KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:46:14 2014 Check: 00 .. Name: ENSBTAP00000012295/1-1106 Len: 1195 Check: 7025 Weight: 1.00 Name: ENSTTRP00000003195/1-1097 Len: 1195 Check: 6422 Weight: 1.00 Name: bmy_04449T0/1-606 Len: 1195 Check: 5024 Weight: 1.00 Name: BACU014103/1-1082 Len: 1195 Check: 4576 Weight: 1.00 // 1 50 ENSBTAP00000012295/1-1106 ---------- LYSQVHMETT MSRPVLSPTR INATASETFT VLQQRMRIVE ENSTTRP00000003195/1-1097 ---------- TDCGVHMETT MSRPVLCPAC INATASETFM VLQQRMRIVE bmy_04449T0/1-606 ---------- ---------- ---------- -----MAAFA LVGSSIR--- BACU014103/1-1082 MGNSAKRTPQ DLRDVHMETT MSRPVLSPAR INATASETFT VLQQRMRIVE 51 100 ENSBTAP00000012295/1-1106 EQTSSLRDDL IMLDFGDKRG QLETPEC--- SVSQNITRPI QNEIICSGKT ENSTTRP00000003195/1-1097 EQTSSLRNDL IMLDFGEKRG HLQTPKCLEE PVSQNIISPI QNEIICSGKT bmy_04449T0/1-606 ---------- ---------- ---------- ---------- ---------- BACU014103/1-1082 EQTSSLRDDL IMLDFGEKRG HLETPKCLEE PVSQNIISPI QNEIICSGKT 101 150 ENSBTAP00000012295/1-1106 NILWKNCEFL VNRMCRLESL IQSLKMNIFR LQTEKDLNPQ KTDFLKERLN ENSTTRP00000003195/1-1097 DILWKNCEFL VNRMCRLESL IQSLKMNI-R LQTEKDLNPQ KTDFLKEKLN bmy_04449T0/1-606 ---------- ---------- ---------- ---------- ---------- BACU014103/1-1082 DILWKNCEFL VSRMCRLESL IQSLKMNIFH LQTEKDLNPQ KTDFLKERLN 151 200 ENSBTAP00000012295/1-1106 TIQEEHSKDL KLLQLEVMNL RQQLRDVKEE EDKAQDEVQR LTATLEIASE ENSTTRP00000003195/1-1097 TIQEEHSRDL KLLQLEVMNL RQQLRDVKEK EDKAQDEVQR LTVTLQLASE bmy_04449T0/1-606 ---------- ---------- ---------- ---------- ---------- BACU014103/1-1082 TIQEEHSKDL KLLQLEVMNL HQQLRDVKEK EDKVQDEVQG LTVTLQLASE 201 250 ENSBTAP00000012295/1-1106 TKKNAAIIEE ELKTTKRKMN LKIQELRRQL SQEKHLRESL EKSGSALLLR ENSTTRP00000003195/1-1097 TKKNAAIIEE ELKTTKCKMN LKIQELRRQL SQEKHLRESV EKPGSAMLLK bmy_04449T0/1-606 ---------- ---------- ---------- ---------- ---------- BACU014103/1-1082 TKKNAAVIEE ELKTTKRKMN LKIQELRRQL SQEKHLRESL EKSGSALLLK 251 300 ENSBTAP00000012295/1-1106 IQEMEATVEV ERKQVVQILQ ENCIALRSSI QTTQELLAQE QQQKGELETA ENSTTRP00000003195/1-1097 IQEMGSTVEV ERKQ-VQILQ QNCIALRISI QTNQELLAQE RQQKGELETT bmy_04449T0/1-606 ---------- ---------- ---------- ---------- --AKGS---- BACU014103/1-1082 IQEMGSTVEM ERKQ-VQILQ QNCIALCSSI QTTQELLAQE RQQKGGLETT 301 350 ENSBTAP00000012295/1-1106 SSQLKSDLVS RDDIISKLVE ENKNIQMSFN KEHEGNAYLR SEIVSLHEAS ENSTTRP00000003195/1-1097 TSQLKSDLVS RDDLISKLVE ENKNIQMSFN KEHEENAYLR SEIISLHEAS bmy_04449T0/1-606 ---------- ---------- ---------- ---------- ---------- BACU014103/1-1082 TSQLKSDLVS RDDLISKLVE ENKNIQISFN KEHEENAYLR SEIIFLHEAS 351 400 ENSBTAP00000012295/1-1106 EKAQILNDQL TRKCSELSSM LQTVKMENTR IIADHQAILQ EEQKMMTQTF ENSTTRP00000003195/1-1097 EKAQVLNDQL TRKCSELNRM LQTVRMENTR IIADHQAILQ EEQKMMTQTF bmy_04449T0/1-606 ---------- ---------- ---------- ---------- ---------- BACU014103/1-1082 EKA------- ---------- ---------- ---------Q EEQKMMTQTF 401 450 ENSBTAP00000012295/1-1106 QEQNLLLDAA HASITSELQT VQNEKTQLQM HLDHLILEHN QCIQKAQEAE ENSTTRP00000003195/1-1097 QEQNLLLDAA HASITNELQT VQNEKTQLQM HLDHLILEYN QCIQKAQDAE bmy_04449T0/1-606 ---------- ---------- ---------- ---------- ---------- BACU014103/1-1082 QEQNLLLDAA HASITSELQT VQNEKTQLQM HLDHLFLEHN QCIQKAQDAE 451 500 ENSBTAP00000012295/1-1106 KRATVQKELL ESTIARLRGD LEASTQEKKS LLEEKDRLQK EVNKTEKEVA ENSTTRP00000003195/1-1097 KRAAVQKELL ESTIARLRSE LEASIQEKTS LLEEKEGLQR EVNKTEKEIA bmy_04449T0/1-606 ---------- ---------- ---------- ---------- ---------- BACU014103/1-1082 KRAAVQKELL ESTVARLRRE LEASMQEKTS LLQEKEGLQR EVNKTEKEIA 501 550 ENSBTAP00000012295/1-1106 EEKCNLEKEL AKNKVDINAL TCNVQTLEEK NKQLTDKIAS LELEQASSDY ENSTTRP00000003195/1-1097 EEKCNLEKEL AKSKVDINAL TCNLQTLEEK NKQLADQIAS LELEQATSDY bmy_04449T0/1-606 ---------- ---------- ---------- ---------- ---------- BACU014103/1-1082 EEKCNLEKEL AKSKVDINAL TRNLQTLEEK NKQLADQIAS LELEQATSDY 551 600 ENSBTAP00000012295/1-1106 HW----LAQQ QVENVLGKIT DSKNKLAYEK GKLQTKVKQL EEQLHSLTET ENSTTRP00000003195/1-1097 HW----LAQQ QVENVLGKIT ESKNKLAYEK GRLQIKVKQL EEQLHSFTET bmy_04449T0/1-606 ---------- ---------- ---------- ---RIKVKQL EEQLHSFTET BACU014103/1-1082 HWGYKKLAQQ QVENVLGKIT ESKNKLAYEK GRLQIKVKQL EEQLHSFTET 601 650 ENSBTAP00000012295/1-1106 SSQNDHLRKL NKALEGKYAQ ---------- ---------- ----AKTELG ENSTTRP00000003195/1-1097 SSQNDHLRKF SKALEGKYAQ ---------- ---------- ----ANAELI bmy_04449T0/1-606 SSQNDHLRKL NKALEGRYAQ EMGDSRISLK TLLNAIKTME GRLEGKIDIL BACU014103/1-1082 SSQNDHLRKL NKALEGRYAQ EMGDSRISLK TLLNAIKTME GRLEGKIDIL 651 700 ENSBTAP00000012295/1-1106 AS---MTHSS ALERALSKVK SLLEKNEEEL SQAVKGRDAA LKESQKLKGD ENSTTRP00000003195/1-1097 ANKIYLQH-- -----LKEVK SILEKNEGEL SRVVKVRAAA LKETQKLKGD bmy_04449T0/1-606 ASRPLINDEP PNVLYRDSVK SILEKNEEEL SRVVKGRAAA LKESQKLKGD BACU014103/1-1082 ASRPLINDEP PNVLYRDSI- -ILMASD--- ---------V LSSSDPM--- 701 750 ENSBTAP00000012295/1-1106 LETLEDRENK K--------- VGNFQRLMNK WFEFNKACKY NVLLVHIASV ENSTTRP00000003195/1-1097 LEALEDRGNK K--------- ARNFQRQLAE AKE--DNCKV TIMLENVLAS bmy_04449T0/1-606 LEALEGRENK KARHQSFLKS VGNFQRQLAE AKE--DNCKV TIMLENVLAS BACU014103/1-1082 ---------- ---------- VGNFQRQLAE AKE--DNCKV TIMLENVLAS 751 800 ENSBTAP00000012295/1-1106 LFHSTILGKK QKSQDDIYRK VVTFSVLSIF R--------- ---------- ENSTTRP00000003195/1-1097 --YSKMQGAL EKVQTELGQR DSEIAGLKKE R--------- ---------- bmy_04449T0/1-606 --HSKMQGAL EKVQIELGRR DSEIAGLKKE RLMNKWFEFN QTSKTYCNML BACU014103/1-1082 --HSKMQGAL EKVQIELGRR DSEIAGLKKE R--------- ---------- 801 850 ENSBTAP00000012295/1-1106 ---------- --ALNQQRVQ KLEAEVDQWQ ARMLVVDAQH NSEMEPLQKA ENSTTRP00000003195/1-1097 ---------- --ALNQQQVQ KLEAEADQWQ ARVLVVEAQH NSEMEPLQKA bmy_04449T0/1-606 VVHIASMLWE NKALNQQRVQ KLEAEVDQWQ ARILVVDAQH NSEMEPLQKA BACU014103/1-1082 ---------- --ALNQQRVQ KLEAEVDQWQ ARILVVDAQH SSEMEPLQKA 851 900 ENSBTAP00000012295/1-1106 LDVAREDNRK LAMSLEQALQ TNNHLQTKLD HVQEKLESKE LERQNLETFK ENSTTRP00000003195/1-1097 LDVAREDNRT LAMSLEQALQ TNHHLQTKLD HVQEKLESKE LERQTLETFK bmy_04449T0/1-606 LDVAREDNRK LAMSLEQALQ TNNHLQTKLD HVQEKLENKE LERQNLETCK BACU014103/1-1082 LDVAREDNRK LAMSLEQALQ TNNQLQTKLD HVQEKLENKE LERKNLETCR 901 950 ENSBTAP00000012295/1-1106 ERMSEESKIE AELHAERIDA LRKQFQIERE TAKKAAQREV TEMKKALDEA ENSTTRP00000003195/1-1097 EQMSEESKIE AELHAERIDA LRKQFQIERE TAKKAAQREV TELKKALDEA bmy_04449T0/1-606 ERMSEESKIE AELHAERIDA LRKQFQIERE TAKKAAQREV TELKKALDEA BACU014103/1-1082 ERMSEESKIE AELHAERIDA LRKQFQIERE TAKKAAQREV TELKKALDEA 951 1000 ENSBTAP00000012295/1-1106 NFRSVEVSRT NRELRQKLTE LEKLLNSSKE KIKNQRAQIK LHLSAKANNA ENSTTRP00000003195/1-1097 NFRSVEVSRT NRELRQKLTE LEKTLNSSKE KIKSQKAQIK LHLSAKTNNA bmy_04449T0/1-606 NFRSVEVSRS NRELRQKLTE LEKILNSSKE KIKNQKAQIK LHLSAKANNA BACU014103/1-1082 NFRSVEVSRS NRELRQKLTE LEKILNSSKE KIKNQKAQIK LHLSAKANNA 1001 1050 ENSBTAP00000012295/1-1106 QNVERMK-QI ETELRQMELI KDQYQKKNYE QSLSIQKFVS EMTNLQKEMQ ENSTTRP00000003195/1-1097 QNTERMK-QI ETELRQMEII KDQYQKKNYE QSLSIQKFVS EMTNLQKEMQ bmy_04449T0/1-606 QNTERMKVQI ETELRQMELI KDQYQKKNYE ---------- -----QKEMQ BACU014103/1-1082 QNIERMK-QI ETELRQMELI KDQYQKKNYE QSVSIQKLVS EMTNLQKEMK 1051 1100 ENSBTAP00000012295/1-1106 LLARSQYDTS ARNKQQELRL EAERKLRQEL ENRCQELEET IRHLKKCKEA ENSTTRP00000003195/1-1097 LLAKSQYDLS ARNKQQELRL EAEWKRRREL ERRCQELEET IRHLKKCKEA bmy_04449T0/1-606 LLAKSQYDMS ARNKQQELRL EAEWKRRQEL EHRCQELEET VRHLKKCKEA BACU014103/1-1082 LLAKSQYDMS ARNKQQELRL EAEWRRRQEL EHRCQELEET VRHLKKCKEA 1101 1150 ENSBTAP00000012295/1-1106 TENKLKEASV ESEQITANLE EAHRWFKCRF DGLQLELTKN RLQRLPREDR ENSTTRP00000003195/1-1097 TENKLKEASV ESEQITANLE EAQRWFNCRL DGLQLELTKN RLQ---REDR bmy_04449T0/1-606 TENKLKEASV ESEQVSANLE EAQRWFKCRL DGLQLELTKN RLK---REDR BACU014103/1-1082 TENKLKEASV ESEQVSANLE EAQRWFKCRL DGLQLELTKN RLQ---REDR 1151 1200 ENSBTAP00000012295/1-1106 WREEDQDKRH NSMSNQSALH RWENKRN-RL VPKKCHSEQE RK--- ENSTTRP00000003195/1-1097 WREKDQDKRH NGVSNQSALH RWENKQNLRL VPKKCHSELK RK--- bmy_04449T0/1-606 WREEDQDKRH NGISNQSALH RWENKQNLRL VPKKCHSELK RKWCP BACU014103/1-1082 WREEDQDKRH NGISNQSALH RWENKQNLRL VPKKCHSELE RKWCP