KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:46:05 2014 Check: 00 .. Name: ENSP00000385158/1-716 Len: 730 Check: 2651 Weight: 1.00 Name: ENSBTAP00000012239/1-661 Len: 730 Check: 5964 Weight: 1.00 Name: ENSTTRP00000016270/1-719 Len: 730 Check: 9101 Weight: 1.00 Name: bmy_02994T0/1-599 Len: 730 Check: 7510 Weight: 1.00 Name: BACU013710/1-727 Len: 730 Check: 9417 Weight: 1.00 // 1 50 ENSP00000385158/1-716 MATSHRVAKL VASSLQTPVN PITGARVAQY EREDPLKALA AAEAIL---- ENSBTAP00000012239/1-661 MAASHRAAKL AASSLQTPVN PNTRARVAQY ERKDPLNSLS AAAAAM---- ENSTTRP00000016270/1-719 MAASHRAAKL AASSLQTPVN PSTGARVTHY ERKDPVESLS AAAAAL---- bmy_02994T0/1-599 ---------- ---------- ---------- ---------- ---------- BACU013710/1-727 MAASHRAAKV AASSLQTPVN PSTGARVTHY ERKDPVESLS AAAAAALEEE 51 100 ENSP00000385158/1-716 -------EDE EEEKVAQPAG ASADLNTSFS GVDEHAPISY EDFVNFPDIH ENSBTAP00000012239/1-661 -------EEE EEEEEAAPAS YQADFNTSIS RVNEQKHISH EDFVNFSDIY ENSTTRP00000016270/1-719 -----EETEE EEEEAAELAR APADFNTSIS GVNEQKRISC EDFVDLSDIY bmy_02994T0/1-599 ---------- ---------- --ADFNTNIS GVNEQKRISC EDFVDFSDIY BACU013710/1-727 EEEQEEKEEE EEEEAEGSAR APADFNTNIS GVNEQKRISC EDFVDFSDIY 101 150 ENSP00000385158/1-716 HSNEEYFKKV EELKAAHIET MAKLEKMYQD KLHLKEVQPV VIREDSLSDS ENSBTAP00000012239/1-661 HSNEEYFRKL EELKAAHIET MAKLEKLYQS KLNLKEVQPA VTREEAASVS ENSTTRP00000016270/1-719 HSNEEYFRKL EELKAAHMET MAKLEKMYQN KLNLKEVQLA ITMEEAASVS bmy_02994T0/1-599 HSNEEYFRKL EELKAAHMET MAKLEKMYQN KLNLKEVQPA ITMEEAASVS BACU013710/1-727 HSNEEYFRKL EELKAAHMET MAKLEKMYQN KLNLKEVQPA ITMEEAASVS 151 200 ENSP00000385158/1-716 SRSVSEKNSY HPVSLMTSFS EPDLGQSSSL YVSSSEEELP NLEKEYPRKN ENSBTAP00000012239/1-661 SGSLSEKNSY HPVSLMTSIS EPDLSQSSSL IVSSSEEELP NLEKKYSEKS ENSTTRP00000016270/1-719 SRSVSEKSSH HPVSLMTSIS EPDLGQSSSL IVSSSEDELP NVEKEYSEKS bmy_02994T0/1-599 SRSVSEKSSH HPVSLMTSIS EPDLGQSSSL IVSSSEDELP NVEKEYSERS BACU013710/1-727 STSVSEKSSH HPVSFMTSIS EPDLGQSSSL IVSSSEDELP NVEKEYSERS 201 250 ENSP00000385158/1-716 RMMTYAKELI NNMWTDFCVE DYIRCKDTGF HAAEKRRKKR KEWVPTITVP ENSBTAP00000012239/1-661 GMMTYAKELI NNMWTNFSVE DYIQHEDVNL PVLEKQRKKP KEWVPRITVP ENSTTRP00000016270/1-719 RMMTYAKELI NNMWTNFSVE DYIQFEDADL PAFEKKKKKP KEWVPKITVP bmy_02994T0/1-599 RMMTFAKELI NNMWTNFSVE DYIQFEDADL PALEKKKKKP KEWVPKITVP BACU013710/1-727 RMMTFAKELI NNMWTNFSVE DYIQFEDADL PALEKKKKKP KEWVPKITVP 251 300 ENSP00000385158/1-716 EPFQMMIREQ KKKEESMKSK SDIEMVHKAL KKQEEDPEYK KKFRANPVPA ENSBTAP00000012239/1-661 EPFQMMVREQ KKKEENMKSK SDIEMVHKLL KKQEEESECK KKFRANPVPA ENSTTRP00000016270/1-719 EPFQMMIREQ KKKEENMKSK SDIEMARKLL KKQEEESECK KKFRANPVPA bmy_02994T0/1-599 EPFQMMIREQ KKKEENMKSK SDIEMARKLL KKQEEESECK KKFRANPVPA BACU013710/1-727 EPFQMMIREQ KKKEENMKSK SDIEMARKLL KKQEEESECK KKFRANPVPA 301 350 ENSP00000385158/1-716 SVFLPLYHDL VKQKEERRRS LKEKSKEALL ASQKPFKFIA REEQKRAARE ENSBTAP00000012239/1-661 FVFLPLYHDI VKQNEVRRRA MKERNKEALL ASQKPFKFVA REEQKQAVRE ENSTTRP00000016270/1-719 FVFLPLYHDI VKQNEERRRC TKEKNEEALL ASQKPFKFIA REEQKRAIWE bmy_02994T0/1-599 FVFLPLYHDI VKQNEERRRS MKEKNKEALL ASQKPFKFIA REEQKQ-IRE BACU013710/1-727 FVFLPLYHDI VKQNEERRRS MKEKNKEALL ASQKPFKFIA REEQKQ-IRE 351 400 ENSP00000385158/1-716 KQLRDFLKYK KKTNRFKARP IPRSTYGSTT NDKLKEEELY RNLRTQLRAQ ENSBTAP00000012239/1-661 KQLKDFFKSK KKTNRFKARP VPRSTYSSTI NDKLTEEELY KNMRAQQRTQ ENSTTRP00000016270/1-719 KQLKDFFKSK KKTNRFKARP ILRSTYGSTI NGKLTEEELC RNIRTQQRTQ bmy_02994T0/1-599 KQLKDFFKSK KKTNQFKARP IPRSTYGSTI NDKLTEEELY RNIRTQQRTQ BACU013710/1-727 KQLKDFFKSK KKTNQFKARP IPRSTYGSTI NDKLTEEELY RNIRTQQRTQ 401 450 ENSP00000385158/1-716 EHLQNSSPLP C---RSACGC RNPRCPEQAV KLKCKHKVRC PTPDFEDLPE ENSBTAP00000012239/1-661 DFLQNPSPRP YSPARRSFAT RKSRGPEQAE KSKYKHRVRR QAADSEDLPE ENSTTRP00000016270/1-719 DFLQNSSPLP CSPARRSYAT RKPKCPEQAE TSKCKHNVRC QAADSEDRPE bmy_02994T0/1-599 DFLQNSFPLP CSPARRSYAT RKPKCPEQAE KSKCKHKVRC QTADSEDLPE BACU013710/1-727 DFLQNSFPLP CSPARRSYAT RKPKCPEQAE KSKCKHKVRC QTADSEDLPE 451 500 ENSP00000385158/1-716 RYQKHLSEHK SPKLLTVCKP FDLHASPHAS IKREKILADI EADEENLKET ENSBTAP00000012239/1-661 RYQKHHSEQK YRKFLTVCEP CDLQAASHSA TKREKILADI EADEENLKET ENSTTRP00000016270/1-719 RYKKHHSEQK CPKPLTVCEP SDLPAASHAS TEREKILADI EADEENLKET bmy_02994T0/1-599 RYQEHHSDQK CPKPLRVCEP SDLHAASHAS TKREKILADI EADEENLKET BACU013710/1-727 RYQKHHSEQR CPKPLTVCEP SDLHAASHAS TKREKILADI EADEENLKET 501 550 ENSP00000385158/1-716 RWPYLSPRRK SPVRCAGVNP VPCNCNPPVP TVSSRGREQA VRRSLEEKKM ENSBTAP00000012239/1-661 RWPYLSPRRK SPVRAANTKP APCSCNPPTP TVSSRGREQA T--------- ENSTTRP00000016270/1-719 RWPYLSPRRR SPVRSRNAKP VPCSCNPPMP TVSSRGREQA TRRSLEEKKM bmy_02994T0/1-599 RWPYLSPRRR SPVRSINAKP VPCSCNPPMP TVSSRGREQA T--------- BACU013710/1-727 RWPYLSPRRR SPVRSINAKP VPCSCNPPMP TVSSRGREQA TRRSLEEKKM 551 600 ENSP00000385158/1-716 LEEERNRILT KQKQRMKELQ KLLTTRAKAY DSHQSLAQIS KSRVKCLRKS ENSBTAP00000012239/1-661 ---------- ---------- ---------- ---------- -------RKS ENSTTRP00000016270/1-719 LEEERNRILT KQKQRMKELQ KLLTTRAKAY DSHQSLAQMS KSRVKSLRKS bmy_02994T0/1-599 ---------- ---------- ---------- ---------- -------RKS BACU013710/1-727 LEEERNRILT KQKQRMKELQ KLLTTRAKAY DSHQSLAQMS KSRVKSLRKS 601 650 ENSP00000385158/1-716 EKERMREYQR ELEEREEKLK KRPLLFERVA QKNARMAAEK HYSNTLKALG ENSBTAP00000012239/1-661 EKERMREYRR ELEEREEKLK NRPLLFERVA QKNARMAAEK HYSNTLKALG ENSTTRP00000016270/1-719 EKERMREYRR ELEEREEKLK NRPLLFERVA QKNARMAAEK HYSNTLKALG bmy_02994T0/1-599 EKERMREYRR ELEEREEKLK NRPLLFERVA QKNARMAAEK HYSNTLKALG BACU013710/1-727 EKERMREYRQ ELEEREEKLK NRPLLFERVA QKNARMAAEK HYTNTLKALG 651 700 ENSP00000385158/1-716 ISDEFVSKKG QSGKVLEYFN NQETKSVTED KESFNEEEKI EERENGEENY ENSBTAP00000012239/1-661 ISDEFVSKKG QSGKIFEYFS NQEMKNFTED KESFNEEEKI EERENGEENY ENSTTRP00000016270/1-719 ISDEFVSKKG QSGKFFEYFS NQEMKSFTED KESFN-EEKI EERENGEENY bmy_02994T0/1-599 ISDEFVSKKG QSGKIFEYFS NQEMKSFTED KESFNEEEKR EERENGEENY BACU013710/1-727 ISDEFVSKKG QSGKILEYFS NQEMKSFTED KESFIEEEKR EERETGEENY 701 750 ENSP00000385158/1-716 FIDTNSQDSY KEKDEANEES EEEKSVEESH ENSBTAP00000012239/1-661 LTDTNSQDSC KETDEVNEEN GEEKCVEE-- ENSTTRP00000016270/1-719 LTDTNSQDSC KETGKADEES GEENCVEEN- bmy_02994T0/1-599 LTDTNSQDSC KETGKADEES GEENCVEE-- BACU013710/1-727 LTDTNSQDSC KETGKADEES GEENCVEE--