KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:46:10 2014 Check: 00 .. Name: ENSP00000376458/1-1287 Len: 1330 Check: 9233 Weight: 1.00 Name: ENSBTAP00000012270/1-1247 Len: 1330 Check: 5265 Weight: 1.00 Name: ENSTTRP00000011563/1-1273 Len: 1330 Check: 5628 Weight: 1.00 Name: BACU010192/1-1216 Len: 1330 Check: 4444 Weight: 1.00 Name: bmy_08500T0/1-1091 Len: 1330 Check: 8096 Weight: 1.00 // 1 50 ENSP00000376458/1-1287 MHPDLGPLCT LLYVTLTILC SSVSSDLAPY FTSEPLSAVQ KLGGPVVLHC ENSBTAP00000012270/1-1247 MHPDSRPLQT LLYVTLLMLC ASVSPDLAPY FVSEPLSAVQ KLGGPVVLHC ENSTTRP00000011563/1-1273 MHPVAGPLQT LLYVTLPILC SSVSPDLAPY FISEPLSAVQ KLGGPVVLHC BACU010192/1-1216 ---------- ---------- ---------- ---------- ---------- bmy_08500T0/1-1091 MHPVAGPLQT LLYVTLPILC SSMSPDLAPY FISEPLSAIQ KLGGPVVLHC 51 100 ENSP00000376458/1-1287 SAQPVTTRIS WLHNGKTLDG NLEHVKIHQG TLTILSLNSS LLGYYQCLAN ENSBTAP00000012270/1-1247 SAKPVTARIS WLHNGKRLDR NVEQIKVHQG TLTILSLNPS LSGHYQCVAN ENSTTRP00000011563/1-1273 SAKPVTARIS WLHNGKRLDR NVEQIKVHQG TLTILSLNPS LSGYYQCIAN BACU010192/1-1216 -----MAR-- ---------- ---------- ---------- ------CIAN bmy_08500T0/1-1091 SAKPVTARIS WLHNGKRLDR NVEQIEVHQG RLTILSLNPS LSGYYQCIAN 101 150 ENSP00000376458/1-1287 NSIGAIVSGP ATVSVAVLGD FGSSTKHVIT AEEKSAGFIG CRVPESNPKA ENSBTAP00000012270/1-1247 NSIGAILSGP ATVSTAVLGD FGASGKHVIT AEEKSTGFIA CRVPDSNPKA ENSTTRP00000011563/1-1273 NSIGAVVSGP ATISTAVLGD FGSSTKHVIT AEEKSTGFIG CKVPDSNPKA BACU010192/1-1216 NSIGAIVSGP ATISAAVLGD FGSSTKHVIT AEEKSTGFIG CKVPDSNPKA bmy_08500T0/1-1091 NSIGAIVSGP ATISTAVLGD FGSSTKHVIT AEEKSTGFIG CKVPDSNPKA 151 200 ENSP00000376458/1-1287 EVRYKIRGKW LEHSTENYLI LPSGNLQILN VSLEDKGSYK CAAYNPVTHQ ENSBTAP00000012270/1-1247 EVRYKIRGKW LKQSTENYLI LPSGNLQILN VSLEDKGSYK CAAFNPVTHE ENSTTRP00000011563/1-1273 EVRYKIRGKW LKHSTENYLI LPSGNLQILN VSLEDKGSYK CAAFNPVTHE BACU010192/1-1216 EVRYKIRGKW LKHSTENYLI LPSGNLQILN VSLEDKGSYK CAAFNPVTHE bmy_08500T0/1-1091 EVRYKIRGKW LKHSTENYLI LPSGNLHILN VSLEDKGSYK CAAFNPVTHE 201 250 ENSP00000376458/1-1287 LKVEPIGRKL LVSRPSSDDV HILHPTHSQA LAVLSRSPVT LECVVSGVPA ENSBTAP00000012270/1-1247 LKVEPIGQKL LVSRPSSGDF HILHPTFSQA LAVLSRSPVT LECVVSGVPA ENSTTRP00000011563/1-1273 LKVEPIGQKL LVSRPSSDDF HILHPALSQA LAVLSRSPVT LECVVSGIPA BACU010192/1-1216 LKVEPIGQKL LVSRPSSDDF HILHPTLSQA LAVLSRSPVT LECVVSGIPA bmy_08500T0/1-1091 LKVEPIGQKL LVSRPSSDDF HILHPTLSQA LAVLSRSPVT LECVVSGIPA 251 300 ENSP00000376458/1-1287 PQVYWLKDGQ DIAPGSNWRR LYSHLATDSV DPADSGNYSC MAGNKSGDVK ENSBTAP00000012270/1-1247 SHVRWLKGGQ DAVVGSTWRR LYTHLATDSI DPADSGNYSC VVGNKAGDAK ENSTTRP00000011563/1-1273 SHVHWLKDGQ DAVPGSKWRR LYSHLATDSI DPADSGNYSC VVGNKSGDTK BACU010192/1-1216 SHVRWLKDGE DAVLGSKWRR LHSHLATDSI DPADSGNYSC VVGNKSGDTK bmy_08500T0/1-1091 SHVHWLKDGQ DAVPGSKWRR LHSHLATDSI DPADSGNYSC VVGNKSGDTK 301 350 ENSP00000376458/1-1287 YVTYMVNVLE HASISKGLQD QIVSLGATVH FTCDVHGNPA PNCTWFHNAQ ENSBTAP00000012270/1-1247 HVTYMVNVLE HASISKGLQD QTVSLGATVQ FTCEVHGNPA PNRTWFHNAQ ENSTTRP00000011563/1-1273 HVTYVVNVLE HASISKGLQD QTVSLGATVQ FTCEVHGNPT PNRTWFHNAR BACU010192/1-1216 HVTYVVNVL- ------GLQD QTVSLGATVQ FMCEVHGNPT PNRTWFHNAQ bmy_08500T0/1-1091 HVTYVVNVL- ---------- ---------- ----VHGNPT PNRTWFHNAR 351 400 ENSP00000376458/1-1287 PIHPSARHLT AGNGLKISGV TVEDVGMYQC VADNGIGFMH STGRLEIEND ENSBTAP00000012270/1-1247 PIRPSPRHLT VGNGLKISGV TMEDSGLYQC VADNGIGFTQ STGRLEIEKG ENSTTRP00000011563/1-1273 PIRRSPRHLT VGNGLKIRGV TMEDSGLYQC VADNGIGFTQ STGRLEIEND BACU010192/1-1216 PIRRSPRHLT VGNGLKIRGV TMEDSGLYQC VADNGIGFMQ STGRLEIEND bmy_08500T0/1-1091 PIRRSPRHLT VGNGLKIRGV TMEDSGLYQC VADNGIGFMQ STGRLEIENX 401 450 ENSP00000376458/1-1287 GGFKPVIITA PVSAKVADGD FVTLSCNASG LPVPVIRWYD SHGLITSHPS ENSBTAP00000012270/1-1247 SGLKPIITRS PASAEVAVGD SVTLSCNATG LPVPAIHWYD KRGLITSHLS ENSTTRP00000011563/1-1273 SGLKPVIITA PASAEVASGG SVTFSCNATG VPVPAIRWYD RHGLITSHLS BACU010192/1-1216 SGLKPVIITA PASAEVASGG SVTLSCNATG VPVPAIRWYD RHGLITSHLS bmy_08500T0/1-1091 SGLKPVIITA PASAEVASGR SVTLSCSATG VPVPAIRWYD RHGLITSHLS 451 500 ENSP00000376458/1-1287 QVLRSKSRKS QLSRPEGLNL EPVYFVLSQA GASSLHIQAV TQEHAGKYIC ENSBTAP00000012270/1-1247 QALRSKSRKP HLLRPGSSDP EPV---TSRA GSGSLYIQAV RREHAGKYTC ENSTTRP00000011563/1-1273 QVLRSKSRKP HLSRPGGSDL EPVYFIMSQA GSSSLYIQAV TREHAGKYTC BACU010192/1-1216 QVLRSKSRKP HLSRPGGSDL EPVYFIMSQA GSSSLYIQAV TREHAGKYTC bmy_08500T0/1-1091 QVLRSKSRKP HLSRPGSSDL EPVYFIMSQA GSSSLYIQAV TREHAGKYTC 501 550 ENSP00000376458/1-1287 EAANEHGTTQ AEASLMVVPF ETNTKAETVT LPDAAQNDDR SKRDGSETGL ENSBTAP00000012270/1-1247 EATNVHGTTR SEAILVVVPF ETDTKAEIVT SSDPTQND-- -KSDDSETGL ENSTTRP00000011563/1-1273 EAANAHGTTQ SEAVLAVVPF ETNTKAEIVT PSDPTQND-- -KSDGSETGL BACU010192/1-1216 EAANAHGTAQ SEAVLTVVPF ETNIKAEIVT PSDPTQND-- -KSDGSETGL bmy_08500T0/1-1091 EAANAHGTTQ SEAVLTVVPF ETNIKAEIVT PSDPTQND-- -KSDGSETXL 551 600 ENSP00000376458/1-1287 LSSFPVKVHP SAVESAPEKN ASGISVPDAP IILSPPQTHT PDTYNLVWRA ENSBTAP00000012270/1-1247 LSSFPVKEHS SAKESSSEKN ASGPSVPDAP IILSPPQTHT PDTYSLVWRA ENSTTRP00000011563/1-1273 LSSFPLKEHS RATESSSEKN ASGASVPDAP IILSPPQTHT PDTYNLIWRA BACU010192/1-1216 LSSFPLKEYS SATESSSEKN ASGTSVPDAP IILSPPQTHT PDTYNLVWRA bmy_08500T0/1-1091 LSSFPLKEHS SATESSSEKN AGGTSVPDAP IILSPPQTHT PDTYNLVWRA 601 650 ENSP00000376458/1-1287 GKDGGLPINA YFVKYRKLDD GVGMLGSWHT VRVPGSENEL HLAELEPSSL ENSBTAP00000012270/1-1247 GKDGGLPINA YFVKYRKLED GVGVVGSWHT VRVPGSENEL HLTELEPSSL ENSTTRP00000011563/1-1273 GKDGGLPINA YFVKYRKLEG GVGVVGRWHT VRVPGSENEL HLTELEPSSL BACU010192/1-1216 GKDGGLPINA YFVKYRKLED GVGVVGRWHT VRVPGSENEL HLTELEPSSL bmy_08500T0/1-1091 GKDGGLPINA YFVKYRKLED GVGVVGRWHT VRVPGSENEL HLTELEPSSL 651 700 ENSP00000376458/1-1287 YEVLMVARSA AGEGQPAMLT FRTSKEKTAS SKNTQASSPP VGIPKYPVVS ENSBTAP00000012270/1-1247 YEVLMVARSA AGEGQPAMLT FRTSKEKTAS SKNTQASSPP VGIPKRPVVS ENSTTRP00000011563/1-1273 YEVLMVARSA AGEGQPAMLT FRTSKEKTTS SKNTQVSSPP VGIPKRPVVS BACU010192/1-1216 YEVLMVARSA AGEGQPAMLT FRTSKEKTTS SKNTQASSPP VGIPKRPVVS bmy_08500T0/1-1091 YEVLMVARSA AGEGQPAMLT FRTSKEKTTS SKNTQASSPP VGIPKRPVVS 701 750 ENSP00000376458/1-1287 EAANNNFGVV LTDSSRHSGV PEAPDRPTIS TASETSVYVT WIPRANGGSP ENSBTAP00000012270/1-1247 EAA-DNFGVV LTDASRHSGV PEAPDRPTIS TASETSVYVT WIPRANGGSP ENSTTRP00000011563/1-1273 EAA-DNFGVI LTDPSRHSGV PEAPDRPTIS TASETSVYVT WIPRANGGSP BACU010192/1-1216 EAA-DNFGVI LTDPSRHSGV PEAPDRPTIS TASETSVYVT WIPRANGGSP bmy_08500T0/1-1091 EAA-DNFGVI LTDPSRHSGV PEAPDRPTIS TASETSVYVT WIPRANGGSP 751 800 ENSP00000376458/1-1287 ITAFKVEYKR MRTSNWLVAA EDIPPSKLSV EVRSLEPGST YKFRVIAINH ENSBTAP00000012270/1-1247 ITAFKVEYKR MRTSDWLVAA EDIPPSKLSV EVRSLEPGST YKFRVIAINH ENSTTRP00000011563/1-1273 ITAFKVEYKR MRTSDWLVAA EDIPPSKLSV EVRSLEPGST YKFRVIAVNH BACU010192/1-1216 ITAFKVEYKR MRTSDWLVAA EDIPPSKLSV EVRSLEPGST YKFRVIAINH bmy_08500T0/1-1091 ITAFKVEYKR MRTSDWLVAA EDIPPSKLSV EVRSLEPGST YKFRVIAINH 801 850 ENSP00000376458/1-1287 YGESFRSSAS RPYQVVGFPN RFSSRPITGP HIAYTEAVSD TQIMLKWTYI ENSBTAP00000012270/1-1247 YGESFRSSAS RPYQVAGFPN RFSNRPITGP HIAYTEAVSD TQIMLKWTYI ENSTTRP00000011563/1-1273 YGESFRSSAS RPYQVAGFPN RFSNRPITGP HIAYTEAVSD TQIMLKWTYI BACU010192/1-1216 YGESFRSSAS RPYQVAGFPN RFSNRPITGP HIAYTEAVSD TQIMLKWTYI bmy_08500T0/1-1091 YGESFRSSAS RPYQVAGFPN RFSNRPITGP HIAYTEAVSD TQIMLKWTYI 851 900 ENSP00000376458/1-1287 PSSNNNTPIQ GFYIYYRPTD SDNDSDYKRD VVEGSKQWHM IGHLQPETSY ENSBTAP00000012270/1-1247 PSSNNNTPIQ GFYIYYRPTD SDNDSDYKRD IVEGSKQWHM IGHLQPETSY ENSTTRP00000011563/1-1273 PSSNNNTPIQ GFYIYYRPTD SDNDSDYKRD IVEGSKQWHM IGHLQPETSY BACU010192/1-1216 PSSNNNTPIQ GFYIYYRPTD SDNDSDYKRD IVEGSKQWHT IGHLQPETSY bmy_08500T0/1-1091 PSSNNNTPIQ GFYIYYRPTD SDNDSDYKRD IVEGSKQWHM IGHLQPETSY 901 950 ENSP00000376458/1-1287 DIKMQCFNEG GESEFSNVMI CETKVKRVPG ASEYPVKDLS TPPNSLGSGG ENSBTAP00000012270/1-1247 DIKMQCFNEG GESEFSNVMI CETKVKRVPG ASEYPIKDLS TPPNSSGSGG ENSTTRP00000011563/1-1273 DIKMQCFNEG GESEFSNVMI CETKVKRVPG ASEYPVKDLS TPPNSSGSGG BACU010192/1-1216 DIKMQCFNEG GESEFSNVMI CETKVKRVPG ASEYPVKDLS TPPNSSGSGG bmy_08500T0/1-1091 DIKMQCFNEG GESEFSNVMI CETKVKRVPG ASEYPVKDLS TPPNSSGSGG 951 1000 ENSP00000376458/1-1287 NVGPATSPAR SSDMLYLIVG CVLGVMVLIL MVFIAMCLWK NRQQNTIQKY ENSBTAP00000012270/1-1247 NVGPAASPTR SSDMLYLIVG CVLGVMVLIL MAFIAMCLWK NRQQSTIQKY ENSTTRP00000011563/1-1273 NAGPASSPAR SSDMLYLIVG CVLGVMVLIL MAFIAMCLWK NRQQNPIQKY BACU010192/1-1216 NAGPATSPAR SSDMLYLIVG CVLGVMVLIL MAFIAMCLWK NRQQNPIQKY bmy_08500T0/1-1091 NAGPATSPAR SSDMLYLIVG CVLGVMVLIL MAFIAMCLWK NRQQNPIQKY 1001 1050 ENSP00000376458/1-1287 DPPGYLYQGS DMNGQMVDYT TLSGASQING NVHGGFLTNG GLSSGYSHLH ENSBTAP00000012270/1-1247 DPPGYLYQGS DVNGQMVEYT TLPGTNRING SVHGSF---- --SNGCSHLH ENSTTRP00000011563/1-1273 DPPGYLYQGS DVTGQMVEYT TLPGTSQINR NVHGSF---- --SNGCSHLH BACU010192/1-1216 DPPGYLYQGS DVTGQMVEYT TLPGTNRINR NVHGSF---- --SNGCSHLH bmy_08500T0/1-1091 DPPGYLYQGS DVTGQMVEYT TLPGTNRINR NVHGSF---- --SNGCSHLH 1051 1100 ENSP00000376458/1-1287 HKVPNAVNGI VNGSLNGGLY SGHSNSLTRT HVDFEHPHHL VNGGGMYTAV ENSBTAP00000012270/1-1247 HKVPNG---- VSGSLNGGLY PGHVSSLTRT RVDFEHPRRL VNGGGLYTAV ENSTTRP00000011563/1-1273 HKLPSG---- VSGSLNGGLY SGRTSSLTRT RVDFEHPRHL VNXXXXXXXX BACU010192/1-1216 HKLPNG---- VSGSLSGGLY SGRTSSLTRT CVDLEHPRHL VNGGGLYTAV bmy_08500T0/1-1091 HKLPNG---- VSRSLNGGLY SGRTSSLTRT RVDLEHPRHL VNGGGLYTAV 1101 1150 ENSP00000376458/1-1287 PQIDPLECVN CRNCRNNNRC FTKTNSTFSS SPPPVVPVVA PYPQDGLEMK ENSBTAP00000012270/1-1247 PPADPMECIN CRNCRNNNRC FTKTSSTFSS SPLPVVPVIA PYPQDGLEMK ENSTTRP00000011563/1-1273 XXXXXXXXXX XXXXXXXXXC FTKTNSTFSS SPLPVVPVVA PYPQDGLEMK BACU010192/1-1216 PQTDPMECIS CRNCRNNNRC FTKTSSTLGS SPLPVVPVVA PYPQDGLEMK bmy_08500T0/1-1091 PQTDPMECIS CRNCRNNNRY ---------- ---------- ---------- 1151 1200 ENSP00000376458/1-1287 PLSHVKVPVC LTSAVPDCGQ LPEESVKDNV EPVPTQRTCC QDIVNDVSSD ENSBTAP00000012270/1-1247 PFGHMKMPVC LASTVPDCVQ PPEEGIKEDE TPTPAQPICC QDSRDGASSD ENSTTRP00000011563/1-1273 PLIHMKMPVC LASTVPDCGQ SPEKGIKDDK ARRPAQHICC QDNRNETSSD BACU010192/1-1216 PLIHMKMPVC LASTVPDCGQ SPEEGIKDDK ARRPAQHICC QDKRNETNSD bmy_08500T0/1-1091 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000376458/1-1287 GSEDPAEFSR GQ-------- ---------- -EGMINLRIP DHLQLAKSCV ENSBTAP00000012270/1-1247 CVEDTAEFHR ---------- ---------- ---------- ---------- ENSTTRP00000011563/1-1273 CVEVAAEFNR GQ-------- ---------- -QDIINLKFL DSLQLTKNCI BACU010192/1-1216 CVEVAAEFNR EPAFELIWSC NLSSFRFSIL LSESIVVHSP DGTGPVLSCN bmy_08500T0/1-1091 -IDNIDDF-- ---------- ---------- ---------- ---------- 1251 1300 ENSP00000376458/1-1287 WEGDSCAHSE TEI--NIVSW NALILPPVPE GCAEKTMWSP PGIPLDSPTE ENSBTAP00000012270/1-1247 --GDSCVPSE AEN--NILSW NPLVLPPVSK DCTEKTLWCP PGTPVDSPPG ENSTTRP00000011563/1-1273 RKGDSCVPSE TEN--KILSW NPLILPPVSK DCAEKTPWSP PGIPVDSPSG BACU010192/1-1216 RNNPPLVRAS RVIYRGISQF TDLVWKQAAR SYSTRRCSRH RGSHLPSDSR bmy_08500T0/1-1091 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSP00000376458/1-1287 V--------- ---------- ---LQQPRET ENSBTAP00000012270/1-1247 V--------- ---------- ---LQQPQET ENSTTRP00000011563/1-1273 V--------- ---------- ---LQQSQET BACU010192/1-1216 LVFSPVVCLP RLSTSVFHKL GQDLSHNQVI bmy_08500T0/1-1091 ---------- ---------- ---ISH----