KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:46:07 2014 Check: 00 .. Name: ENSTTRP00000010148/1-723 Len: 752 Check: 9184 Weight: 1.00 Name: ENSP00000304783/1-744 Len: 752 Check: 636 Weight: 1.00 Name: ENSBTAP00000012245/1-741 Len: 752 Check: 311 Weight: 1.00 Name: bmy_17052T0/1-677 Len: 752 Check: 5084 Weight: 1.00 Name: BACU018214/1-733 Len: 752 Check: 9691 Weight: 1.00 // 1 50 ENSTTRP00000010148/1-723 MDHVEETEIL AATQRYYVER PIFSHPVLQE RLHKKDKISE SIGDKLKQAF ENSP00000304783/1-744 MDHAEENEIL AATQRYYVER PIFSHPVLQE RLHTKDKVPD SIADKLKQAF ENSBTAP00000012245/1-741 MDHAEENEIL GATKRYYVER PIFSHPVLQE RLHKKDKVSD SIGDKLKQAF bmy_17052T0/1-677 MDHAEENEIL AAAQRYYVER PIFSHPVLQE RLHKKDKISD SIGDKLKQAF BACU018214/1-733 MDHAEENEIL AAAQRYYVER PIFSHLVLQE RLHKKDKISD SIGDKLKQAF 51 100 ENSTTRP00000010148/1-723 TCTPKKIRNI IYMFLPITKW LPAYRFKEYV LGDIVSGIST GVLQLPQGLA ENSP00000304783/1-744 TCTPKKIRNI IYMFLPITKW LPAYKFKEYV LGDLVSGIST GVLQLPQGLA ENSBTAP00000012245/1-741 TCTPKKIRNI IYMFLPITKW LPAYKFKEYV LGDLVSGIST GVLQLPQGLA bmy_17052T0/1-677 TCTPKKIRNI IYMFLPITKW LPAYRFKEYV LGDLVSGVST GVLQLPQGLA BACU018214/1-733 TCTPKKIRNI IYMFLPITKW LPAYRFKEYV LGDLVSGIST GVLQLPQGLA 101 150 ENSTTRP00000010148/1-723 FAMLAAVPPV FGLYSSFYPV IMYCFFGTSR HISIGPFAVI SLMIGGVAVR ENSP00000304783/1-744 FAMLAAVPPI FGLYSSFYPV IMYCFLGTSR HISIGPFAVI SLMIGGVAVR ENSBTAP00000012245/1-741 FAMLAAVPPV FGLYSSFYPV IMYCFFGTSR HVSIGPFAVI SLMIGGVAVR bmy_17052T0/1-677 FAMLAAVPPV FGLYSSFYPV IMYCFFGTSR HISIGPFAVI SLMIGGVAVR BACU018214/1-733 FAMLAAVPPV FGLYSSFYPV IMYCFFGTSR HISIGPFAVI SLMIGGVAVR 151 200 ENSTTRP00000010148/1-723 LVPDDIVIPG GVNATNSTEA RDALRVKVAM SVTLLTGIIQ XXXXXXXXXX ENSP00000304783/1-744 LVPDDIVIPG GVNATNGTEA RDALRVKVAM SVTLLSGIIQ FCLGVCRFGF ENSBTAP00000012245/1-741 LVPDDIVIPG GVNATNGTEA RDALRVKVAM SVTLLSGIIQ FCLGVCRFGF bmy_17052T0/1-677 LVPDDMVIPG GVNATNGTEA RDALRVKVAM SVTLLSGIIQ FCLGVCRFGF BACU018214/1-733 LVPDDMVIPG GVNATNGTEA RDALRVKVAM SVTLLSGIIQ -----VRFGF 201 250 ENSTTRP00000010148/1-723 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXX----- ENSP00000304783/1-744 VAIYLTEPLV RGFTTAAAVH VFTSMLKYLF GVKTKRYSGI FSVVY----- ENSBTAP00000012245/1-741 VAIYLTEPLV RGFTTAAAVH VFTSMLKYLF GVKTKRYSGI FSVVY----- bmy_17052T0/1-677 VAIYLTEPLV RGFTTAAAVH VFTSMLKYLF GVKTKRYSGI FSVVY----- BACU018214/1-733 VAIYLTEPLV RGFTTAAAVH VFTSMLKYLF GVKTKRYSGI FSVVYVMFTV 251 300 ENSTTRP00000010148/1-723 --STVAVLQN VKNLNVCSLG VGLMVFGLLL GGKEFNERFK EKLPAPIPLE ENSP00000304783/1-744 --STVAVLQN VKNLNVCSLG VGLMVFGLLL GGKEFNERFK EKLPAPIPLE ENSBTAP00000012245/1-741 --STVAVLQN VKNLNVCSLG VGLMVFGLLL GGKEFNERFK EKLPAPIPLE bmy_17052T0/1-677 --STVAVLQN VKNLNVCSLG VGLMVFGLLL GGKEFNERFK EKLPAPIPLE BACU018214/1-733 LQSTVAVLQN VKNLNVCSLG VGLMVFGLLL GGKEFNERFK EKLPAPIPLE 301 350 ENSTTRP00000010148/1-723 FFAVVMGTGI SAGFSLHESY NVDVVGTLPL LLVIDT---- -LFH-VY-DI ENSP00000304783/1-744 FFAVVMGTGI SAGFNLKESY NVDVVGTLPL GLLPPANPDT SLFHLVYVDA ENSBTAP00000012245/1-741 FFAVVMGTGI SAGFNLHESY NVDVVGTLPL GLLPPANPDT SLFHLVYVDA bmy_17052T0/1-677 FFAVVMGTGI SAGFNLHESY SVDVVGTLPL GLLPPANPDT SLFHLVYVDA BACU018214/1-733 FFAVVMGTGI SAGFNLNESY NVDVVGTLPL G--------- -LFHLVYVDA 351 400 ENSTTRP00000010148/1-723 IAI------- -----DSVIM KTAHYSNGNQ ELIALGLCNS TGSLFQTFAI ENSP00000304783/1-744 IAIAIVGFSV TISMAKTLAN KHGYQVDGNQ ELIALGLCNS IGSLFQTFSI ENSBTAP00000012245/1-741 IAIAIVGFSV TISMAKTLAN KHGYQVDGNQ ELIALGLCNS IGSLFQTFSI bmy_17052T0/1-677 IAIAIVGFSV TISMAKTLAN KHGYQVDGNQ ELIALGLCNS IGSLFQTFSI BACU018214/1-733 IAIAIVGFSV TISMAKTLAN KHGYQVDGNQ ELIALGLCNS IGSLFQTFSI 401 450 ENSTTRP00000010148/1-723 SCSLSRSLVQ EGTGGKTQLA GCLASLMILL VILATGFLFE SLPQAVLSAI ENSP00000304783/1-744 SCSLSRSLVQ EGTGGKTQLA GCLASLMILL VILATGFLFE SLPQAVLSAI ENSBTAP00000012245/1-741 SCSLSRSLVQ EGTGGKTQLA GCLASLMILL VILATGFLFE SLPQAVLSAI bmy_17052T0/1-677 SCSLSRSLVQ EGTGGKTQLA GCLASLMILL VILATGFLFE SLPQAVLSAI BACU018214/1-733 SCSLSRSLVQ EGTGGKTQLA GCLASLMILL VILATGFLFE SLPQAVLSAI 451 500 ENSTTRP00000010148/1-723 VIVNLKGMFM QFSDLPFFWR TSKIELTIWL TTFVSSLFLG LDYGLITAVI ENSP00000304783/1-744 VIVNLKGMFM QFSDLPFFWR TSKIELTIWL TTFVSSLFLG LDYGLITAVI ENSBTAP00000012245/1-741 VIVNLKGMFM QFSDLPFFWR TSKIELTIWL TTFVSSLFLG LDYGLITAVI bmy_17052T0/1-677 VIVNLKGMFM QFSDLPFFWR TSKIELTIWL TTFVSSLFLG LDYGLITAVI BACU018214/1-733 VIVNLKGMFM QFSDLPFFWR TSKIELTIWL TTFVSSLFLG LDYGLITAVI 501 550 ENSTTRP00000010148/1-723 IALMTVIYRT QSPSYIVLGQ LPDTDVYIDI DAYEEVKEVP GIKIFQINAP ENSP00000304783/1-744 IALLTVIYRT QSPSYKVLGK LPETDVYIDI DAYEEVKEIP GIKIFQINAP ENSBTAP00000012245/1-741 IALLTVIYRT QSPSYKVLGQ LPDTDVYIDI DAYEEVKEIP GIKIFQINAP bmy_17052T0/1-677 IALLTVIYRT QRLAWVCV-- LPETAT---- -----VKEIP GIKIFQINAP BACU018214/1-733 IALLTVIYRT QSPSYKVLGQ LPDTDVYIDI DAYEEVKEIP GIKIFQINAP 551 600 ENSTTRP00000010148/1-723 IYYANSDLYS SALKRKTGVN PAFILGARRK AMKKYAKEVG NANMANATVV ENSP00000304783/1-744 IYYANSDLYS NALKRKTGVN PAVIMGARRK AMRKYAKEVG NANMANATVV ENSBTAP00000012245/1-741 IYYANSDLYS NALKRKTGVN PAFIMGARRK AMRKYAKEVG NANMANATVV bmy_17052T0/1-677 IYYANSDLYS SALKRKTGVN PALIMGARRK AMKKYAKEVG NANMANATIV BACU018214/1-733 IYYANSDLYS SALKRKTGVN PALIMGARRK AMKKYAKEVG NANMANATIV 601 650 ENSTTRP00000010148/1-723 KVTDAEVDAE DGTKPEEEED EIKYPPIVTK STLPEELQRF MPPGDNVHTI ENSP00000304783/1-744 KA-DAEVDGE DATKPEEEDG EVKYPPIVIK STFPEEMQRF MPPGDNVHTV ENSBTAP00000012245/1-741 KV-DAEVDGE DGTKPEEDEN EIKYPPIVIK STLPEELQRF MPPGDNIHTI bmy_17052T0/1-677 KV-DAEVDGE DGTKPEEEZN EIKYPPIVIK STLPEELQRF MPPGDN---- BACU018214/1-733 KV-DAEVDGE DGTKPEEEEN EIKYPPVVIK STLPEELQRF MPPGDNVHTI 651 700 ENSTTRP00000010148/1-723 ILDFTQVNFM DSVGVKTLAG IVKEYGDVGI YVYLAGCSAQ VVSDLTQNQF ENSP00000304783/1-744 ILDFTQVNFI DSVGVKTLAG IVKEYGDVGI YVYLAGCSAQ VVNDLTRNRF ENSBTAP00000012245/1-741 ILDFTQVNFI DSVGVKTLAG IVKEYGDVGI YVYLAGCSAQ VVNDLTRNRF bmy_17052T0/1-677 ---------- ---------- IVKEYGDVGI YVYLAGCS-- ---------- BACU018214/1-733 ILDFTQVNFI DSVGVKTLAG IVKEYGDVGI YVYLAGCSAQ VVNDLSRNQF 701 750 ENSTTRP00000010148/1-723 FENPALLDLL FHSIHDAVLG SQVREALAEQ EATAAPPQED SEPN---ATP ENSP00000304783/1-744 FENPALWELL FHSIHDAVLG SQLREALAEQ EASAPPSQED LEPNATPATP ENSBTAP00000012245/1-741 FENPALLELL FHSIHDAVLG SQAREALAEQ EGSAVPPQED SEPN---ATP bmy_17052T0/1-677 ---------- -------VLG SQVREALAEQ EATAAPPQED SEPN---ATP BACU018214/1-733 FENPALLELL FHSIHDAVLG SQVREALAEQ EATAAPPQED SEPN---ATP 751 800 ENSTTRP00000010148/1-723 EA ENSP00000304783/1-744 EA ENSBTAP00000012245/1-741 EA bmy_17052T0/1-677 EA BACU018214/1-733 EA