALPPQRLKA bmy_10962T0/1-1404 AAEFFHSNYV QFPKVPGGFS LLHMLFLHHA FQVDSRLPQS SALPPQRLKA BACU018063/1-1348 ---------- ---------- ---------- --VDSRPPQS SALPPQRLKA 751 800 ENSBTAP00000012210/1-1431 SQDLWSIHFT QISLDFEGTE NFKGHTLNFV AAFPLSIWAC LPLRWQQAQA ENSP00000192788/1-1440 SWDLWSVHFT QISLDFEGTE NFKGHTLNFV APFPLSIWAC LPLRWQQAQA ENSTTRP00000007416/1-1443 SQDLWSIHFT QISLDFEGTE NFKGHSLNFV APFPLSIWAC LPLRWQQAQA bmy_10962T0/1-1404 SQDLWSIHFT QISLDFEGTE NFKGHSLNFV APFPLSIWAC LPLRWQQAQA BACU018063/1-1348 SQDLWSIHFT QISLDFEGTE NFKGHSLNFV APFPLSIWAC LPLRWQQAQA 801 850 ENSBTAP00000012210/1-1431 RKLRMATEGR LKPSASFGSP VHSEALAPDT VSHQRSKTEH DLKSLSGLPE ENSP00000192788/1-1440 RKLLLASEGR LKPSASFGSP VQSEALAPDS MSHPRSKTEH DLKSLSGLTE ENSTTRP00000007416/1-1443 RKLLMATEGR LKASASFGSP VHSEALAPDT VSHQRSKTEH DLKSLSGLTE bmy_10962T0/1-1404 RKLLMATEGR LKASASFGSP VHSEALAPDT VSHQRSKTEQ DLKSLSGLTE BACU018063/1-1348 RKLLMATEGR LKASASFGSP VHSEALAPDT VSHQRSKTEH DLKSLSSLTE 851 900 ENSBTAP00000012210/1-1431 VMEIPKEGSG GVDSNGPLME LEDTAGVHML VHSPAHICLR LDHYQYLALL ENSP00000192788/1-1440 VMEILKEGSS GMDNKGPLTE LEDVADVHML VHSPAHVRVR LDHYQYLALL ENSTTRP00000007416/1-1443 VMEILKEGSS SVDNKGPLTE LEDAADVHVL IHSPEHVRVR LDHYQYLALL bmy_10962T0/1-1404 VMEILKEGSS SVDNKGPLTE LEDAADVHVL VHSPEHVRVR LDHYQYLALL BACU018063/1-1348 VMEILKEGSS SVDNKGPLTE LEDTADVHVL IHSPEHVRVR LDHYQYLALL 901 950 ENSBTAP00000012210/1-1431 RLKEVLQDLQ EQLTKDTEAM TGAPLQDQTA CIGVLFPSAE VVLLMHPPPG ENSP00000192788/1-1440 RLKEVLQRLQ EQLTKDTESM TGSPLQNQTA CIGVLFPSAE VALLMHPAPG ENSTTRP00000007416/1-1443 RLKEVLQGLQ EQLTKDTEAM TGSPLQDQTA CIGVLFPSAE VALLMHPVPG bmy_10962T0/1-1404 RLKEVLQGLQ EQLTKDTEAM TGSPLQDQTA CIGVLFPSAE VALLMHPVPG BACU018063/1-1348 RLKEVLQGLQ EQLSKDTEAM TGSPLQDQTA CIGVLFPSAE VALLMHPVPG 951 1000 ENSBTAP00000012210/1-1431 ADEADSEGSD TTSLIDSELS PSEDRELKSD ASSEQGPASP EKVLEDSGIE ENSP00000192788/1-1440 AVDADSAGSD STSLVDSELS PSEDRELKSD ASSDQGPASP EKVLEESSIE ENSTTRP00000007416/1-1443 AVEADSEGSD TTSLVDSELS PSEDRELKSD ASSEQGPASP RKVLEDTDVE bmy_10962T0/1-1404 AVEADSEGSD TTSLVDSELS PSEDRELKSD ASSEQGPASP RKVLEDSGVE BACU018063/1-1348 AVEADSEGSD TTSLVDSELS PSEDRELKSD ASSEQGPASP RKVLEDSGVE 1001 1050 ENSBTAP00000012210/1-1431 HLDASQDRPL PLHSNGEVQG AGSLAQQEAG KGHKAVDSLQ AKRPSRAQAS ENSP00000192788/1-1440 NQDVSQERP- --HSNGELQD SGPLAQQLAG KGHEAVESLQ AKKLSRTQAS ENSTTRP00000007416/1-1443 NLDASQDRPL PLHSNGEVQD SDSLAQQEAG KGHEAVDSLQ DKGLSSAQAP bmy_10962T0/1-1404 NLDASQDRPL PLHSNGEVQD SDSLAQQEAG KGHEAVDSLQ AKRLSSAQAP BACU018063/1-1348 NLDASQDRPL PLHSSGEAQD SDPLAQREAG KGHEALDSLQ AKRLSSAQAP 1051 1100 ENSBTAP00000012210/1-1431 DSPAALKPPG SRDSGLNGQG ELIPLKNKEG ELSSAIHMTK DATKEALHAT ENSP00000192788/1-1440 SSPAALKPPA GRETAVNGQG ELIPLKNIEG ELSSAIHMTK DATKEALHAT ENSTTRP00000007416/1-1443 SSPAELKPPG GKDTAVNGQG ELIPLKNIEG ELSSAIHMTK DATKEALHAT bmy_10962T0/1-1404 SSPAELKPPG DKDTAVNGQG ELIPLKNIEG ELSSAIHMTK DATKEALHAT BACU018063/1-1348 SSPAELKPPG DKDTAVNGQG ELIPLKNIEG ELSSAIHMTK DATKEALHAT 1101 1150 ENSBTAP00000012210/1-1431 MDFTKEAMSL TKDAFSLGRD RMTSTMHKML SLPPAKEPVA KVDEGAAAPV ENSP00000192788/1-1440 MDLTKEAVSL TKDAFSLGRD RMTSTMHKML SLPPAKEPMA KTDEGVAAPV ENSTTRP00000007416/1-1443 MDLTKEAMSL TKDAFSLGRD RMTSTMHKML SLPPAKEPMA KIDEGVAAPV bmy_10962T0/1-1404 MDLTKEAMSL TKDAFSLGRD RMTSTMHKML SLPPAKEPMA KIDEGVAAPV BACU018063/1-1348 MDLTKEAMSL TKDAFSLGRD RMTSTMHKML SLPPAKEPMA KTDEGVAAPV 1151 1200 ENSBTAP00000012210/1-1431 SGGAARLRFF SMKRTVSQQS FDGVSLDNSG PEDRISVDSD GSESFVMLLE ENSP00000192788/1-1440 SGGAARLRFF SMKRTVSQQS FDGVSLDSSG PEDRISVDSD GSDSFVMLLE ENSTTRP00000007416/1-1443 GGGAARLRFF SMKRTVSQQS FDGVSLDNSG PEDRISVDSD GSESFVMLLE bmy_10962T0/1-1404 SGGAARLRFF SMKRTVSQQS FDGVSLDNSG PEDRISVDSD GSESFVMLLE BACU018063/1-1348 SGGAARLRFF SMKRTVSQQS FDGVSLDNSG PEDRISVDSD GSESFVMLLE 1201 1250 ENSBTAP00000012210/1-1431 SESGPESLPP GSLPNAVDSA GVQENPVVDS YGQGSPEANS SVSPSGEDLS ENSP00000192788/1-1440 SESGPESVPP GSLSNVSDNA GVQGSPLVNN YGQGSPAANS SVSPSGEDLI ENSTTRP00000007416/1-1443 SESGRESLPP GSLPNVLDSA GVQGSPVADS YGQGSPEAKS SASPSGEDLH bmy_10962T0/1-1404 SESGPESLPP GSLPNVLDSA GVQGSPVADS YGQGSPEANS SASPSGEDLH BACU018063/1-1348 SESGPESLPP GSLPNVLDSA GVQGSPVADS YGQGSPEANS SASPSGEDLH 1251 1300 ENSBTAP00000012210/1-1431 LHLVSVLVLK VHEVSLGIEV RGEDLTVALQ AEKLTLQQPG TVGLWQFLHG ENSP00000192788/1-1440 FHPVSVLVLK VNEVSFGIEV RGEDLTVALQ AEELTLQQLG TVGLWQFLHG ENSTTRP00000007416/1-1443 LHLVSVLVMK VNEVSLGIEV RGEDLTVALQ AEELTLQQLG TVGLWQFLHG bmy_10962T0/1-1404 LHLVSVLVLK VNEVSLGIEV RGEDLTVALQ AEELTLQQLG TVGLWQFLHG BACU018063/1-1348 LHLVSVLVLK VNEVSLGIEV RGEDLTVALQ AEELTLQQLG TVGLWQFLHG 1301 1350 ENSBTAP00000012210/1-1431 QCPGTSFQDS STSKTGHIRP AVGLRFEVGP GAAVHSPLAT QNGFLHLLLQ ENSP00000192788/1-1440 QCPGTCFQES STLKTGHIRP AVGLRFEVGP GAAVHSPLAS QNGFLHLLLH ENSTTRP00000007416/1-1443 QCPGKSFQEA STLKTGHIRP AVGLRFEVGP GAAVHSPLAT QNGFLRFLLQ bmy_10962T0/1-1404 QC-------- ---------P AVGLRFEVGP GAAVHSPLAT QNGFLRFLLQ BACU018063/1-1348 QCPGTSFQEA STLKTGHIRP AVGLRFEVGP GAAVHSPLAT QNGFLRFLLQ 1351 1400 ENSBTAP00000012210/1-1431 GCDLELLTSV LSGLGPFLED EEIPVVVPMQ IELLNSRVTL KDDVPPIYPT ENSP00000192788/1-1440 GCDLELLTSV LSGLGPFLED EEIPVVVPMQ IELLNSSITL KDDIPPIYPT ENSTTRP00000007416/1-1443 GCDLELLTSV LSGLGPFLED EEIPLVVPMQ IELLNSRITL KDDIPPIYPT bmy_10962T0/1-1404 GCDLELLTSV LSGLGPFLED EEIPLVVPMQ IELLNSRITL KDDIPPIYPT BACU018063/1-1348 GCDLELLTSV LSGLGPFLED EEIPLVVPMQ IELLNSRITL KDDIPPIYPT 1401 1450 ENSBTAP00000012210/1-1431 SPGPIPITLS VEHTVLSRSD DGVFHIGAAA QDRPSAKAPK SEKRQPPKEQ ENSP00000192788/1-1440 SPGPIPITLA MEHVVLKRSD DGVFHIGAAA QDKPSAEVLK SEKRQPPKEQ ENSTTRP00000007416/1-1443 SPGPIPITLA VEHVVLKRSD DGVFHIGAAA QDRPSAEVLK SEKRQPPKEQ bmy_10962T0/1-1404 SPGPIPITLA MEHVVLKRSD DGVFHIGAAA QDRPSAEVLK SEKRQPPKEQ BACU018063/1-1348 SPGPIPITLA MEHVVLKRSD DGVFHIGAAA QDRPSAEVLK SEKRQPPKEQ 1451 1500 ENSBTAP00000012210/1-1431 VFLVSTGEAF GPQVNELPTL RKELIETKQA LAQANQDKEK LLEEIRKYRS ENSP00000192788/1-1440 VFLVPTGEVF EQQVKELPIL QKELIETKQA LANANQDKEK LLQEIRKYNP ENSTTRP00000007416/1-1443 VFPVPTGEAF GPQVQELPTL QKELIETKQA LAHANQDKEK LLREIRKYNP bmy_10962T0/1-1404 VFLVPTGEAF GPQVQELPAL QKELIETKQA LAHANQDKEK LLQEIRKYNP BACU018063/1-1348 VFLVPTGEAF GPQVQELPTL QKELIETKQA LAHANQDKEK LLQEIRKYNP 1501 1550 ENSBTAP00000012210/1-1431 FHHL ENSP00000192788/1-1440 FFEL ENSTTRP00000007416/1-1443 LFEL bmy_10962T0/1-1404 LFEL BACU018063/1-1348 LFDL