KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:46:01 2014 Check: 00 .. Name: ENSP00000286523/1-1045 Len: 1112 Check: 9023 Weight: 1.00 Name: ENSBTAP00000012216/1-1043 Len: 1112 Check: 6339 Weight: 1.00 Name: bmy_03565T0/1-1100 Len: 1112 Check: 8323 Weight: 1.00 Name: ENSTTRP00000003271/1-1040 Len: 1112 Check: 5016 Weight: 1.00 // 1 50 ENSP00000286523/1-1045 MNLQAQPKAQ NKRKRCLFGG QEPAPKEQPP PLQPPQQS-- ---IRVKEEQ ENSBTAP00000012216/1-1043 MNLQAQPKAQ NKRKRCLFGD QEPAPKEQPQ PLQAPQQPPA PPQSRVKEEP bmy_03565T0/1-1100 MNLQAQPKAQ NKRKRCLFGD QEPAPKEQLQ PLQAPQQPPA PPPSRVKEET ENSTTRP00000003271/1-1040 MNLQAQPKAQ NKRKRCLFGD QEPAPKEQLQ PLQAPQQPPA PPPSRVKEEP 51 100 ENSP00000286523/1-1045 YLGHEGPGGA VSTSQPVELP PPSSLALLNS VVYGPERTSA AMLSQQVASV ENSBTAP00000012216/1-1043 YFAHEGSAGA APHSQPVELP SSNSLALLNS VVYGSERT-- -MLSQQVGSV bmy_03565T0/1-1100 YFAHEGPAGA APASQPVELP PSNSLALLNS VVYGSERT-- -MLSQQVGSV ENSTTRP00000003271/1-1040 YFAHEGPAGA APASQPVELP PSNSLALLNS VVYGSERT-- -MLSQQVGSV 101 150 ENSP00000286523/1-1045 KWPNSVMAPG RGPERGGGGG VSDSSWQQQP GQPPPHSTWN CHSLSLYSAT ENSBTAP00000012216/1-1043 KWPNSVMAPG RGPERGGGGG VSDSGWQQQP GQPPPNSTWN RHSLPLYSGP bmy_03565T0/1-1100 KWPNSVMAPG RGPERGGVGG VSDSGWQQQP GQPPPHSTWN RHSLPLYSGP ENSTTRP00000003271/1-1040 KWPNSVMAPG RGPERGGVGG VSDSGWQQQP GQPPPHSTWN RHSLPLYSGP 151 200 ENSP00000286523/1-1045 KGSPHPGVGV PTYYNHPEAL KREKAGGPQL DRY---VRPM MPQKVQLEVG ENSBTAP00000012216/1-1043 KGSSHPGMGV ATYYNHPEPL KLEKVGGPQL DRYGNAVRPM VPPKVQLEVG bmy_03565T0/1-1100 KGSPHPGMGV STYYNHPEPL KREKAGGPQL DRFGNAVRPM VPQKVQLEVG ENSTTRP00000003271/1-1040 KGSPHPGMGV STYYNHPEPL KREKAGGPQL DRFGNAVRPM VPQKVQLEVG 201 250 ENSP00000286523/1-1045 RPQAPLNSFH AAKKPPNQSL PLQPFQLAFG HQVNRQVFRQ GPPPPNPVAA ENSBTAP00000012216/1-1043 RSQAPLNSFH MAKKPPNQTL PLESFRQAFG HQVNRQVFRQ GPPPPNPVTA bmy_03565T0/1-1100 RPQAPLNSFH VAKKPPNQTL PLQPFQLAFG HQVNRQVFRQ GPSPPNPVAA ENSTTRP00000003271/1-1040 RPQAPLNSFH VAKKPPNQTL PLQPFQLAFG HQVNRQVFRQ GPSPPNPVAA 251 300 ENSP00000286523/1-1045 FPPQKQQQQQ QPQQQQQQQQ AALPQMPLFE NFYSMPQ-QP SQQPQDFGLQ ENSBTAP00000012216/1-1043 FPPQKQ---- --QQQQQQQQ AALPQIQLLE NFYSMQQPPP SQQPQDFGLQ bmy_03565T0/1-1100 FPPQK----- ---QQQQQQQ AALPQMQLFE NFYPMQQ-PP SQQPQDFGLQ ENSTTRP00000003271/1-1040 FPPQK----- ----QQQQQQ AALPQMQLFE NFYPMQQ-PP SQQPQDFGLQ 301 350 ENSP00000286523/1-1045 PAGPLGQSHL AHHSMAPYPF PPNPDMNPEL RKALLQDSAP QPALPQVQIP ENSBTAP00000012216/1-1043 PAGPLGQSHL AHHSMAPYHF PPNPDMNPEL RKALLQESAP QPVLPQAQIA bmy_03565T0/1-1100 PAGPLSQSHL AHHSLAPYPF PPNPDMNPEL RKALLQESAP QPVLPQAQIA ENSTTRP00000003271/1-1040 PAGPLSQSHL AHHSLAPYPF PPNPDMNPEL RKALLQESAP QPVLPQAQIA 351 400 ENSP00000286523/1-1045 FPRRSRRLSK EGILPPSALD GAGTQPGQEA TGNLFLHHWP LQQPPPGSLG ENSBTAP00000012216/1-1043 FPRRSRRLSK EGVLPSTALD GAGTQPGQEP ASNLFLHHWV PQQPPPGPLG bmy_03565T0/1-1100 FPRRSRRLSK EGVLPSTTLD GAGTQPGQDP ASNLFLHHWP LQQPPPGPMG ENSTTRP00000003271/1-1040 FPRRSRRLSK EGVLPSTTLD GAGTQPGQDP ASNLFLHHWP LQQPPPGPLG 401 450 ENSP00000286523/1-1045 QPHPEALGFP LELRESQLLP DGERLAPNGR EREAPAMGSE EGMRAVSTGD ENSBTAP00000012216/1-1043 QPHPEALGFT LELRESQFLS DGERLAPNGR ERETPAMGGE EGMRAVGTGD bmy_03565T0/1-1100 QPHPEALGFS LELRESQLLS DGERLAPNGR EREAPAMGSE EGTRAVGTGD ENSTTRP00000003271/1-1040 QPHPEALGFP LELRESQLLS DGERLAPNGR EREAPAMGSE EGTRAVGTGD 451 500 ENSP00000286523/1-1045 CGQVLRGGVI QSTRRRRRAS QEANLLTLAQ KAVELASLQN AKDGSGSEEK ENSBTAP00000012216/1-1043 CGQVLRGGVI QSTRRRRRAS QEANLLTLAQ KAVELASLQN TKDASGSEEK bmy_03565T0/1-1100 CGQVLRGGVI QSTRRRRRAS QEANLLTLAQ KAVELASLQS TKDASGSEEK ENSTTRP00000003271/1-1040 CGQVLRGGVI QSTRRRRRAS QEANLLTLAQ KAVELASLQN TKDASGSEEK 501 550 ENSP00000286523/1-1045 RKSVLASTTK CGVEFSEPSL ATKRAREDSG MVPLIIPVSV PVRTVDPTEA ENSBTAP00000012216/1-1043 RKSVLASTTK CGVEFSEPAL A-KRAREDSG MVPLIIPVSV PVRAVDPTEA bmy_03565T0/1-1100 RKSVLASTTK CGVEFSEPSL AAKRAREDSG MVPLIIPVSV PVRAVDPTEA ENSTTRP00000003271/1-1040 RKSVLASTTK CGVEFSEPSL AAKRAREDSG MVPLIIPVSV PVRAVDPTEA 551 600 ENSP00000286523/1-1045 AQAGGLDEDG KGPEQNPAEH KPSVIVTRRR STRIPGTDAQ AQAEDMNVKL ENSBTAP00000012216/1-1043 AQAGGVDEDG KGPEQHPAEH KPSVIVTRRR STRIPGTDAP AQPEDMNVKL bmy_03565T0/1-1100 AQAGGVDEDG KCPEQNPTEH KPSVIVTRRR STRIPGTDAP AQAEDMNVKL ENSTTRP00000003271/1-1040 AQAGGVDEDG KGPEQNPTEH KPSVIVTRRR STRIPGTDAP AQAEDMNAKL 601 650 ENSP00000286523/1-1045 EGEPSVRKPK QRPRPEPLII PTKAGTFIAP PVYSNITPYQ SHLRSPVRLA ENSBTAP00000012216/1-1043 EGEPSVRKPK QRPRPEPLII PTKAGTFIAP PVYSNITPYQ SHLRSPVRLA bmy_03565T0/1-1100 EGEPSVRKPK QRPRPEPLII PTKAGTFIAP PVYSNITPYQ SHLRSPVRLA ENSTTRP00000003271/1-1040 EGEPSVRKPK QRPRPEPLII PTKAGTFIAP PVYSNITPYQ SHLRSPVRLA 651 700 ENSP00000286523/1-1045 DHPSERSFEL PPYTPPPILS PVREGSGLYF NAIISTSTIP APPPITPKSA ENSBTAP00000012216/1-1043 DHPSERSFEL PPYTPPPILS PVREGSGLYF NAIMSTSSIP APPPITPKSA bmy_03565T0/1-1100 DHPSERSFEL PPYTPPPILS PVREGSGLYF NAIMSTSSIP APPPITPKSA ENSTTRP00000003271/1-1040 DHPSERSFEL PPYTPPPILS PVREGSGLYF NAIMSTSSIP APPPITPKSA 701 750 ENSP00000286523/1-1045 HRTLLRTNSA EVTPPVLSVM GEATPVSIEP RINVGSRFQA EIPLMRDRAL ENSBTAP00000012216/1-1043 HRTLLRSNSA EVTPPVLSVM GEATPVSIEP RINVGSRFQA EIPSMRDRAL bmy_03565T0/1-1100 HRTLLRSNSA EVTPPVLSVM GEATPVSIEP RINVGSRFQA EIPSMRDRAL ENSTTRP00000003271/1-1040 HRTLLRSNSA EVTPPVLSVM GEATPVSIEP RINVGSRFQA EIPSMRDRAL 751 800 ENSP00000286523/1-1045 AAADPHKADL VWQPWEDLES SREKQRQVED LLTAACSSIF PGAGTNQELA ENSBTAP00000012216/1-1043 AAADPHKADL VWQPWEVLES SREKQRQVED LLTAACSSIF PGAGTNQELA bmy_03565T0/1-1100 AAADSHKADL VWQPWEDLES SREKQRQVED LLTAACSSIF PGAGTNQELA ENSTTRP00000003271/1-1040 AAADSHKADL VWQPWEDLES SQEKQRQVED LLTAACSSIF PGAGTNQELA 801 850 ENSP00000286523/1-1045 LHCLHESRGD ILETLNKLLL KKPLRPHNHP LATYHYTGSD QWKMAERKLF ENSBTAP00000012216/1-1043 LHCLHESRGD ILETLNKLLL KKPLRPHNHP LATYHYTGSD QWKMAERKLF bmy_03565T0/1-1100 LHCLHESRGD ILETLSKLLL KKPLRLHNHP LATYHYTGSD QWKMAERKLF ENSTTRP00000003271/1-1040 LHCLHESRGD ILETLNKLLL KKPLRLHNHP LATYHYTGSD QWKMAERKLF 851 900 ENSP00000286523/1-1045 NKGIAIYKKD FFLVQKLIQT KTVAQCVEFY YTYKKQVKIG RNGTLTFGDV ENSBTAP00000012216/1-1043 NKGIAIYKKD FFLVQKLIQT KTVAQCVEFY YTYKKQVKIG RNGTLTFGDV bmy_03565T0/1-1100 NKGIAIYKKD FFLVQKLIQT KTVAQCVEFY YTYKKQVKIG RNGTLTFGDV ENSTTRP00000003271/1-1040 NKGIAIYKKD FFLVQKLIQT KTVAQCVEFY YTYKKQVKIG RNGTLTFGDV 901 950 ENSP00000286523/1-1045 DTSDEKSAQE EVEVDIKTSQ KFPRVPLPRR ESPSEERLEP KREVKEPRKE ENSBTAP00000012216/1-1043 DTSDEKSAQE EVEVDIKTSQ KFPRVPPPRR ESPNEERLEP KKEEKETRKE bmy_03565T0/1-1100 DTSDEKSAQE EVEVDIKTSQ KFPRVPPPRR ESPSEERLEP KKEVKETRKE ENSTTRP00000003271/1-1040 DTSDEKSAQE EVEVDIKTSQ KFPRVPPPRR ESPSEERLEP KKEVKEARKE 951 1000 ENSP00000286523/1-1045 GEEEVPEIQE KEEQEEGRER SRRAAAVKAT QTLQANESAS DILILRSHES ENSBTAP00000012216/1-1043 GEEEMPETQD KGEQEEGRER SRRAAAVKAT QTLQANESAN DILILRSHES bmy_03565T0/1-1100 EEEEMPETQE KGEQEEGRER SRRAAAVKAT QTLQANESAN DILILRSHES ENSTTRP00000003271/1-1040 -EEEMPETQE KAEQEEGRER SRRAAAVKAT QTLQANESAN DILILRSHES 1001 1050 ENSP00000286523/1-1045 NAPGSAGGQA SEKPREGTGK SRRALPFSEK KKKTETFSKT QNQENTFPCK ENSBTAP00000012216/1-1043 NAPGSAGGQA SEKPREGPGK SRRALPFSEK KKKTETFNKT QNQENTFPCK bmy_03565T0/1-1100 NAPGSAGGQA SEKPREGPGK SRRALPFSEK KKKPEPFNKS QNQENTFPCK ENSTTRP00000003271/1-1040 NAPGSAGGQA SEKPREGPGK SRRALPFSEK KKKPEPFNKS QNQENTFPCK 1051 1100 ENSP00000286523/1-1045 KCGR------ ---------- ---------- ---------- ---------- ENSBTAP00000012216/1-1043 KCG------- ---------- ---------- ---------- ---------- bmy_03565T0/1-1100 KCGRVFYKVK SRSAHMKSHA EQEKKAAALR QKEKEAAAAA ATAAASPHQP ENSTTRP00000003271/1-1040 KCGR------ ---------- ---------- ---------- ---------- 1101 1150 ENSP00000286523/1-1045 ---------- -- ENSBTAP00000012216/1-1043 ---------- -- bmy_03565T0/1-1100 ALREESSAGE RG ENSTTRP00000003271/1-1040 ---------- --