KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:46:11 2014 Check: 00 .. Name: ENSP00000373627/1-432 Len: 501 Check: 7985 Weight: 1.00 Name: ENSBTAP00000012280/1-432 Len: 501 Check: 7621 Weight: 1.00 Name: ENSTTRP00000001561/1-373 Len: 501 Check: 4524 Weight: 1.00 Name: bmy_00708T0/1-441 Len: 501 Check: 2508 Weight: 1.00 Name: BACU011971/1-368 Len: 501 Check: 6601 Weight: 1.00 // 1 50 ENSP00000373627/1-432 MAERTMAMPT QIPADGDTQK ENNIRCLTTI GHFGFECLPN QLVSRSIRQG ENSBTAP00000012280/1-432 MAEKPMCPST QIPDDEDTQK EDNIRCLNML GHFGFDCLAH QLVDKSVQQG ENSTTRP00000001561/1-373 MAEKPMRMST QIPDDEDIQK EDNIRCLTTL DHFGFDCLPQ QLVNKSVQQG bmy_00708T0/1-441 ---------- ---------- ---------- ---------- --MNKSIQQG BACU011971/1-368 ---------- --MILFGKQK EDNIRCLTLL GHFGFDCLPH QLMNKSVQQG 51 100 ENSP00000373627/1-432 FTFNILCV-- ---------- ---------- ---------- ---------- ENSBTAP00000012280/1-432 FFFNILCV-- ---------- ---------- ---------- ---------- ENSTTRP00000001561/1-373 FFFNILCV-- ---------- ---------- ---------- ---------- bmy_00708T0/1-441 FFFNILCVVP NPSHELFLNF PKCSFQLILS SITLRVRVLL LLRHLMSLCC BACU011971/1-368 FFFNILCV-- ---------- ---------- ---------- ---------- 101 150 ENSP00000373627/1-432 -----GETGI GKSTLIDTLF NTNLKDNKSS HFYSNVGLQI QTYELQESNV ENSBTAP00000012280/1-432 -----GETGI GKSTLIDTLF NTSLKDKKSS HFYASVGLKI QTYELQENNV ENSTTRP00000001561/1-373 -----GETGI GKSTLIDTLF NTNLKDKKSS HFCPNVGLKI QTYELQESNI bmy_00708T0/1-441 IYVYTGETGI GKSTLIDTLF NTNLKDKKSS HFYPNVGLKI QTYELQESNI BACU011971/1-368 -----GETGI GKSTLIDTLF NTNLKDKKSS HFYPNVGLKI QTYELQESNI 151 200 ENSP00000373627/1-432 QLKLTVVETV GYGDQIDKEA SYQPIVDYID AQFEAYLQEE LKIKRSLFEY ENSBTAP00000012280/1-432 QLKLTVVKTV GYGDQINKEA SYQPIVDYLD AQFESYLQEE LKIKRSLGNY ENSTTRP00000001561/1-373 QLNLTVVETV GYGDQINKEG SYQLIGDYID AQFESYLQEE LKIKRSFVDY bmy_00708T0/1-441 QFNLTVVKTV GYGDQINKEA SYQPIVDYID AQFESYLQEE LKIKRSFVDY BACU011971/1-368 QLNLTVVKTV GYGDQINKEA SYQPIVDYID AQFESYLQEE LKIKRSFVDY 201 250 ENSP00000373627/1-432 HDSRVHVCLY FISPTGHSLK SLDLLTMKNL DSKVNIIPLI AKADTISKND ENSBTAP00000012280/1-432 RDSRVHVCLY FISPTGHSLK SLDILTMKNI DSKVNIIPVI AKADAISKSD ENSTTRP00000001561/1-373 HDSRIHVCLY FISPTGHSLK PLDLLTMKNI DSKVNIIPLI AKADTISKND bmy_00708T0/1-441 HDSRIHVCLY FISPTGHSLK SLDLLTMKNI XSKVNIIPLI AKADTISKND BACU011971/1-368 HDSRIHVCLY FISPTGHSLK SLDLLTMKNI DSKVNIIPLI AKADTISKND 251 300 ENSP00000373627/1-432 LQTFKNKIMS ELISNGIQIY QLPTDEETAA QANSSVSGLL PFAVVGSTDE ENSBTAP00000012280/1-432 LQTFKCAIMN ELISNGIQMY QFPTDNETST HMNSSMNGLL PFAVVGSTEE ENSTTRP00000001561/1-373 LQKFKCKIMS ELISNGIQIY QFPTDDEATM DVDTSMNXXX XXXXXXXXXX bmy_00708T0/1-441 LQKFKCKIMS ELISNGIQIY QLPTDDEATT HVNTSMNELL PFAVVGSMDE BACU011971/1-368 LQKFKCKIMS ELISNGIQIY QLPTDDEATT HVNTSMNGLL PFAIVGSMDE 301 350 ENSP00000373627/1-432 VKVGKRMVRG RHYPWGVLQV ENENHCDFVK LRDMLLCTNM ENLKEKTHTQ ENSBTAP00000012280/1-432 VKVGKRTVRG RQYPWGILQV ENENHCDFVK LRDMLLCTNM EDLKEQTHTR ENSTTRP00000001561/1-373 XXXXXXXXXX XXXXXXXXXX ENENHCDFVK LRDVLFCTNM EDLKEQTHTW bmy_00708T0/1-441 VKVGKRMVRG RQYPWGVLQV ENEDHCDXVK LRDVLLYTNM EDLKEQTHTW BACU011971/1-368 VKVGKRMVRG RQYPWGVLQV ENEDHCDFVK LRDVLLYTNM EDLKEQTHTW 351 400 ENSP00000373627/1-432 HYECYRYQKL QKMGFTDVGP NNQPVSFQ-- ---------- ---------- ENSBTAP00000012280/1-432 HYERYRRNRL HMMGFTDMGP NNQPVSFQ-- ---------- ---------- ENSTTRP00000001561/1-373 HYERYRCSKL QKMGFTDVDP DNQPVSFQ-- ---------- ---------- bmy_00708T0/1-441 HYERYRCSKL QKMGFTDVGP DNQPVRLRWR VSRSNIMQGL IYMHPICVCA BACU011971/1-368 HYERYRCSKL QKMGFTDVGP DNQPVSFQ-- ---------- ---------- 401 450 ENSP00000373627/1-432 EIFEAKRQEF YDQCQREEEE LKQRFMQRVK EKEATFKEAE KELQDKFEHL ENSBTAP00000012280/1-432 EIYEAKRQEL LEQCQREEEE LKHKFMQRVK EKETAFKEAE KELQDKFEHL ENSTTRP00000001561/1-373 EIYEAKRQDF LDQCQREEEK ---------- ---------- --LKQKF--V bmy_00708T0/1-441 EMCIQKKKYI LYGTEAQERD LQ---ILRAL SHNCRFVSQ- --LQDKFEHL BACU011971/1-368 EIYEAKRQEF LDQCQREEEE ---------- ---------- --LKQRF--M 451 500 ENSP00000373627/1-432 KMIQQEEIRK LEEEKKQLEG EIIDFYKMKA ASEALQTQLS TDTKKDKHRK ENSBTAP00000012280/1-432 KKVQQEETMR LEEERRQLEE EILELCKMKA SSGTLQSQVC TSVKKDKERK ENSTTRP00000001561/1-373 QRVKQRETAF KEAEKE---- ---------- ---------- ---------- bmy_00708T0/1-441 KRVQQEETMK LEEERRQLEE EIIDFYKMKA ASGTLQTQG- ---------- BACU011971/1-368 QRVKQKETAF KEAEKEASPA SLI------- ---------- ---------- 501 550 ENSP00000373627/1-432 K ENSBTAP00000012280/1-432 K ENSTTRP00000001561/1-373 - bmy_00708T0/1-441 - BACU011971/1-368 -