KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:46:03 2014 Check: 00 .. Name: ENSP00000365962/1-688 Len: 777 Check: 9809 Weight: 1.00 Name: ENSBTAP00000012236/1-737 Len: 777 Check: 2870 Weight: 1.00 Name: ENSTTRP00000008138/1-685 Len: 777 Check: 5885 Weight: 1.00 Name: bmy_21808T0/1-707 Len: 777 Check: 4078 Weight: 1.00 Name: BACU008476/1-663 Len: 777 Check: 3938 Weight: 1.00 // 1 50 ENSP00000365962/1-688 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012236/1-737 PPCAKRGVGR VAWRPLRLRQ GTRWGRGRPH SGVRTRVATV SCHPEVGGSR ENSTTRP00000008138/1-685 ---------- ---------- ---------- ---------- ---------- bmy_21808T0/1-707 ---------- ---------- ---------- ---------- ---------- BACU008476/1-663 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000365962/1-688 MATASGASDL SGSGAPPPGV GAQAAAAAEE EEREVVRVRV KKCESFLPPE ENSBTAP00000012236/1-737 MATASGSSDL AGSGAPSPGG GAQ-AAAAEE EEREVVRVRV KKCESFLPLE ENSTTRP00000008138/1-685 MATASGSSDL AGSGAPPPGG GAQ--AAAEE EEREVVRVRV KKCESFLPPE bmy_21808T0/1-707 MATASGSSDL AGSGAPPPGG GAQ--AAAEE EEREVVRVRV K--------- BACU008476/1-663 MATASGSSDL AGSGAPPPGG GAQ--AAAEE EEREVVRVRV KKCESFLPPE 101 150 ENSP00000365962/1-688 FRSFAVDPQI TSLDVLQHIL IRAFDLSGKK NFGISYLGRD RLGQEVYLSL ENSBTAP00000012236/1-737 FRSFAVDPQI TSLDVLQHIL IRAFDLNGKK NFGISYLGRD RMGQEAYLSL ENSTTRP00000008138/1-685 FRSFAVDPQI TSLDVLQHIL IRAFDLNGKK NFGISYLGRD RLGQEAYLSL bmy_21808T0/1-707 ---------I TSLDVLQHIL IRAFDLNGKK NFGISYLGRD RLGQEAYLSL BACU008476/1-663 FRSFAVDPQI TSLDVLQHIL IRAFDLNGKK NFGISYLGRD RLGQEASLSL 151 200 ENSP00000365962/1-688 LSDWDLSTAF ATASKPYLQL RVDIRPSED- ---------- ---------- ENSBTAP00000012236/1-737 LSDWDLSTAF ATASKPYLHL RVDIRPTED- ---------- ---------- ENSTTRP00000008138/1-685 LSDWDLSTAF ATASKPYLQL RVDIRPTED- ---------- ---------- bmy_21808T0/1-707 LSDWDLSTAF ATASKPYLQL RVDIRPTEDR RVEWLIALWV AWLWRERNPA BACU008476/1-663 LSDWDLSTAF ATASKPYLQL RVDIRPTED- ---------- ---------- 201 250 ENSP00000365962/1-688 ---------- --------SP LLEDWDIISP KDVIGSDVLL AEKRSSLTTA ENSBTAP00000012236/1-737 ---------- --------SP LLEDWDIISP KDVIGSDVLL AEKRSSLTTA ENSTTRP00000008138/1-685 ---------- --------SP LLEDWDIISP KDVIGSDMLL AEKRSSLTTA bmy_21808T0/1-707 LRSGVLIRIL IRRHSVCPGP LLEDWDIISP KDVIGSDVLL AEKRSSLTTA BACU008476/1-663 ---------- --------SP LLEDWDIISP KDVIGSDVLL AEKRSSLTTA 251 300 ENSP00000365962/1-688 ALPFTQSILT QVGRTLSKVQ QVLSWSYGED VKPFKPPLSD AEFHTYLNHE ENSBTAP00000012236/1-737 ALPFTQSIIS QVGRTLSKVQ QVLSWSYGED VKPFKPPLSD AEFHTYLNHE ENSTTRP00000008138/1-685 ALPFTQSILS QVGRTLSKVQ QVLSWSYGED VKPFKPPLSD AEFHTYLNHE bmy_21808T0/1-707 ALPFTQSILS QVGRTLSKVQ QVLSWSYGED VKPFKPPLSD AEFHTYLNHE BACU008476/1-663 ALPFTQSILS QVGRTLSKVQ QVLSWSYGED VKPFKPPLSD AEFHTYLNHE 301 350 ENSP00000365962/1-688 GQLSRPEELR LRIYHGGVEP SLRKVVWRYL LNVYPDGLTG RERMDYMKRK ENSBTAP00000012236/1-737 GQLSRPEELR LRIYHGGVEP SLRKVVWRYL LNVYPDGLTG RERMDYMKRK ENSTTRP00000008138/1-685 GQLSRPEELR LRIYHGGVEP SLRKVVWRYL LNVYPDGLTG RERMDYMKRK bmy_21808T0/1-707 GQLSRPEELR LRIYHGGVEP SLRKVVWRYL LNVYPDGLTG RERMDYMKRK BACU008476/1-663 GQLSRPEELR LRIYHGGVEP SLRKVVWRYL LNVYPDGLTG RERMDYMKRK 351 400 ENSP00000365962/1-688 SREYEQLKSE WAQRANPEDL EFIRSTVLKD VLRTDRAHPY YAGPEDGPHL ENSBTAP00000012236/1-737 SREYEQLKSE WAQRASPEDL EFIRSTVLKD VLRTDRAHPY YAGPEDGPHL ENSTTRP00000008138/1-685 SREYEQLKSE WAQRASPEDL EFIRSTVLKD VLRTDRAHPY FAGPEDGPHL bmy_21808T0/1-707 SREYEQLKSE WAQRASPEDL EFIRSTVLKD VLRTDRAHPY FAGPEDGPHL BACU008476/1-663 SREYEQLKSE WAQRASPEDL EFIRSTVLKD VLRTDRAHPY FAGPEDGPHL 401 450 ENSP00000365962/1-688 RALHDLLTTY AVTHPQVSYC QGMSDLASPI LAVMDHEGHA FVCFCGIMKR ENSBTAP00000012236/1-737 RALHDLLTTY AVTHPQVSYC QGMSDLASPI LAVMDHEGHA FVCFCGIMKR ENSTTRP00000008138/1-685 RALHDLLTTY AVTHPQVSYC QGMSDLASPI LAVMDHEGHA FVCFCGIMKR bmy_21808T0/1-707 RALHDLLTTY AVTHPQVSYC QGMSDLASPI LAVMDHEGHA FVCFCGIMKR BACU008476/1-663 RALHDLLTTY AVTPPQVSYC QGMSDLASPI LAVMDHEGHA FVCFCGIMKR 451 500 ENSP00000365962/1-688 LAANFHPDGR AMATKFAHLK LLLRHADPDF YQYLQEAGAD DLFFCYRWLL ENSBTAP00000012236/1-737 LAANFHPDGR AMATKFAHLK LLLRHADPDF YQYLQEAGAD DLFFCYRWLL ENSTTRP00000008138/1-685 LAANFHPDGR AMATKFAHLK LLLRHADPDF YQYLQEAGAD DLFFCYRWLL bmy_21808T0/1-707 LAANFHPDGR AMATKFAHLK LLLRHADPDF YQYLQEAGAD DLFFCYRWLL BACU008476/1-663 LAANFHPDGR AMATKFAHLK LLLRHADPDF YQYLQEAGAD DLFFCHRWLL 501 550 ENSP00000365962/1-688 LELKREFAFD DALRMLEVTW SSLPPDPPEH EVELVGPPSQ VADAGFGGHR ENSBTAP00000012236/1-737 LELKREFAFD DALRMLEVTW SSLPPDPPEH EVELVGPPSL VVDMGFGSHR ENSTTRP00000008138/1-685 LELKREFAFD DALRMLEVTW SSLPPDPPEH EVELVGPPSL VADTGFGGHR bmy_21808T0/1-707 LELKREFAFD DALRMLEVTW SSLPPDPPEH EVELVGPPSL VADTGFGGHR BACU008476/1-663 LELKREFAFD DALRMLEVTW SSLPPDPPEH EVELVGPPSL VADTGFGGHR 551 600 ENSP00000365962/1-688 GWPVRQRHML RPAGGGGSTF EDAVDHLATA SQGPGGGGRL LRQASLDGLQ ENSBTAP00000012236/1-737 GRPMRQRHML RPAGGGGGAF EDAVDHLTTS SQGPGGGGRL LRQASLDDLQ ENSTTRP00000008138/1-685 GRPVRQRHML RPAGGGDGAF EDAVDHLATT SQGPGGGGRL LRQASLDDLQ bmy_21808T0/1-707 GRPVRQRHML RPAGGGGGAF EDAVDHLAAT SQGPGGGGRL LRQASLDDLQ BACU008476/1-663 GRPVRQRHML RPAGGGGGAF EDAVDHLAAT SQGPGGGGRL LRQASLDDLQ 601 650 ENSP00000365962/1-688 QLRDNMGSRR DPLVQLPHPA ALISSKSLSE PLLNSPDPLL SSFSHPDSPS ENSBTAP00000012236/1-737 QLRDRTGPRR DSLIQLPYPA ALIGSKSLSE PLLNSSDPLL SPSSHPDSPS ENSTTRP00000008138/1-685 QLRDNTGPRR DLLVQLPHPA ALISSKSLSE PLLNSSDPLL SSSSHPDSPS bmy_21808T0/1-707 QLRDNTGPRR DLLVQLPHPA ALISSKSLSE PLLNSSDPLL SSSSHPDSPS BACU008476/1-663 QLRDNTGPRR DLLVQLPHPA ALISSKSLSE PLLNSSDPLL SSSSHPDSPS 651 700 ENSP00000365962/1-688 SSSPPSTQEA SPTGDMAVGS PLMQEVGSPK DPGKSLPPVP PMGLPPPQEF ENSBTAP00000012236/1-737 SSSPPSTQDA SPAGDVAAGS PLMPEVGSPQ DSGKSLPPPP PLGLPPPQEF ENSTTRP00000008138/1-685 SSSPPSTQDA SPTGDMAAGS PLMPEVGSPQ DPGKSLPPPP PLGLPPPQEF bmy_21808T0/1-707 SSSPPSTQDA SPTGDVTAGS PLMPEVGSPQ DPGKSLPPPP PLGLPPPQEF BACU008476/1-663 SSSPSSTQDA SPTGDVTAGS PLMPE----- ---------- --------EF 701 750 ENSP00000365962/1-688 GRGNPFMLFL CLAILLEHRD HIMRNGLDYN ELAMHFDRLV RKHHLGRVLR ENSBTAP00000012236/1-737 GRGNPFMLFL CLAILLEHRD HIMRNGLDYN ELAMHFDRLV RKHHLGRVLR ENSTTRP00000008138/1-685 GRGNPFMLFL CLA-LLEHRD HIMRNGLDYN ELAMHFDRLV RKHHLGRVLR bmy_21808T0/1-707 GRGNPFMLFL CLAILLEHRD HIMRNGLDYN ELAMHFDRLV RKHHLGRVLR BACU008476/1-663 GRGNPFMLFL CLAILLEHRD HIMRNGLDYN ELAMHFDRLV RKHHLGRVLR 751 800 ENSP00000365962/1-688 RARALFADYL QSEVWDSEEG AEATAAS ENSBTAP00000012236/1-737 RAKALFADYL QSEMWDSEEG AEATAPS ENSTTRP00000008138/1-685 RAKALFADYL QSEVWDSEEG AEATAPS bmy_21808T0/1-707 RAKALFADYL QSEVWDSEEG AEATAPS BACU008476/1-663 RAKALFADYL QSEVWDSEEG AEATAPS