KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:46:08 2014 Check: 00 .. Name: ENSBTAP00000012252/1-191 Len: 269 Check: 4561 Weight: 1.00 Name: ENSP00000292330/1-253 Len: 269 Check: 3246 Weight: 1.00 Name: ENSTTRP00000008417/1-254 Len: 269 Check: 4187 Weight: 1.00 Name: bmy_16106T0/1-266 Len: 269 Check: 604 Weight: 1.00 Name: BACU012080/1-166 Len: 269 Check: 1441 Weight: 1.00 // 1 50 ENSBTAP00000012252/1-191 -MMVYNGSQL ESVEEGEAVA VPGPPPEPRA PEPGAPVPEP GLDLSLSPR- ENSP00000292330/1-253 MMMGCGESEL KSADGEEAAA VPGPPPEPQV PQLRAPVPEP GLDLSLSPRP ENSTTRP00000008417/1-254 -MMGCEEPEL ESVEGGEAVA DPGPLPEPRA PVPGAPVPEP GLDLSLSLSP bmy_16106T0/1-266 -MMGCEESEL ESVEGGEAVA DPGPPPEPRA PEPGAPVPEP GLDLSLSPL- BACU012080/1-166 -MMGCEESEL ESVEGGEAVA DPGPPPEPRA PEPGAPVPEP GLDLSLSLSP 51 100 ENSBTAP00000012252/1-191 -SESPGRGRP NCSPGRRKGR ADRRGGARKG RQVRFLLAPP SPVRSGPPPA ENSP00000292330/1-253 DSPQPRHG-- --SPGRRKGR AERRGAARQR RQVRFRLTPP SPVRSEP--- ENSTTRP00000008417/1-254 LSESRAR--- NCSPGRRKGR ADRRGGARKR RQVRFRLAPP SPVRSEP--- bmy_16106T0/1-266 -SESPGRGRS NCSPGRRKGR ADRRGGARKG RQVRFRLAPP SPVRSEPPPA BACU012080/1-166 LSESPGRGRS NCSPGRRKGR ADRRGGARKG RQV------- ---------- 101 150 ENSBTAP00000012252/1-191 AASSSEKPEA PQDLGTPVQQ SSLALSLELQ AARAAAGGQF DAAKAVEEQL ENSP00000292330/1-253 ------QPAV PQELEMPVLK SSLALGLEL- --RAAAGSHF DAAKAVEEQL ENSTTRP00000008417/1-254 ------QLAA PQDLGTPAQQ SSLAQSFELQ AARAAAGGQF XXXXXXXXXX bmy_16106T0/1-266 AAAPSEKPAA PQDLGTPAQQ SSLALSFELQ AARAAAGGQF DAAKAVEEQL BACU012080/1-166 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000012252/1-191 RKSFQTRCGL EESVTEGEGG RR-------- -----PAGRG SGGARR---- ENSP00000292330/1-253 RKSFQIRCGL EESVSEGLNV PRSKRLFRDL VSLQVPEEQV LNAALREKLA ENSTTRP00000008417/1-254 XXXXXXXXXX XXXXXX-LNV PRSKRLFRDL VSLQVPEEQV LNAALREKLA bmy_16106T0/1-266 RKSFQTRCSL EESVAEGLNV PRSKRLFRDL VSLQVPEEQV LNAALREKLA BACU012080/1-166 ---------- ---------- ---------- -----PEEQV LNAALREKLA 201 250 ENSBTAP00000012252/1-191 ------RSPP P--------- ---------- ---------- ---------- ENSP00000292330/1-253 LLPPQARAPH PKEPPGPGPD MTILCDPETL FYESPHLTLD GLPPLRLQLR ENSTTRP00000008417/1-254 LLPPQARAPP P-EPSGPGPD MTILCDPETL FYESPHLTLE GLPPLRLQLR bmy_16106T0/1-266 LLPPQARAPP PKEPPGPGPD MTILCDPETL FYESPHLTLE GLPPLRLQLR BACU012080/1-166 LLPPQARAPP PKEPPGPGPD MTILCDPETL FYESPHLTLE GLPPLRLQLR 251 300 ENSBTAP00000012252/1-191 ---------- ---LMRSQG ENSP00000292330/1-253 PRPSEDTFLM HRTLRRWEA ENSTTRP00000008417/1-254 PRPSEDTFLM HRTLRRWEA bmy_16106T0/1-266 PRPSEDTFLM HRTLRRWEA BACU012080/1-166 PRPSEDTFLM HRTLRRWEA