KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:46:08 2014 Check: 00 .. Name: ENSP00000301305/1-647 Len: 707 Check: 5446 Weight: 1.00 Name: ENSBTAP00000012255/1-653 Len: 707 Check: 5130 Weight: 1.00 Name: ENSTTRP00000001822/1-656 Len: 707 Check: 1582 Weight: 1.00 Name: bmy_07562T0/1-700 Len: 707 Check: 1537 Weight: 1.00 Name: BACU001453/1-675 Len: 707 Check: 9975 Weight: 1.00 // 1 50 ENSP00000301305/1-647 ---------- ---------- ---------- ---------- ----MASLVS ENSBTAP00000012255/1-653 ---------- ---------- ---------- ---------- ----MALLGR ENSTTRP00000001822/1-656 ---------- ---------- ---------- ---------- ----LAGPAG bmy_07562T0/1-700 MPGEPRRGGR VPAQPESGTR QPMRPTATQA TMASLELRAP GGRSLVGLAG BACU001453/1-675 ---------- ---------- ---------- -MASLELRAP GGPSLVGPAG 51 100 ENSP00000301305/1-647 LELGLLLAVL VV---TATAS PPAGLLSLLT SGQGALDQEA LGGLLNTLAD ENSBTAP00000012255/1-653 PGLGPLLAVL AALAASGTTT RPVHLLTLLS SGQGALDRVA LGGLLNTLAA ENSTTRP00000001822/1-656 PKPGLLLALL AVLALTGTAT PPARLLTLLS SGRGVLDRKA LGSLLNTLAV bmy_07562T0/1-700 PKPGLLLAAL AALALTGTAT PPARLLTLLS SGQGVLDRMA LGSLLNTLAA BACU001453/1-675 PKPGLLLALL AALALTGTAT PPALLLTLLS SGQGVLDRTA LGSLLNTLAA 101 150 ENSP00000301305/1-647 RVHCANGPCG KCLSVEDALG LGEPEGSGLP PGPVLEARYV ARLSAAAVLY ENSBTAP00000012255/1-653 RVHCADGPCG KCLSVDDALA LGRPEQPGAP SGQVLEPRHI ARLSAAAALY ENSTTRP00000001822/1-656 RVHCADGPCG KCLSVEDALA LGRPEKPGLH SAQALEPRHI ARLSAAAALY bmy_07562T0/1-700 RVHCADGPCG KCLSVEDALA LGRPEKPGLR SGPALEPRHI ARLSAAAALY BACU001453/1-675 RVHCADGPCG KCLSVEDALA LGRPEKPGLR SGPALAPRHI ARLSAAAALY 151 200 ENSP00000301305/1-647 LSNPEGTCED ARAGLWASHA DHLLALLESP KALTPGLSWL LQRMQARAAG ENSBTAP00000012255/1-653 LSDPAGTCAE VRAGRWAARA DQLLVLLESS QALSVALTRL LQQIQARAAG ENSTTRP00000001822/1-656 LSNPEGTCAD VRAGRWASRA DQLLALLESP EALTPGLTRL LQKIQAQAAG bmy_07562T0/1-700 LSNPEGTCAD VRAGRWASRA NQLLALLESP EALTPGLTRL LQKIQAQAAG BACU001453/1-675 LSNPEGTCAD VRAGRWASRA DQLLALLESP EALTPGLTRL LQKIQAQAAG 201 250 ENSP00000301305/1-647 Q-TPKTACVD IPQLLEEAVG AGAPGSAGGV LAALLDHVRS GSCFHALPSP ENSBTAP00000012255/1-653 QPTSQQACVD LPQLLGEAAG IGAPGSPGPV LAALLGHVWS GACFHALPTP ENSTTRP00000001822/1-656 RPTSAEACVD LPQLLEEAAG VGSPGSPGPV LATLLDHVRS GSCFRALPTP bmy_07562T0/1-700 RPTSAEACVD LPQLLEEAAG VGSPGSPGPV LAALLDHVRN GSCFRALPTP BACU001453/1-675 RPTSAEACVD LPQLLEEAAG VGSPGSPGPV LAALLDHVRN GSCFRALPTP 251 300 ENSP00000301305/1-647 QYFVDFVFQQ HSSEVP-MTL AELSALMQRL GVG-----RE AHSDHSHRHR ENSBTAP00000012255/1-653 QYFVDFVFRQ HSSENPNITL DELAALMERL GLGGATEPHD SHSDDSPLGK ENSTTRP00000001822/1-656 QYFVDFVFRQ HSSENPNITL AELEALMQRL GVGGETETHG DHSDHGHRGE bmy_07562T0/1-700 QYFVDFVFRQ HSSENPNITL AELEALMQRL GVGGATETHG DHSDHGHLGE BACU001453/1-675 QYFVDFVFRQ HSSENPNITL DELEALMQRL GVGGATETHG DHSDHGHLGE 301 350 ENSP00000301305/1-647 GASSWDPVPL ISSSNSSSVW DTVCLSARDV MAAYGLSEQA GVTPEAWAQL ENSBTAP00000012255/1-653 G---QGPVPL AAPNSSASAW DTLCLSAQDI MAVYGMSEQA GVTPDDWARL ENSTTRP00000001822/1-656 GANRQGPVPP ATPNSSSSMW DTVCLSAGDV MAVYGLSEQA GVTPEAWAQL bmy_07562T0/1-700 GANRQGPVPL ATPNSSSSMW DTVCLSAGDV MAVYGLSEQA GVTPEAWAQL BACU001453/1-675 GANRQGPVPL ATPNSSSSMW DTVCLSAGDV MAVYGLSEQA GVTPEAWAQL 351 400 ENSP00000301305/1-647 SPALLQQQLS GACTSQSRPP VQDQLSQSER YLYGSLATLL ICLCAVFGLL ENSBTAP00000012255/1-653 SPALLQQQLS GACSPQPTLP TQDQLSQAER YLYGSLATLL ICLCSLLGLL ENSTTRP00000001822/1-656 SPALLQQQLS GACSPQPEQP TQDQLSQVQR YLYGSLATLL ICLSSVFGLL bmy_07562T0/1-700 SPALLQQQLS GACSPQPEQP TQDQLSQVER YLYGSLATLL ICLSSIFGLS BACU001453/1-675 SPALLQQQLS GACSPQPEQP TQDQLSQVER YLYGSLATLL ICLSSIFGLS 401 450 ENSP00000301305/1-647 LLTCTGCRGV THYILQTFLS LAVGALTGDA VLHLTPKVLG LHTHSEEGLS ENSBTAP00000012255/1-653 LLSCASCSTT SHYIIQAFLS MAVGALTGDA LLHLMPKVLG LHTHDGEDHG ENSTTRP00000001822/1-656 LLTCTKCSTA THYIIQTFLS MAVGALTGDA LLHLMPQVLG LHSHDGEGLG bmy_07562T0/1-700 LLTCAKCSTA THYIIQTFLS MAVGALTGDA LLHLTPQVLG LHSHDGEGLG BACU001453/1-675 LLTCAKCSTA THYIIQTFLS MAVGALTGDA LLHLTPQVLG LHSHDGEGLG 451 500 ENSP00000301305/1-647 PQPTWRLLAM LAGLYAFFLF ENLFNLLLPR DPEDLEDGPC GHSSHSHGGH ENSBTAP00000012255/1-653 FQPTWHLLAV LGGLYAFFLF ERLFNLLLPL DPEDPKDGAC SH-GHSHGGH ENSTTRP00000001822/1-656 SQPTWRLLAA LGGLYAFFLF ESLFNLLLPL DPEDRKDGPC SH-GHSHGGH bmy_07562T0/1-700 LQPTWRLLAV LGGLYAFFLF ESLFNLLLPL DPEDRKDGPC SH-GHSHGGH BACU001453/1-675 LQPTWRLLAA LGGLYAFFLF ESLFNLLLPL DPEDRKDGPC SH-GHSHGGH 501 550 ENSP00000301305/1-647 SHGVSLQLAP SELRQPKPPH EGSRADLVAE ESPELLNPE- ----PRRLSP ENSBTAP00000012255/1-653 SHGVSLQLAP SDFRQPKQLH EGSRADLVAE ESPELLSPE- ----PRRRSP ENSTTRP00000001822/1-656 SHGVSLQLAP SDLRPPKQPH EGSRADLXXX XXXXXXXXX- ----XXXXXX bmy_07562T0/1-700 SHGVSLQLAP SDLRPPKQPH EGSRADLVAE ESPELLSPE- ----PRRLSP BACU001453/1-675 SHGVSLQLAP SDLRPPKQPH EGSRADLVSW LWPDVPTPRG ALCPPTPAAP 551 600 ENSP00000301305/1-647 -ELRLLPYMI TLGDAVHNFA DGLAVGAAFA SSWKTGLATS LAVFCHELPH ENSBTAP00000012255/1-653 -GLRLLPYVI TLGDAVHNFA DGLAVGAAFL SSWKTGLATS LAVFCHEVPH ENSTTRP00000001822/1-656 -XXXXXXXXX XXXXAVHNFA DGLAVGAAFS SSWKTGLSTS LAVFCHEVPH bmy_07562T0/1-700 -ELRLLPYVI TLGDAVHNFA DGLAVGAAFS SSWKTGLATS LAVFCHEVPH BACU001453/1-675 AELRLLPYVI TLGDAVHNFA DGLAVGAAFS SSWKTGLATS LAVFCHEVPH 601 650 ENSP00000301305/1-647 ELGDFAALLH AGLSVRQALL LNLASALTAF AGLYVALAVG VSEESEAWIL ENSBTAP00000012255/1-653 ELGDFAALLH AGLSVRRALL LNVASALTAF IGLYVALAAG VGEDGETWIL ENSTTRP00000001822/1-656 ELGDFAALLH AGLSVRLALL LNLASGLTAF IGLYVALAVG VGEDGETWIL bmy_07562T0/1-700 ELGDFAALLH AGLSVRRALL LNLASGLTAF IGLYVALAVR VGEDGETWIL BACU001453/1-675 ELGDFAALLH AGLSVRRALL LNLASGLTAF IGLYVALAVR VGEDGETWIL 651 700 ENSP00000301305/1-647 AVATGLFLYV ALCDMLPAML KVRDPRPWLL FLLHNVGLLG GWTVLLLLSL ENSBTAP00000012255/1-653 AVAAGLFLYV ALCDMLPAML NVRDRRPWLL FLLHNVGLLG GWTVLLLLSL ENSTTRP00000001822/1-656 AVATGLFLYV ALCDMLPAML NVRDRRPWLL FLLHNVGLLG GWTVLLLLSL bmy_07562T0/1-700 AVATGLFLYV ALCDMLPAML NVRDRRPWLL FLLHNVGLLG GWTVLLLLSL BACU001453/1-675 AVATGLFLYV ALCDMLPAML NVRDRRPWLL FLLHNVGLLG GWTVLLLLSL 701 750 ENSP00000301305/1-647 YEDDITF ENSBTAP00000012255/1-653 YEDNIAF ENSTTRP00000001822/1-656 YEDNITL bmy_07562T0/1-700 YEDNITL BACU001453/1-675 YEDNITL