KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:46:02 2014 Check: 00 .. Name: bmy_05285T0/1-560 Len: 666 Check: 7288 Weight: 1.00 Name: BACU008475/1-597 Len: 666 Check: 3311 Weight: 1.00 Name: ENSP00000322304/1-461 Len: 666 Check: 5572 Weight: 1.00 Name: ENSBTAP00000012232/1-450 Len: 666 Check: 8321 Weight: 1.00 Name: ENSTTRP00000008588/1-313 Len: 666 Check: 8271 Weight: 1.00 // 1 50 bmy_05285T0/1-560 MPRVVPDQRS KFENEEFFRK LSRECEIKYT GFRDRPHEER QARFQNACRD BACU008475/1-597 MRSVQSDLGA P--------- ---------E GPRVRDSVPG GPGEPGAMER ENSP00000322304/1-461 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012232/1-450 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008588/1-313 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_05285T0/1-560 GRSEIAFVAT GTNLSLQFFP ASWQGEQRQT PSREYVDLER EAGKVYLKAP BACU008475/1-597 PKRALEGTGA AACRSIHLSI HPWGSTMATF SRQEFFQ--- ---------- ENSP00000322304/1-461 ---------- ---------- ------MATF SRQEFFQ--- ---------- ENSBTAP00000012232/1-450 ---------- ---------- ------MATF SRQEFFQ--- ---------- ENSTTRP00000008588/1-313 ---------- ---------- ------MATF SRQEFFQ--- ---------- 101 150 bmy_05285T0/1-560 MILNGVCVIW KGWIDLQRLD GMGCLEFDEE RAQQGLDQIW LLLAICLACR BACU008475/1-597 QLLQG-CLL- ---------- ---------P TAQQGLDQIW LLLAICLVCR ENSP00000322304/1-461 QLLQG-CLL- ---------- ---------P TAQQGLDQIW LLLAICLACR ENSBTAP00000012232/1-450 QLLQG-CLL- ---------- ---------P TAQQGLDQIW LLLAICLACR ENSTTRP00000008588/1-313 QLLQG-CL-- ---------- ---------- TAQQGLDQIW LLLAICLACR 151 200 bmy_05285T0/1-560 LLGRLGLPSY LKHASTVAGG FFSLYHFFQL HMVWVMLLCL LCYLVLFLCR BACU008475/1-597 LLWRLGLPSY LKHASTVAGG VFSLYHFFQL HMVWVVLLSL LCYLVLFLCR ENSP00000322304/1-461 LLWRLGLPSY LKHASTVAGG FFSLYHFFQL HMVWVVLLSL LCYLVLFLCR ENSBTAP00000012232/1-450 LLWRLGLPSY LKHASTVAGG FFSLYHFFQL HMVWVVLLSL LCYLVLFLCR ENSTTRP00000008588/1-313 LLWRLGLPSY LKHASTVAGG FFSLYHFFQL HMVWVVLLSL LCYLVLFLCR 201 250 bmy_05285T0/1-560 HSSHRGIFLS ITILIYLLMG EMHVVDTVTW HKMRGAQMIV AMKAVSLGFD BACU008475/1-597 HSSHRGVFLS VTILIYLLMG -------YGW -----AQMIV AMKAVSLGFD ENSP00000322304/1-461 HSSHRGVFLS VTILIYLLMG EMHMVDTVTW HKMRGAQMIV AMKAVSLGFD ENSBTAP00000012232/1-450 HSSHRGVFLS VTILIYLLMG EMHMVDTVTW HKMRGAQMIV AMKAVSLGFD ENSTTRP00000008588/1-313 HSSHRGVFLS VTILIYLLMG EMHMVDTVTW HKMRGAQMIV AMKAVSLGFD 251 300 bmy_05285T0/1-560 LDRGEVGVVP SPVEFMGYLF FVGTIVFGPW ISFHSYLQAI QGLPLSRQWL BACU008475/1-597 LDRGEVGAVP SPVEFMGYLY FVGTIVFGPW ISFHSYLQAV QGRPLSRRWL ENSP00000322304/1-461 LDRGEVGTVP SPVEFMGYLY FVGTIVFGPW ISFHSYLQAV QGRPLSCRWL ENSBTAP00000012232/1-450 LDRGEVGAVP SPVEFMGYLY FVGTIVFGPW ISFHSYLQAV QGHPLSRRWL ENSTTRP00000008588/1-313 LDRGEVGAVP SPVEFMGYLY FVGTIVFGPW ISFHSYLQAV QGRPLSRRWL 301 350 bmy_05285T0/1-560 QKVAQSLVLA LLCLVLSTCV GPYLFPYFIP LDGDHLLH-- ---------K BACU008475/1-597 QKVARSLALA LLCLVLSTCV GPYLFPYFIP LDGDRLLRNK KRKA-----R ENSP00000322304/1-461 QKVARSLALA LLCLVLSTCV GPYLFPYFIP LNGDRLLRNK KRKARGTMVR ENSBTAP00000012232/1-450 QKVARSLALA LLCLVLSTCV GPYLFPYFIP LDGDRLLR-- ---------K ENSTTRP00000008588/1-313 QKVARSLALA LLCLVLSTCV GPYLFPYFIP LDGDRLLRNK KRKARGTMVR 351 400 bmy_05285T0/1-560 WLRAYESAVS FHFSNYFVGF LSEATATLAG AGFTEEKDHL EWDLTVSKPL BACU008475/1-597 WLRAYESAVS FHFSNYFVGF LSEATATLAG AGFTEEKDHL EWDLTVSKPL ENSP00000322304/1-461 WLRAYESAVS FHFSNYFVGF LSEATATLAG AGFTEEKDHL EWDLTVSKPL ENSBTAP00000012232/1-450 WLRAYESAVS FHFSNYFVGF LSEATATLAG AGFTEEKDHL EWDLTVSKPL ENSTTRP00000008588/1-313 WLRAYESAVS FHFSNYFVGF LSEATATLAG AGFTEEKDHL EWDLTVSKPL 401 450 bmy_05285T0/1-560 NVELPRSMVE VVTSWNLPMS CWLNNYVFKN ALHLGTFSAV LVTYATSALL BACU008475/1-597 NVELPRSMVE VVTSWNLPMS YWLNNYVFKN ALRLGTFSAV LVTYAASALL ENSP00000322304/1-461 NVELPRSMVE VVTSWNLPMS YWLNNYVFKN ALRLGTFSAV LVTYAASALL ENSBTAP00000012232/1-450 NVELPRSMVE VVTSWNLPMS YWLNNYVFKN ALHLGTFSAV LVTYAASALL ENSTTRP00000008588/1-313 NVELPRSMVE VVTSWNLPMS YWLNN----- ---------- ---------- 451 500 bmy_05285T0/1-560 HGFSFHLAAV LLSLAFITYV EHILRKRLAR ILSACVLSKR CPPDCSHQHR BACU008475/1-597 HGFSFHLAAV LLSLAFITYV EHVLRKRLAR ILSACILSKR CPPDCSHQHR ENSP00000322304/1-461 HGFSFHLAAV LLSLAFITYV EHVLRKRLAR ILSACVLSKR CPPDCSHQHR ENSBTAP00000012232/1-450 HGFSFHLAAV LLSLAFITYV EHVLRKRLAR ILSACVLSKR CPPDCSHQHR ENSTTRP00000008588/1-313 ---------- ---------- ---------- ---------- ---------- 501 550 bmy_05285T0/1-560 LGLGVRALNL LFGALAIFHL AYLGSLFDID VDDTTEEQGY SMAYTVHKWS BACU008475/1-597 LGLGVRALNL LFGALAIFHL AYLGSLFDVD VDDTTEEQGY GMAYTVHKWN ENSP00000322304/1-461 LGLGVRALNL LFGALAIFHL AYLGSLFDVD VDDTTEEQGY GMAYTVHKWS ENSBTAP00000012232/1-450 LGLGVRALNL FFGALAIFHL AYLGSLFDVD VDDTTEEQGY GMAYTVHKWS ENSTTRP00000008588/1-313 ---------- ---------- ---------- ---------- ---------- 551 600 bmy_05285T0/1-560 ELS------- ----WA--SH WVTFG----- ---------- ---------- BACU008475/1-597 DTFMICMETV TACLWGPLSL WVVIAFLRQQ PLRFVLQLVV SVGQIYGDVL ENSP00000322304/1-461 ELS------- ----WA--SH WVTFG----- ---------- ---------- ENSBTAP00000012232/1-450 ELS------- ----WA--SH WVTFG----- ---------- ---------- ENSTTRP00000008588/1-313 ---------- ---------- ---------- ---------- ---------- 601 650 bmy_05285T0/1-560 ---------- ---------- CWIFYHLIG- ---------- ---------- BACU008475/1-597 YFLTEHREGF QHGELGHPLY FWFYFVFLNA LWLVLPGILV LDSIKQLARA ENSP00000322304/1-461 ---------- ---------- CWIFYRLIG- ---------- ---------- ENSBTAP00000012232/1-450 ---------- ---------- CWIFYRLIG- ---------- ---------- ENSTTRP00000008588/1-313 ---------- ---------- ---------- ---------- ---------- 651 700 bmy_05285T0/1-560 ---------- ------ BACU008475/1-597 QSTLDAKATK AKGKQN ENSP00000322304/1-461 ---------- ------ ENSBTAP00000012232/1-450 ---------- ------ ENSTTRP00000008588/1-313 ---------- ------