KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:46:08 2014 Check: 00 .. Name: ENSP00000017003/1-865 Len: 986 Check: 2689 Weight: 1.00 Name: ENSBTAP00000012247/1-867 Len: 986 Check: 7678 Weight: 1.00 Name: bmy_06721T0/1-681 Len: 986 Check: 1994 Weight: 1.00 Name: BACU006429/1-758 Len: 986 Check: 5515 Weight: 1.00 Name: ENSTTRP00000000187/1-864 Len: 986 Check: 5461 Weight: 1.00 // 1 50 ENSP00000017003/1-865 MVASARVQKL VRRYKLAIAT ALAILLLQGL VVWSFSGLEE DEAGEKGRQR ENSBTAP00000012247/1-867 MVASARVQKL VRRYKLAIAT ALAILLLQGL VVWSFSVLED DEPGEKGRQK bmy_06721T0/1-681 MVASVRVQKL VRRYKLAIAT ALAILLLQGL VVWSFSVLED DEPGEKGRQK BACU006429/1-758 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000187/1-864 MVASVRVQKL VRRYKXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXKGRQK 51 100 ENSP00000017003/1-865 KPRPLDPGEG SKDTDSSAGR RGSTGRRHGR WRGRAESPGV PVAKVVRAVT ENSBTAP00000012247/1-867 KSRPLDPSEG SKDTDSSAGR RGSAGRRHGR WRGRAESPGV PVAKVVRAVT bmy_06721T0/1-681 KPRPLDPGEG SKDTDSSAGR RGGAGRKHGR WRGRAESPGM PVAKVVRAVT BACU006429/1-758 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000187/1-864 KPRPLDPGEG SKDTDSSAGR RGGVGRKHGR WRGRAESPGV PVAKVVRAVT 101 150 ENSP00000017003/1-865 SRQRASRRVP PAPPPEAPGR QNLSGAAAGE ALVGAAGFPP HGDTGSVEGA ENSBTAP00000012247/1-867 SRHRTGRRIP PTPPPEAPGR QNLSGAAAEE ALVGAAGF-P HGDTGSVEGA bmy_06721T0/1-681 SRHRTSRRIP PTPPPEAPGR QNLSGAAAGE ALAGAAGF-P HGDTGSVEGA BACU006429/1-758 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000187/1-864 SRHRTSRRIP PTPPPEAPGR QNLSGAAAGE ALAGAAGF-P HGDTGSVEGA 151 200 ENSP00000017003/1-865 PQPTDNGFTP KCEIVGKDAL SALARASTKQ CQQEIANVVC LHQAGSLMPK ENSBTAP00000012247/1-867 PQPTDNSFTP KCEIVGKDAL SALARASSKQ CQQEIANVVC LHQAGSLMPK bmy_06721T0/1-681 PQPTDNSFTP KCEIVGKDAL SALARASSKQ CQQEIANVVC LHQAGSLMPK BACU006429/1-758 ---------- ---------- ---------- ---------- -------MPK ENSTTRP00000000187/1-864 PQPTDNSFTP KCEIVGKDAL SALARASSKQ CQQEIANVVC LHQAGSLMPK 201 250 ENSP00000017003/1-865 AVPRHCQLTG KMSPGIQWDE SQAQQPMDGP PVRIAYMLVV HGRAIRQLKR ENSBTAP00000012247/1-867 AVPRHCQRAG KMSPGIPWDE VRAQQPADGP PVRIAYMLVV HGRAIRQLKR bmy_06721T0/1-681 A--------- -MSPGIQWDD VRAQQPAGGP PVRIAYMLVV HGRAIRQLKR BACU006429/1-758 AVPRHCQRAG KMSPGIQWDD VRAQQPADGP PVRIAYMLVV HGRAIRQLKR ENSTTRP00000000187/1-864 AVPRHCQRAG KMSPGIQWDD VRAQQPVDGP PVRIAYMLVV HGRAIRQLKR 251 300 ENSP00000017003/1-865 LLKAVYHEQH FFYIHVDKRS DYLHREVVEL AQGYDNVRVT PWRMVTIWGG ENSBTAP00000012247/1-867 LLKAVYHKQH FFYVHVDERS NYLHREVVEL ARQYDNVRVT PWRMVTIWGG bmy_06721T0/1-681 LLKAVYHEQH FFYIHVDKRS NYLHREVVEL ARQYDNVRVT PWRMVTIWGG BACU006429/1-758 LLKAVYHEQH FFYIHVDKRS NYLHREVVEL ARQYDNVRVT PWRMVTIWGG ENSTTRP00000000187/1-864 LLKAVYHEQH FFYIHVDKRS NYLHREVVEL ARQYDNVRVT PWRMVTIWGG 301 350 ENSP00000017003/1-865 ASLLRMYLRS MRDLLEVPGW AWDFFINLSA TDYPTRTNEE LVAFLSKNRD ENSBTAP00000012247/1-867 ASLLRMYLRS MQDLLEVPGW AWDFFINLSA TDYPTRTNEE LVAFLSKNRD bmy_06721T0/1-681 ASLLRMYLRS MQDLLEVPDW AWDFFINLSA TDYPTRTNEE LVAFLSKNRD BACU006429/1-758 ASLLRMYLRS MQDLLEVPDW AWDFFINLSA TDYPTRTNEE LVAFLSKNRD ENSTTRP00000000187/1-864 ASLLRMYLRS MQDLLEVPDW AWDFFINLSA TDYPTRTNEE LVAFLSKNRD 351 400 ENSP00000017003/1-865 KNFLKSHGRD NSRFIKKQGL DRLFHECDSH MWRLGERQIP AGIVVDGGSD ENSBTAP00000012247/1-867 KNFLKSHGRD NSRFIKKQGL DRLFHECDSH MWRLGERQIP AGIVVDGGSD bmy_06721T0/1-681 KNFLKSHGRD NSRFIKKQGL DRLFHECDSH MWRLGERQIP AGIVVDGGSD BACU006429/1-758 KNFLKSHGRD NSRFIKKQGL DRLFHECDSH MWRLGERQIP AGIVVDGGSD ENSTTRP00000000187/1-864 KNFLKSHGRD NSRFIKKQGL DRLFHECDSH MWRLGERQIP AGIVVDGGSD 401 450 ENSP00000017003/1-865 WFVLTRSFVE YVVYTDDPLV AQLRQFYTYT LLPAE----- ---------- ENSBTAP00000012247/1-867 WFVLTRSFVE YVVYTDDPLV AQLRQFYTYT LLPAE----- ---------- bmy_06721T0/1-681 WFVLTRSFVE YVVYTDDPLV AQLRQFYTYT LLPAEVGDRA RTQAKRARGG BACU006429/1-758 WFVLTRSFVE YVVYTDDPLV AQLRQFYTYT LLPAE----- ---------- ENSTTRP00000000187/1-864 WFVLTRSFVE YVVYTDDPLV AQLRQFYTYT LLPAE----- ---------- 451 500 ENSP00000017003/1-865 ---------- ---SFFHTVL ENSLACETLV DNNLRVTNWN RKLGCKCQYK ENSBTAP00000012247/1-867 ---------- ---SFFHTVL ENSPACESLV DNNLRVTNWN RKLGCKCQYK bmy_06721T0/1-681 CPSSPSTLPC HPQSFFHTVL ENSPACESLV DNNLRVTNWN RKLGCKCQYK BACU006429/1-758 ---------- ---SFFHTVL ENSPACESLV DNNLRVTNWN RKLGCKCQYK ENSTTRP00000000187/1-864 ---------- ---SFFHTVL ENSPACESLV DNNLRVTNWN RKLGCKCQYK 501 550 ENSP00000017003/1-865 HIVDWCGCSP NDFKPQDFLR ---------- ---------- ---------- ENSBTAP00000012247/1-867 HIVDWCGCSP NDFKPQDFLR ---------- ---------- ---------- bmy_06721T0/1-681 HIVDWCGCSP NDFKPQDFLR ---------- ---------- ---------- BACU006429/1-758 HIVDWCGCSP NDFKPQDFLR LQVLPCDPQS LPRDRASPQL SPGAFQSEMI ENSTTRP00000000187/1-864 HIVDWCGCSP NDFQPQDFLR ---------- ---------- ---------- 551 600 ENSP00000017003/1-865 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012247/1-867 ---------- ---------- ---------- ---------- ---------- bmy_06721T0/1-681 ---------- ---------- ---------- ---------- ---------- BACU006429/1-758 QGGPTRESGG PSLGAALRGR GLHWQQERPW EADLQAVPGR APPLLCSLGP ENSTTRP00000000187/1-864 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000017003/1-865 ---------- LQQVSRPTFF ARKFESTVNQ EVLEILDFHL YGSYPPGTPA ENSBTAP00000012247/1-867 ---------- LQQVSRPTFF ARKFESTVNQ EVLEILDFHL YGSYPPGTPA bmy_06721T0/1-681 ---------- LQQVSRPTFF ARKFESTVNQ EVLEILDFHL YGSYPPGTPA BACU006429/1-758 PDPFTLLPSS LQQVSRPTFF ARKFESTVNQ EVLEILDFHL YGSYPPGTPA ENSTTRP00000000187/1-864 ---------- LQQVSRPTFF ARKFESTVNQ EVLEILDFHL YGSYPPGTPA 651 700 ENSP00000017003/1-865 LKAYWENTYD AADGPSGLSD VMLTAYTAFA RLSLHHAATA APPMGTPLCR ENSBTAP00000012247/1-867 LKAYWENTYD VADGPSGLSD VMLTAYTAFA RLSLRHITTA ASPLANPLCR bmy_06721T0/1-681 LKAYWENTYD VADGPSELSD VMLTAYTAFA RLSLRHAATA ASPLANPLCR BACU006429/1-758 LKAYWENTYD VADGPSGLSD VMLTAYTAFA RLSLRHAATA ASPQANPLCR ENSTTRP00000000187/1-864 LKAYWESTYD VADGPSGLSD VMLTAYTAFA RLSLRHAATA ASPLANPLCR 701 750 ENSP00000017003/1-865 FEPRGLPSSV HLYFYDDHFQ GYLVTQAVQP SAQGPAETLE MWLMPQGSLK ENSBTAP00000012247/1-867 FEPRGLPSSV HLYFYDDHFQ GYLVTQAVQS SAQGPAETLE MWLMPQGSLK bmy_06721T0/1-681 FEPRGLPSSV HLYFYDDHFQ GYLVMQAVQP SAQGPAETLE MWLMPQGSLK BACU006429/1-758 FEPRGLPSSV HLYFYDDHFQ GYLVTQAVQP SAQGPAETLE MWLMPQGSLK ENSTTRP00000000187/1-864 FEPRGLPSSV HLYFYDDHFQ GYLVTQTVQP SAQGPAETLE MWLMPQGSLK 751 800 ENSP00000017003/1-865 LLGRSDQASR LQSLEV---G TDWDPKERLF RNFGGLLGPL DEPVAVQRWA ENSBTAP00000012247/1-867 LLGHSDQASR LQSLEVGQVG TEWDPKERLF RNFGGLLGPL DEPVAMQRWA bmy_06721T0/1-681 LLGRSDQASR LQSLEV---G Q--------- ---------- ---------- BACU006429/1-758 LLGRSDQASR LQSLEV---G TEWDPKERLF RNFGGLLGPL DEPVAMQRWA ENSTTRP00000000187/1-864 LLGRSDQASR LQSLEV---G TEWDPKERLF RNFGGLLGPL DEPVAMQRWA 801 850 ENSP00000017003/1-865 RGPNLTATVV WIDPTYVVAT SYDITVDTET EVTQYKPPLS RPLRPGPWTV ENSBTAP00000012247/1-867 RGPNLTVTVV WIDPTYVVAT SYDIVVDAET EVTQYKPPLS RPLRPGAWTV bmy_06721T0/1-681 ---------- ---------- ---------- ---------- ---------- BACU006429/1-758 RGPNLTATVV WIDPTYVVAA SYDIVVDAET EVTQYKPPLS RPLRPGAWTV ENSTTRP00000000187/1-864 RGPNLTATVV WIDPTYVVAT SYDIVVDAET EVTQYKPPLS RPLRPGAWTV 851 900 ENSP00000017003/1-865 RLLQFWEPLG ETRFLVLPLT FNRKLPLRKD DASWLHAGPP HNEYMEQSFQ ENSBTAP00000012247/1-867 RLLQFWEPLG ETRFLVLPLT FNRKLPLRKG KFSQMIAGPP HNEYMEQSFQ bmy_06721T0/1-681 ---------- -----VLPL- ---------- ---------- ---------- BACU006429/1-758 RLLHFWEPLG ETRFLVLPLT FNRKLPLRKD DASWLHAGPP HNEYMEQSFQ ENSTTRP00000000187/1-864 RLLQFWEPLG ETRFLVLPLT FNRKLPLRKD DASWLHAGPP HNEYMEQSFQ 901 950 ENSP00000017003/1-865 GLSSILNLPQ PELAEEAAQR HTQLTGPALE AWTDRELSSF WSVAGLCAIG ENSBTAP00000012247/1-867 GLSGILNLPQ PEPAEEAARL HAELTGPALE AWTDGELSSF WSVAGVCAVG bmy_06721T0/1-681 ---------- ---------- ---------- ---------- ---------- BACU006429/1-758 GLSGILNLPQ PEPAEEAARL HAELTGPALE AWTDGELGGF WSVAGLCAMG ENSTTRP00000000187/1-864 GLSGILNLPQ PEPAEEAARL HAELTGPALE AWTDGELGGF WSVAGLCAMG 951 1000 ENSP00000017003/1-865 PSPCPSLEPC RLTSWSSLSP DPKSELGPVK ADGRLR ENSBTAP00000012247/1-867 PSACPSLELC RLTSWSSLSP DPKSELGPVK ADGRLR bmy_06721T0/1-681 ---------- -------LSP VPQQDSG--- ------ BACU006429/1-758 PSTCSSLELC RLTSWSSLFP DPKSELGPVK ADGRLR ENSTTRP00000000187/1-864 PSTCSSLELC RLTSWSSLFP DPKSELGPVK PDGRLR