KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:46:09 2014 Check: 00 .. Name: ENSBTAP00000012262/1-376 Len: 384 Check: 3485 Weight: 1.00 Name: ENSP00000288774/1-346 Len: 384 Check: 2063 Weight: 1.00 Name: ENSTTRP00000003526/1-343 Len: 384 Check: 9143 Weight: 1.00 Name: bmy_22293T0/1-326 Len: 384 Check: 9663 Weight: 1.00 Name: BACU001154/1-296 Len: 384 Check: 8279 Weight: 1.00 // 1 50 ENSBTAP00000012262/1-376 MASAVASPPE VVRAAQKDDY YRGGLRSAAG GALHNLAGAK KWLEWRREVE ENSP00000288774/1-346 MAPAAASPPE VIRAAQKDEY YRGGLRSAAG GALHSLAGAR KWLEWRKEVE ENSTTRP00000003526/1-343 MAPAAASPPE VVRAAQKDDY YRGGLRSAAG GTLHSLAGAK KWLEWRREIE bmy_22293T0/1-326 MAPAAASPPE VVRAAQKDDY YRGGLRSAAG GALHSLAGAK KWLEWRREIE BACU001154/1-296 ---------- ---------- ---------- MTWFLLSGAK KWLEWRREIE 51 100 ENSBTAP00000012262/1-376 LVSDLAYFGL TTLAGYQTLG EEYVSVVQVG PSQRHVPSRL RRGILVALHT ENSP00000288774/1-346 LLSDVAYFGL TTLAGYQTLG EEYVSIIQVD PSRIHVPSSL RRGVLVTLHA ENSTTRP00000003526/1-343 LVSDVAYFGL TTLAGYQTLG EEYVSILQVD PTQGRVPSRL RRGILVALHT bmy_22293T0/1-326 LVSDVAYFGL TTLAGYQTLG EEYVGIVQVD PTQGRVPSRL RRGVLVALHT BACU001154/1-296 LVSDVAYFGL TTLAGYQTLG EEYVSIVQVD PTQGRVPSRL RRGVLVALHT 101 150 ENSBTAP00000012262/1-376 VLPYLLDKAL LHLEHELQAT GDGTWPLRGS LAPSS--QSG MRRWVHRCTA ENSP00000288774/1-346 VLPYLLDKAL LPLEQELQAD PDSGRPLQGS LGPGGRGCSG ARRWMRHHTA ENSTTRP00000003526/1-343 VLPYLLDKAL LHLEHELQAD GDGTWPSRGS LAPGARGQSG TRRWMRRCTA bmy_22293T0/1-326 VLPYLLDKAL LHLEHELQAD GDGAWPSRGS QAPGARGQSG ARRWVRRCAA BACU001154/1-296 VLPYLLDKAL LHLEHELQAD GDGAWPSRGS LAPGARGPSG ARRWVRRCTA 151 200 ENSBTAP00000012262/1-376 GLTEQQQGVL LRAVSALKQG LGCLQRLHVA WFYIHGAFYH LAKRFTGITY ENSP00000288774/1-346 TLTEQQRRAL LRAVFVLRQG LACLQRLHVA WFYIHGVFYH LAKRLTGITY ENSTTRP00000003526/1-343 ALTEQQQGTL LRAVLVFRQG LGCLQRLHVA WFYIHGAFYH LAKRFTGITY bmy_22293T0/1-326 ALTEQQQGAL LRAVLVLRQG LGCLQRLHVA WFYIHGAFYH LAKRFTGITY BACU001154/1-296 ALTEQQQGTL LRAVLVLRQG LGCLQRLHVA WFYIHGAFYH LAKRFTGITY 201 250 ENSBTAP00000012262/1-376 EPCRGK--SS FQKPTVHAVL GGTQAFDGHT LRPPV---LL GVYNPLERHQ ENSP00000288774/1-346 QALRPDPLRV LMSVAPSALQ LRVRSLPGED LRARVSYRLL GVISLLHLVL ENSTTRP00000003526/1-343 QCLTP---RI MTVPPSPGPQ LRVRHPLAED PRARASYRLL GLVSLLHLAL bmy_22293T0/1-326 ---------- ---------- LHVRHPLTED PRARASYRLL GLVSLLHLAL BACU001154/1-296 ---------- ---------- LRVRHPLAED PRARASYRLL GLVSLLHLVL 251 300 ENSBTAP00000012262/1-376 DGVSPLQGEV PPPEAGLPAA LPLTPCWKSS LILVDFSCTD IKKASRLLSR ENSP00000288774/1-346 SMGLQLY--- -----GFRQR QRARKEWRLH RGLSHRRASL EERA---VSR ENSTTRP00000003526/1-343 AAGMQLY--- -----GFRQR QRAQREWRXX XXXXXXXXXX XERA---VSR bmy_22293T0/1-326 AAGLQLY--- -----GFRQR QRAQREWRPQ RGLSHHRSYA EERA---VSR BACU001154/1-296 AAGLQLY--- -----GFRQR QRAQREWRPQ RGLSHRRSYA EERA---VSR 301 350 ENSBTAP00000012262/1-376 VIPCQLPGGW APDLDLDLAN AGLQGRLGGD LLGGQSTLRT PLPSPNQSLT ENSP00000288774/1-346 NPLCTL---- ---------- -CLEER---- --------RH PTATPCGHLF ENSTTRP00000003526/1-343 TSLCTL---- ---------- -CLEER---- --------RY STATPCGHLF bmy_22293T0/1-326 TSLCTL---- ---------- -CLEER---- --------RC STATPCGHLF BACU001154/1-296 TSLCTL---- ---------- -CLEER---- --------RY STATPCGHLF 351 400 ENSBTAP00000012262/1-376 GRG-LTDLEP STSSLLSQHD NPAAQKTHRL HPCP ENSP00000288774/1-346 CWECITAWCS SKAECPLCRE KFPPQKLIYL RHYR ENSTTRP00000003526/1-343 CWGCITHWAD TKMECPLCRE KFLPQKLVYL RHYR bmy_22293T0/1-326 CWGCITHWAD TKMECPLCRE KFLPQKLVYL RHYR BACU001154/1-296 CWGCITHWAD TKMECPLCRE KFLPQKLVYL RHYR