KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:46:05 2014 Check: 00 .. Name: ENSTTRP00000002071/1-1305 Len: 1480 Check: 5793 Weight: 1.00 Name: bmy_06597T0/1-1340 Len: 1480 Check: 1912 Weight: 1.00 Name: BACU002148/1-1208 Len: 1480 Check: 8196 Weight: 1.00 Name: ENSP00000253048/1-1303 Len: 1480 Check: 8979 Weight: 1.00 Name: ENSBTAP00000012237/1-1305 Len: 1480 Check: 3083 Weight: 1.00 // 1 50 ENSTTRP00000002071/1-1305 -------MEA AP-------- ---------G TPPPPPSESL PPPSPPPPST bmy_06597T0/1-1340 MRFLSSTVFA KPMDRQSRCS PLGEIQDGTG SGPRPVSPGL SPSALGPPVP BACU002148/1-1208 -------MLG RAAEEEE--- ---EEEEGRG ---------- ---------- ENSP00000253048/1-1303 -------MEA AP-------- ---------G TPPPPPSESP PPPSPPPPST ENSBTAP00000012237/1-1305 -------MEA AP-------- ---------G TPPPPPSESP PPPSPPPPST 51 100 ENSTTRP00000002071/1-1305 PSPPPCSPDA CLATPHLLHH RLPLPDDRED GELEEGELED DGAEETQDAS bmy_06597T0/1-1340 VALGQPTAPA ALPSNPVLTS ALGLV-RRED GELEEGELED DGAEETQDAS BACU002148/1-1208 ---------- ---------- -------RED GELEEGELED DGAEETQDAS ENSP00000253048/1-1303 PSPPPCSPDA RPATPHLLHH RLPLPDDRED GELEEGELED DGAEETQDTS ENSBTAP00000012237/1-1305 PSPPLCSPDA CLATPHLL-H RLPLPDDRED GELEEGELED DGAEETQDTS 101 150 ENSTTRP00000002071/1-1305 GGPERSRKEK GEKHHSDSDE EKSHRRLKRK RKKEREKEKR RSKKRRKSKH bmy_06597T0/1-1340 GGXERSRKEK GEKHHSDSDE EKSHRRLKRK RKKEREKEKR RSKKRRKSKH BACU002148/1-1208 GGPERSRKEK GEKHHSDSDE EKSHRRLKRK RKKEREKEKR RSKKRRKSKH ENSP00000253048/1-1303 GGPERSRKEK GEKHHSDSDE EKSHRRLKRK RKKEREKEKR RSKKRRKSKH ENSBTAP00000012237/1-1305 GGPERSRKEK GEKHHSDSDE EKSHRRLKRK RKKEREKEKR RSKKRRKSKH 151 200 ENSTTRP00000002071/1-1305 KRHASSSDDF SDFSDDSDFS PSEKGHRKYR EYSPPYAPXX XXXXXXXXXX bmy_06597T0/1-1340 K--------- ---------- ---------- --------SH QQYPPSHTAP BACU002148/1-1208 KRHASSSDDF SDFSDDSDFS PSEKGHRKYR EYSPPYAPSH QQYPPSHTAP ENSP00000253048/1-1303 KRHASSSDDF SDFSDDSDFS PSEKGHRKYR EYSPPYAPSH QQYPPSHATP ENSBTAP00000012237/1-1305 KRHASSSDDF SDFSDDSDFS PSEKGHRKYR EYSPPYAPSH QQYPPSHTTP 201 250 ENSTTRP00000002071/1-1305 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_06597T0/1-1340 LPKKAYSKMD SKGYGLYEDY ENEQYGEYEG EEEEDMGKDD YDDFAKELNQ BACU002148/1-1208 LPKKAYSKMD SKGYGLYEDY ENEQYGEYEG EEEEDMGKDD YDDFAKELNQ ENSP00000253048/1-1303 LPKKAYSKMD SKSYGMYEDY ENEQYGEYEG DEEEDMGKED YDDFTKELNQ ENSBTAP00000012237/1-1305 LPKKSYSKMD SKGYGMYDDY ENEQYGEYEG DEEEDMGKDD YDDFTKELNQ 251 300 ENSTTRP00000002071/1-1305 XXXXXXXXXX XXX------- ---------- ---------- ---------- bmy_06597T0/1-1340 YRRAKEGSSR GRGESRSFSS RLSERTRGWG LGAQCRARQT SWATCSWSVK BACU002148/1-1208 YRRAKEGSSR GRG------- ---------- ---------- ---------- ENSP00000253048/1-1303 YRRAKEGSSR GRG------- ---------- ---------- ---------- ENSBTAP00000012237/1-1305 YRRAKEGSSR GRG------- ---------- ---------- ---------- 301 350 ENSTTRP00000002071/1-1305 ---------- ---------- ---------- ----NRGRGR GYRGRGSRGG bmy_06597T0/1-1340 SGRRDGQSCR AEISIEGDRQ GAPSQAQGTG VLPRNRGRGR GYRGRGSRGG BACU002148/1-1208 ---------- ---------- ---------- ----NRGRGR GYRGRGSRGG ENSP00000253048/1-1303 ---------- ---------- ---------- ----SRGRGR GYRGRGSRGG ENSBTAP00000012237/1-1305 ---------- ---------- ---------- ----SRGRGR GYRGRGSRGG 351 400 ENSTTRP00000002071/1-1305 SRGRGMGRGS RGRGRGSVGG DHPEDEEDFY EEDMEXXXXX XXXXXXXXXX bmy_06597T0/1-1340 SRGRGMGRGS RGRGRGSMGG DHPEDEEDFY EEDMEYGESE EPMGDEDYDD BACU002148/1-1208 SRGRGMGRGS RGRGRGAMGG DHPEDEEDFY EEDMEYGESE EPMGDDDYDD ENSP00000253048/1-1303 SRGRGMGRGS RGRGRGSMGG DHPEDEEDFY EEEMDYGESE EPMGDDDYDE ENSBTAP00000012237/1-1305 SRGRGMGRGG RGRGRGSVGG DHPEDEEDFY EEEMDYGESE EPMGDEDYDD 401 450 ENSTTRP00000002071/1-1305 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_06597T0/1-1340 YSKELNQYRR SKDGRGRGLS RGRGRGSRGR GKGMGRGRGR GGSRGGMNKG BACU002148/1-1208 YSKELNQYRR SKDGRGRGLS RGRGRGSRGR GKGMGRGRGR GGSRGGMNKG ENSP00000253048/1-1303 YSKELNQYRR SKDSRGRGLS RGRGRGSRGR GKGMGRGRGR GGSRGGMNKG ENSBTAP00000012237/1-1305 YSKELSQYRR SKDGRGRGLS RGRGRGSRGR GKGMGRGRGR GGSRGGMNKG 451 500 ENSTTRP00000002071/1-1305 XXXXXXXXXX XXXXDG-GGS YRRGDHDKPH QQSDKKGKVI CKYFVEGRCT bmy_06597T0/1-1340 GMNDDEDFYD EDMGDG-GGS YRRGDHDKPH QQSDKKGKVI CKYFVEGRCT BACU002148/1-1208 GMNDDEDFYD EDMGDG-GGS YRRGDHDKPH QQSDKKGKVI CKYFVEGRCT ENSP00000253048/1-1303 GMNDDEDFYD EDMGDGGGGS YRSRDHDKPH QQSDKKGKVI CKYFVEGRCT ENSBTAP00000012237/1-1305 GMNDDEDFYD DDMGDG-GGS YRRSDHDKPH QQSDKKGKVI CKYFVEGRCT 501 550 ENSTTRP00000002071/1-1305 WXXXXXXXXX XXXXXXXXXX XXXXXXXXXX AENCPYMHG- ---------D bmy_06597T0/1-1340 W--------- ---------- ---------- ---------- ---------- BACU002148/1-1208 WGDHCNFSHD IELPKKRELC KFYITGFCAR AENCPYMHGE AFALTCRERD ENSP00000253048/1-1303 WGDHCNFSHD IELPKKRELC KFYITGFCAR AENCPYMHG- ---------D ENSBTAP00000012237/1-1305 WGDHCNFSHD IELPKKRELC KFYITGFCAR AENCPYMHG- ---------D 551 600 ENSTTRP00000002071/1-1305 FPCKLYHTTG NCINGDDCMF SHDPLTEETR ELLDKMLADD AEAGAEDEKE bmy_06597T0/1-1340 ---------- ---------- ---------- -----MLADD AEAGAEDEKE BACU002148/1-1208 FPCKLYHTTG NCINGDDCMF SHDPLTEETR ELLDKMLADD AEAGAEDEKE ENSP00000253048/1-1303 FPCKLYHTTG NCINGDDCMF SHDPLTEETR ELLDKMLADD AEAGAEDEKE ENSBTAP00000012237/1-1305 FPCKLYHTTG NCINGDDCMF SHDPLTEETR ELLDKMLADD AEAGAEDEKE 601 650 ENSTTRP00000002071/1-1305 VEELKKQGIN PLPKPPPGVG LLPTPPRPPG PPAPTSPNGR PMQGGPPPPP bmy_06597T0/1-1340 VEELKKQGIN PLPKPPPGVG LLPTPPRPPG PPAPTSPNGR ---------- BACU002148/1-1208 VEELKKQGIN PLPKPPPGVG LLPTPP---- ---------- ---------- ENSP00000253048/1-1303 VEELKKQGIN PLPKPPPGVG LLPTPPRPPG PQAPTSPNGR PMQGGPPPPP ENSBTAP00000012237/1-1305 VEELKKQGIN PLPKPPPGVG LLPTPPRPPG PPAPTSPNGR PMQGGPPPPP 651 700 ENSTTRP00000002071/1-1305 PPPPPPPGPP QLPMPVHEPL SPQQLQQQQD MYNKKIPSLF EIVVRPTGQL bmy_06597T0/1-1340 ---PPPPGPP QLPMPVHEPL SPQQLQQQQD MYNKKIPSLF EIVVRPTGQL BACU002148/1-1208 ---------- -LPMPVHEPL SPQQLQQQQD MYNKKIPSLF EIVVRPTGQL ENSP00000253048/1-1303 PPPPPPPGPP QMPMPVHEPL SPQQL-QQQD MYNKKIPSLF EIVVRPTGQL ENSBTAP00000012237/1-1305 PPPPPPPGPP QMPLPAHEPL SPQQLQQQQD MYNKKIPSLF EIVVRPTGQL 701 750 ENSTTRP00000002071/1-1305 AEKLGVRFPG PGGPPGPMGP GPNMGPPGPM GAPMHPDMHP DMHPDMHPDM bmy_06597T0/1-1340 AEKLGVRFPG PGGPPGPMGP GPNMGPPGPM GAPMHPDMHP DMHPDMHPDM BACU002148/1-1208 AEKLGVRFPG PGGPPGPMGP GPNMGPPGPM GAPMHPDMHP DMHPDMHPDM ENSP00000253048/1-1303 AEKLGVRFPG PGGPPGPMGP GPNMGPPGPM GGPMHPDMHP DMHPDMHPDM ENSBTAP00000012237/1-1305 AEKLGVRFPG PGGPPGPMGP GPNMGPPGPM GGPMHPDMHP DMHPDMHPDM 751 800 ENSTTRP00000002071/1-1305 HPDMHPDMPM GPGMNPGPPM GPGGPPMMPY GPGDSPHSGM MPPIPPAQNF bmy_06597T0/1-1340 HPDMHPDMPM GPGMNPGPPM GPGGPPMMPY GPGDSPHSGM MPPIPPAQNF BACU002148/1-1208 HPDMHPDMPM GPGMNPGPPM GPGGPPMMPY GPGDSPHSGM MPPIPPAQNF ENSP00000253048/1-1303 HADMHADMPM GPGMNPGPPM GPGGPPMMPY GPGDSPHSGM MPPIPPAQNF ENSBTAP00000012237/1-1305 HPDMHPDMPM GPGMNPGPPM GPGGPPMMPY GPGDSPHSGM MPPIPPAQNF 801 850 ENSTTRP00000002071/1-1305 YENFYQQQEG MEMEPGLIGD A--EDYGHYE ELPGEPGEHL FPEHPLEPDS bmy_06597T0/1-1340 YENFYQQQEG MEMEPGLIGD A--EDYGHYE ELPGEPGEHL FPEHPLEPDS BACU002148/1-1208 YENFYQQQEG MEMEPGLIGD A--EDYGRYE ELPGEPGERL FPEHPLEPDS ENSP00000253048/1-1303 YENFYQQQEG MEMEPGLLGD A--EDYGHYE ELPGEPGEHL FPEHPLEPDS ENSBTAP00000012237/1-1305 YENFYQQQEG MEMEPGLIGD AATEDYGHYE ELPGEPGEHL FPEHPLEPDS 851 900 ENSTTRP00000002071/1-1305 FPEGGPPGRP KPGAGVPDFL PSAQRALYLR IQQKQQEEEE RARRLAERSK bmy_06597T0/1-1340 FPEGGPPGRP KPGAGVPDFL PSAQRALYLR IQQKQQEEEE RARRLAESSK BACU002148/1-1208 FPEGGPPGRP KPGAGVPDFL PSAQRALYLR IQQKQQEEEE RARRLAESSK ENSP00000253048/1-1303 FSEGGPPGRP KPGAGVPDFL PSAQRALYLR IQQKQQEEEE RARRLAESSK ENSBTAP00000012237/1-1305 FSEGGPPGRP KPGAGVPDFL PSAQRALYLR IQQKQQ-EEE RARRLAESSK 901 950 ENSTTRP00000002071/1-1305 QDRESEE--- ---------- ---------- ---------- ---------- bmy_06597T0/1-1340 QDRENEEGMC PPQGQGPSPT GAGPPGRHAG EREEKQVLRG KRQGSGLPWG BACU002148/1-1208 QDRENEEGMC PPQERGLPRR AQAP------ ----RAAVQG R--------- ENSP00000253048/1-1303 QDRENEE--- ---------- ---------- ---------- ---------- ENSBTAP00000012237/1-1305 QDRENEE--- ---------- ---------- ---------- ---------- 951 1000 ENSTTRP00000002071/1-1305 ---------- ---------- --GDTGNWYS SDEDEGGNSV TSILKTLRQQ bmy_06597T0/1-1340 PRGLAADVVA AHPLPAPFCF FSGDTGNWYS SDEDEGGSSV TSILKTLRQQ BACU002148/1-1208 ---------- ---------- --GDTGNWYS SDEDEGGSSV TSILKTLRQQ ENSP00000253048/1-1303 ---------- ---------- --GDTGNWYS SDEDEGGSSV TSILKTLRQQ ENSBTAP00000012237/1-1305 ---------- ---------- --GDTGNWYS SDEDEGGSSV TSILKTLRQQ 1001 1050 ENSTTRP00000002071/1-1305 TSSRPQASVG ELSSTGLGDP RLQKGHPTGG RLADPRLSRD PRLSRHVEAS bmy_06597T0/1-1340 TSSRPQASIG ELSSSGLGDP RLQKGHPTGG RLADPRLSRD PRLTRHAEAS BACU002148/1-1208 TSSRPQASVG ELSSSGLGDP RLQKGHPTGG RLADPRLSRD PRLTRHAEAS ENSP00000253048/1-1303 TSSRPPASVG ELSSSGLGDP RLQKGHPTGS RLADPRLSRD PRLTRHVEAS ENSBTAP00000012237/1-1305 TSSRPQASVG ELSGSGLGDP RLQKGHPTGG RLADPRLSRD PRLSRHAEAS 1051 1100 ENSTTRP00000002071/1-1305 SSSGPGDTGP SDPRLARSLS TPKPEGGLHS SPAGPSGSKG SGPPPAEEEE bmy_06597T0/1-1340 SSSGPGDTGP SDPRLARSLS TPKPEGGLHS SPAGPSGSKG SGPPPAEEEE BACU002148/1-1208 SSSGPGDTGP SDPRLARSLS TPKPEGGLHS SPSGPSGSKG SGPPPAEEEE ENSP00000253048/1-1303 GGSGPGDSGP SDPRLARALP TSKPEGSLHS SPVGPSSSKG SGPPPTEEEE ENSBTAP00000012237/1-1305 SGSGPGDTGP SDPRLARSLP SSKPDGGLHS SPAGPGGSKG SGPPPAEEEE 1101 1150 ENSTTRP00000002071/1-1305 GERALREKAV NIPLDPLPGH PLRDPRSQLQ QFSHIKKDVT LSKPSFARTV bmy_06597T0/1-1340 GERALREKAV NIPLDPLPGH PLRDPRSQLQ QFSHIKKDVT LSKPSFARTV BACU002148/1-1208 GERALREKAV NIPLDPLPGH PLRDPRSQLQ QFSHIKKDVT LSKPSFARTV ENSP00000253048/1-1303 GERALREKAV NIPLDPLPGH PLRDPRSQLQ QFSHIKKDVT LSKPSFARTV ENSBTAP00000012237/1-1305 GERALREKAV NIPLEPLPGH PLRDPRSQLQ QFSHIKKDVT LSRPSFARTV 1151 1200 ENSTTRP00000002071/1-1305 LWNPEDLIPL PIPKQDAVPP VPAALQSLPA LDPRLHRTTT SGPPNPRQRP bmy_06597T0/1-1340 LWNPEDLIPL PIPKQDAVPP VPAALQSMPA LDPRLHRTTT SGPPNPRQRP BACU002148/1-1208 LWNPEDLIPL PIPKQDAVPP VPAALQSMPA LDPRLHRTAT SGPPNPRQRP ENSP00000253048/1-1303 LWNPEDLIPL PIPKQDAVPP VPAALQSMPT LDPRLHRAAT AGPPNARQRP ENSBTAP00000012237/1-1305 LWSPEDLIPL PLPKQEAAPP VPAALQSLPA LDPRLHRAAA SGPPNSRQRA 1201 1250 ENSTTRP00000002071/1-1305 GTSTDPSTSG SSLPDFELLS RILKTVNATG PSAAPGPGDK PSDPRVRKTP bmy_06597T0/1-1340 GTSTDPSTSG SNLPDFELLS RILKTVNATG PSAAPGPGDK PSDPRVRKTP BACU002148/1-1208 GTSTDPSTSG SNLPDFELLS RILKTVNATG PSAAPGPGDK PSDPRVRKTP ENSP00000253048/1-1303 GASTDSSTQG ANLPDFELLS RILKTVNATG SSAAPGSSDK PSDPRVRKAP ENSBTAP00000012237/1-1305 GNSADAGAAG SSLPDFELLS RILKTVNVTG PLATPGSGDK PSDPRVRKTP 1251 1300 ENSTTRP00000002071/1-1305 TDPRLQKPAD SA-ASSRAAK PGPTEAPSPA ASPSGESSPP ATAPYDPRVL bmy_06597T0/1-1340 SDPRLQKPAD SA-ASSRAAK PGPTEAPSPA ASPSGESSPP ATAPYDPRVL BACU002148/1-1208 TDPRLQKPAD SA-ASSRAAK PGPTEAPSPA ASPSGESSPP ATAPYDPRVL ENSP00000253048/1-1303 TDPRLQKPTD ST-ASSRAAK PGPAEAPSPT ASPSGDASPP ATAPYDPRVL ENSBTAP00000012237/1-1305 TDPRLQKPTD SATASSRAAK PGPAEVPSPA ASPSGESSPP ATAPYDPRVL 1301 1350 ENSTTRP00000002071/1-1305 AAGGLGQGSG SGQSSVLSGI SLYDPRTPNT GGKAAEPAAD AGTQPKGPEG bmy_06597T0/1-1340 AAGGLGQGSG SGQSSVLSGI SLYDPRTPNA GGKAAEPAAD AGTQPKGPEG BACU002148/1-1208 AAGGLGQGSG SGQSSVLSGI SLYDPRTPNA GGKAAEPAAD AGTQPKGPEG ENSP00000253048/1-1303 AAGGLGQGGG GGQSSVLSGI SLYDPRTPNA GGKATEPAAD TGAQPKGAEG ENSBTAP00000012237/1-1305 AAGGLGQGGG GGQSSVLSGI SLYDPRTPNA GGKAAEPAAD TGAQPKGPEG 1351 1400 ENSTTRP00000002071/1-1305 NGKSS-ATKA KEPPFVRKSA LEQPESGKSG ADGAAVTATD RYNSYNRPRP bmy_06597T0/1-1340 NGKSS-ATKA KEPPFVRKSA LEQPESGKSG ADGAAATATD RYNSYNRPRP BACU002148/1-1208 NGKSS-ATKA KEPPFVRKSA LEQPESGKSG ADGAAATATD RW-------- ENSP00000253048/1-1303 NGKSS-ASKA KEPPFVRKSA LEQPETGKAG ADGG--TPTD RYNSYNRPRP ENSBTAP00000012237/1-1305 NGRSSAAAKA KEPPFVRKSA LEQPESGKPG ADGA--TATD RYNSYNRPRP 1401 1450 ENSTTRP00000002071/1-1305 KAAAAPAAAT GAPPAEGVPP QPGVHNLPVP TLFGTVKQAP KTGSGSPFAG bmy_06597T0/1-1340 KAAAAPAAAT GAPPAEGAPP QPGVHNLPVP TLFGTVKQAP KTGSGSPFAG BACU002148/1-1208 --------VE SLCPPEG--- ------YPGP EMDRTLK--P RQTSRKP--- ENSP00000253048/1-1303 KAAAAPAATT ATPPPEGAPP QPGVHNLPVP TLFGTVKQTP KTGSGSPFAG ENSBTAP00000012237/1-1305 KAAAAPAAAV GAPSAEGSLP QPGVHNLPVP TLFGTVKPAP KTGSGSPFAG 1451 1500 ENSTTRP00000002071/1-1305 NSPAQEGEQD AGSLKDVFKG FDPTASPFCQ bmy_06597T0/1-1340 NSPAQEGEQD AGSLKDVFKG FDPTASPFCQ BACU002148/1-1208 ---------- ---------- ---------- ENSP00000253048/1-1303 NSPAREGEQD AASLKDVFKG FDPTASPFCQ ENSBTAP00000012237/1-1305 NSPAQEGEQD AGSLKDVFKG FDPTASPFCQ